{"id":"https://openalex.org/W2944519899","doi":"https://doi.org/10.1093/bioinformatics/btz381","title":"A Bayesian two-way latent structure model for genomic data integration reveals few pan-genomic cluster subtypes in a breast cancer cohort","display_name":"A Bayesian two-way latent structure model for genomic data integration reveals few pan-genomic cluster subtypes in a breast cancer cohort","publication_year":2019,"publication_date":"2019-05-01","ids":{"openalex":"https://openalex.org/W2944519899","doi":"https://doi.org/10.1093/bioinformatics/btz381","mag":"2944519899","pmid":"https://pubmed.ncbi.nlm.nih.gov/31077301"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz381","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz381","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067080931","display_name":"David Swanson","orcid":"https://orcid.org/0000-0003-3174-1656"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"David M Swanson","raw_affiliation_strings":["Oslo Centre for Biostatistics and Epidemiology, Oslo University Hospital , Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Oslo Centre for Biostatistics and Epidemiology, Oslo University Hospital , Oslo, Norway","institution_ids":["https://openalex.org/I1281400175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082508483","display_name":"Tonje G. Lien","orcid":"https://orcid.org/0000-0003-3331-4201"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Tonje Lien","raw_affiliation_strings":["Department of Cancer Genetics, Institute for Cancer Research, Oslo University Hospital , Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Cancer Genetics, Institute for Cancer Research, Oslo University Hospital , Oslo, Norway","institution_ids":["https://openalex.org/I1281400175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024938513","display_name":"Helga Bergholtz","orcid":"https://orcid.org/0000-0003-0999-1106"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Helga Bergholtz","raw_affiliation_strings":["Department of Cancer Genetics, Institute for Cancer Research, Oslo University Hospital , Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Cancer Genetics, Institute for Cancer Research, Oslo University Hospital , Oslo, Norway","institution_ids":["https://openalex.org/I1281400175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052676245","display_name":"Th\u00e9rese S\u00f8rlie","orcid":"https://orcid.org/0000-0002-5995-2319"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Therese S\u00f8rlie","raw_affiliation_strings":["Department of Cancer Genetics, Institute for Cancer Research, Oslo University Hospital , Oslo, Norway","Institute of Clinical Medicine, University of Oslo , Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Cancer Genetics, Institute for Cancer Research, Oslo University Hospital , Oslo, Norway","institution_ids":["https://openalex.org/I1281400175"]},{"raw_affiliation_string":"Institute of Clinical Medicine, University of Oslo , Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025750693","display_name":"Arnoldo Frigessi","orcid":"https://orcid.org/0000-0001-7103-7589"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]},{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Arnoldo Frigessi","raw_affiliation_strings":["Oslo Centre for Biostatistics and Epidemiology, Oslo University Hospital , Oslo, Norway","Oslo Centre for Biostatistics and Epidemiology, University of Oslo , Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Oslo Centre for Biostatistics and Epidemiology, Oslo University Hospital , Oslo, Norway","institution_ids":["https://openalex.org/I1281400175"]},{"raw_affiliation_string":"Oslo Centre for Biostatistics and Epidemiology, University of Oslo , Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5067080931"],"corresponding_institution_ids":["https://openalex.org/I1281400175"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.6819,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.68315298,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"35","issue":"23","first_page":"4886","last_page":"4897"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6894512176513672},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6327788829803467},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5138838291168213},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.511980414390564},{"id":"https://openalex.org/keywords/gibbs-sampling","display_name":"Gibbs sampling","score":0.466587096452713},{"id":"https://openalex.org/keywords/cluster","display_name":"Cluster (spacecraft)","score":0.41335874795913696},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.41166579723358154},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32593488693237305}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6894512176513672},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6327788829803467},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5138838291168213},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.511980414390564},{"id":"https://openalex.org/C158424031","wikidata":"https://www.wikidata.org/wiki/Q1191905","display_name":"Gibbs sampling","level":3,"score":0.466587096452713},{"id":"https://openalex.org/C164866538","wikidata":"https://www.wikidata.org/wiki/Q367351","display_name":"Cluster (spacecraft)","level":2,"score":0.41335874795913696},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.41166579723358154},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32593488693237305},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015331","descriptor_name":"Cohort Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015331","descriptor_name":"Cohort Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015331","descriptor_name":"Cohort Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz381","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz381","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31077301","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31077301","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.5799999833106995,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320310758","display_name":"Kreftforeningen","ror":"https://ror.org/01925vb10"},{"id":"https://openalex.org/F4320323299","display_name":"Norges Forskningsr\u00e5d","ror":"https://ror.org/00epmv149"},{"id":"https://openalex.org/F4320335102","display_name":"Helse S\u00f8r-\u00d8st RHF","ror":"https://ror.org/02qx2s478"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":58,"referenced_works":["https://openalex.org/W1504062821","https://openalex.org/W1626929029","https://openalex.org/W1801655979","https://openalex.org/W1855267957","https://openalex.org/W1942714176","https://openalex.org/W1967220865","https://openalex.org/W1976951873","https://openalex.org/W1988142021","https://openalex.org/W2005895632","https://openalex.org/W2011728187","https://openalex.org/W2023461603","https://openalex.org/W2024060531","https://openalex.org/W2035669074","https://openalex.org/W2050112556","https://openalex.org/W2060643602","https://openalex.org/W2065760681","https://openalex.org/W2071906052","https://openalex.org/W2082503527","https://openalex.org/W2085245717","https://openalex.org/W2086890478","https://openalex.org/W2095763169","https://openalex.org/W2096283457","https://openalex.org/W2099139312","https://openalex.org/W2105717378","https://openalex.org/W2113570388","https://openalex.org/W2117673537","https://openalex.org/W2117968640","https://openalex.org/W2122467621","https://openalex.org/W2129288227","https://openalex.org/W2130854041","https://openalex.org/W2131994307","https://openalex.org/W2132619562","https://openalex.org/W2136127419","https://openalex.org/W2139967559","https://openalex.org/W2141599838","https://openalex.org/W2157840751","https://openalex.org/W2160076878","https://openalex.org/W2161732139","https://openalex.org/W2168442313","https://openalex.org/W2169144657","https://openalex.org/W2230805775","https://openalex.org/W2282837686","https://openalex.org/W2464912462","https://openalex.org/W2471224563","https://openalex.org/W2601262142","https://openalex.org/W2611654275","https://openalex.org/W2766632415","https://openalex.org/W2783685429","https://openalex.org/W2790533162","https://openalex.org/W2949127449","https://openalex.org/W2963962140","https://openalex.org/W3100461644","https://openalex.org/W3102983944","https://openalex.org/W3103194895","https://openalex.org/W4252676770","https://openalex.org/W6640487524","https://openalex.org/W6719119184","https://openalex.org/W6726537504"],"related_works":["https://openalex.org/W2888523397","https://openalex.org/W2380798983","https://openalex.org/W2361925972","https://openalex.org/W3097684051","https://openalex.org/W2561237030","https://openalex.org/W1963729455","https://openalex.org/W1607799170","https://openalex.org/W2781999953","https://openalex.org/W2945310313","https://openalex.org/W2183287460"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-23T05:10:03.516525","created_date":"2025-10-10T00:00:00"}
