{"id":"https://openalex.org/W2946736574","doi":"https://doi.org/10.1093/bioinformatics/btz388","title":"Protein-ensemble\u2013RNA docking by efficient consideration of protein flexibility through homology models","display_name":"Protein-ensemble\u2013RNA docking by efficient consideration of protein flexibility through homology models","publication_year":2019,"publication_date":"2019-05-03","ids":{"openalex":"https://openalex.org/W2946736574","doi":"https://doi.org/10.1093/bioinformatics/btz388","mag":"2946736574","pmid":"https://pubmed.ncbi.nlm.nih.gov/31086984"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz388","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz388","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059824731","display_name":"Jiahua He","orcid":"https://orcid.org/0000-0002-9075-4978"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiahua He","raw_affiliation_strings":["Institute of Biophysics, School of Physics, Huazhong University of Science and Technology , Wuhan, Hubei, China"],"affiliations":[{"raw_affiliation_string":"Institute of Biophysics, School of Physics, Huazhong University of Science and Technology , Wuhan, Hubei, China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051853189","display_name":"Huanyu Tao","orcid":null},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huanyu Tao","raw_affiliation_strings":["Institute of Biophysics, School of Physics, Huazhong University of Science and Technology , Wuhan, Hubei, China"],"affiliations":[{"raw_affiliation_string":"Institute of Biophysics, School of Physics, Huazhong University of Science and Technology , Wuhan, Hubei, China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053305024","display_name":"Sheng\u2010You Huang","orcid":"https://orcid.org/0000-0002-4209-4565"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Sheng-You Huang","raw_affiliation_strings":["Institute of Biophysics, School of Physics, Huazhong University of Science and Technology , Wuhan, Hubei, China"],"affiliations":[{"raw_affiliation_string":"Institute of Biophysics, School of Physics, Huazhong University of Science and Technology , Wuhan, Hubei, China","institution_ids":["https://openalex.org/I47720641"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5053305024"],"corresponding_institution_ids":["https://openalex.org/I47720641"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.5342,"has_fulltext":false,"cited_by_count":27,"citation_normalized_percentile":{"value":0.82902437,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"35","issue":"23","first_page":"4994","last_page":"5002"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.6985371112823486},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6317806839942932},{"id":"https://openalex.org/keywords/homology-modeling","display_name":"Homology modeling","score":0.5920093655586243},{"id":"https://openalex.org/keywords/protein\u2013ligand-docking","display_name":"Protein\u2013ligand docking","score":0.5790929198265076},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5283445119857788},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.48844948410987854},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.442113995552063},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.2960815131664276},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21447092294692993},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.11478316783905029},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.08367341756820679},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07813921570777893},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.07137668132781982}],"concepts":[{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.6985371112823486},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6317806839942932},{"id":"https://openalex.org/C169627665","wikidata":"https://www.wikidata.org/wiki/Q5767913","display_name":"Homology modeling","level":3,"score":0.5920093655586243},{"id":"https://openalex.org/C77319485","wikidata":"https://www.wikidata.org/wiki/Q7251520","display_name":"Protein\u2013ligand docking","level":4,"score":0.5790929198265076},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5283445119857788},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.48844948410987854},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.442113995552063},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2960815131664276},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21447092294692993},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.11478316783905029},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.08367341756820679},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07813921570777893},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.07137668132781982},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz388","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz388","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31086984","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31086984","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7476102074","display_name":null,"funder_award_id":"2016YFC1305805","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G7582944686","display_name":null,"funder_award_id":"2016YFC1305800","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G7618829171","display_name":null,"funder_award_id":"31670724","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321883","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":78,"referenced_works":["https://openalex.org/W259468590","https://openalex.org/W1513606750","https://openalex.org/W1524192356","https://openalex.org/W1864265177","https://openalex.org/W1977287926","https://openalex.org/W1979284950","https://openalex.org/W1981991480","https://openalex.org/W1984574291","https://openalex.org/W1994183585","https://openalex.org/W1994909868","https://openalex.org/W2000036186","https://openalex.org/W2000383223","https://openalex.org/W2003635059","https://openalex.org/W2006704067","https://openalex.org/W2015175027","https://openalex.org/W2021343666","https://openalex.org/W2022284509","https://openalex.org/W2030303852","https://openalex.org/W2038545035","https://openalex.org/W2044955175","https://openalex.org/W2048739031","https://openalex.org/W2050002679","https://openalex.org/W2051210555","https://openalex.org/W2054394841","https://openalex.org/W2058615001","https://openalex.org/W2071739012","https://openalex.org/W2072180710","https://openalex.org/W2074104861","https://openalex.org/W2075200002","https://openalex.org/W2076563297","https://openalex.org/W2081724853","https://openalex.org/W2083717115","https://openalex.org/W2087424704","https://openalex.org/W2091734240","https://openalex.org/W2095629809","https://openalex.org/W2101086441","https://openalex.org/W2105527266","https://openalex.org/W2114520383","https://openalex.org/W2124432783","https://openalex.org/W2127290087","https://openalex.org/W2129279466","https://openalex.org/W2129414710","https://openalex.org/W2130479394","https://openalex.org/W2137167381","https://openalex.org/W2150399099","https://openalex.org/W2156558709","https://openalex.org/W2156650169","https://openalex.org/W2161671472","https://openalex.org/W2164059036","https://openalex.org/W2165165230","https://openalex.org/W2169133129","https://openalex.org/W2169562071","https://openalex.org/W2171074980","https://openalex.org/W2276563171","https://openalex.org/W2342972270","https://openalex.org/W2506542935","https://openalex.org/W2547315781","https://openalex.org/W2556500313","https://openalex.org/W2560643340","https://openalex.org/W2562674913","https://openalex.org/W2582543740","https://openalex.org/W2597602671","https://openalex.org/W2615136515","https://openalex.org/W2748927955","https://openalex.org/W2754016687","https://openalex.org/W2764845094","https://openalex.org/W2785329615","https://openalex.org/W2791771306","https://openalex.org/W2794774007","https://openalex.org/W2808844862","https://openalex.org/W2883093401","https://openalex.org/W2888311493","https://openalex.org/W2900416129","https://openalex.org/W2921610364","https://openalex.org/W2952396359","https://openalex.org/W3106930452","https://openalex.org/W6630721513","https://openalex.org/W6675777197"],"related_works":["https://openalex.org/W1581147483","https://openalex.org/W2329052364","https://openalex.org/W4310018788","https://openalex.org/W2417162538","https://openalex.org/W2162967120","https://openalex.org/W1567411871","https://openalex.org/W2301625241","https://openalex.org/W2072180710","https://openalex.org/W2794807012","https://openalex.org/W2423377342"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
