{"id":"https://openalex.org/W2960230796","doi":"https://doi.org/10.1093/bioinformatics/btz362","title":"Selfish: discovery of differential chromatin interactions via a self-similarity measure","display_name":"Selfish: discovery of differential chromatin interactions via a self-similarity measure","publication_year":2019,"publication_date":"2019-05-10","ids":{"openalex":"https://openalex.org/W2960230796","doi":"https://doi.org/10.1093/bioinformatics/btz362","mag":"2960230796","pmid":"https://pubmed.ncbi.nlm.nih.gov/31510653"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz362","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz362","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/14/i145/28913224/btz362.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/14/i145/28913224/btz362.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072503750","display_name":"Abbas Roayaei Ardakany","orcid":null},"institutions":[{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Abbas Roayaei Ardakany","raw_affiliation_strings":["Department of Computer Science and Engineering, University of California, Riverside, Riverside, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of California, Riverside, Riverside, CA, USA","institution_ids":["https://openalex.org/I103635307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036380790","display_name":"Ferhat Ay","orcid":"https://orcid.org/0000-0002-0708-6914"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ferhat Ay","raw_affiliation_strings":["Division of Vaccine Discovery, La Jolla Institute for Allergy and Immunology, UC San Diego, La Jolla, CA, USA","School of Medicine, Department of Pediatrics, UC San Diego, La Jolla, CA, USA"],"affiliations":[{"raw_affiliation_string":"Division of Vaccine Discovery, La Jolla Institute for Allergy and Immunology, UC San Diego, La Jolla, CA, USA","institution_ids":["https://openalex.org/I1311191458","https://openalex.org/I36258959"]},{"raw_affiliation_string":"School of Medicine, Department of Pediatrics, UC San Diego, La Jolla, CA, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042005042","display_name":"Stefano Lonardi","orcid":"https://orcid.org/0000-0002-2696-7274"},"institutions":[{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Stefano Lonardi","raw_affiliation_strings":["Department of Computer Science and Engineering, University of California, Riverside, Riverside, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of California, Riverside, Riverside, CA, USA","institution_ids":["https://openalex.org/I103635307"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5042005042","https://openalex.org/A5072503750"],"corresponding_institution_ids":["https://openalex.org/I103635307"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.311,"has_fulltext":false,"cited_by_count":58,"citation_normalized_percentile":{"value":0.89161973,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"35","issue":"14","first_page":"i145","last_page":"i153"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/replicate","display_name":"Replicate","score":0.7931901216506958},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.6984865069389343},{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.6847963333129883},{"id":"https://openalex.org/keywords/measure","display_name":"Measure (data warehouse)","score":0.6495230197906494},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.576771080493927},{"id":"https://openalex.org/keywords/differential","display_name":"Differential (mechanical device)","score":0.5456193685531616},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.44907692074775696},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.43447068333625793},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4332827925682068},{"id":"https://openalex.org/keywords/similitude","display_name":"Similitude","score":0.42287421226501465},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24759992957115173},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23855453729629517},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17780792713165283},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15247920155525208},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.15002653002738953},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.09556752443313599},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.07476300001144409},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.07352146506309509}],"concepts":[{"id":"https://openalex.org/C2781162219","wikidata":"https://www.wikidata.org/wiki/Q26250693","display_name":"Replicate","level":2,"score":0.7931901216506958},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.6984865069389343},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.6847963333129883},{"id":"https://openalex.org/C2780009758","wikidata":"https://www.wikidata.org/wiki/Q6804172","display_name":"Measure (data warehouse)","level":2,"score":0.6495230197906494},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.576771080493927},{"id":"https://openalex.org/C93226319","wikidata":"https://www.wikidata.org/wiki/Q193137","display_name":"Differential (mechanical device)","level":2,"score":0.5456193685531616},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.44907692074775696},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.43447068333625793},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4332827925682068},{"id":"https://openalex.org/C143271835","wikidata":"https://www.wikidata.org/wiki/Q254515","display_name":"Similitude","level":2,"score":0.42287421226501465},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24759992957115173},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23855453729629517},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17780792713165283},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15247920155525208},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.15002653002738953},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.09556752443313599},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.07476300001144409},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.07352146506309509},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz362","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz362","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/14/i145/28913224/btz362.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31510653","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31510653","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:5588727","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6612869","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz362","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz362","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/14/i145/28913224/btz362.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production","score":0.49000000953674316}],"awards":[{"id":"https://openalex.org/G1913545201","display_name":null,"funder_award_id":"IOS-1543963","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3702664197","display_name":null,"funder_award_id":"IIS-1814359","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8274340646","display_name":null,"funder_award_id":"IIS-1526742","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2960230796.pdf","grobid_xml":"https://content.openalex.org/works/W2960230796.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1973062929","https://openalex.org/W1985729788","https://openalex.org/W2001576815","https://openalex.org/W2002401750","https://openalex.org/W2018667441","https://openalex.org/W2018730592","https://openalex.org/W2036663020","https://openalex.org/W2056482755","https://openalex.org/W2070021921","https://openalex.org/W2080477348","https://openalex.org/W2082912595","https://openalex.org/W2090037139","https://openalex.org/W2095521407","https://openalex.org/W2097798909","https://openalex.org/W2102368172","https://openalex.org/W2110065044","https://openalex.org/W2112058982","https://openalex.org/W2117737460","https://openalex.org/W2123227077","https://openalex.org/W2141407136","https://openalex.org/W2142270559","https://openalex.org/W2150455380","https://openalex.org/W2150729756","https://openalex.org/W2151103935","https://openalex.org/W2158698691","https://openalex.org/W2195190137","https://openalex.org/W2303393194","https://openalex.org/W2530932278","https://openalex.org/W2557097554","https://openalex.org/W2765567136","https://openalex.org/W2792451492","https://openalex.org/W2887206273","https://openalex.org/W2904120442","https://openalex.org/W2950020758","https://openalex.org/W2951559295","https://openalex.org/W2952940726","https://openalex.org/W2953369069","https://openalex.org/W2969310280","https://openalex.org/W6680991062"],"related_works":["https://openalex.org/W4254851101","https://openalex.org/W3171007296","https://openalex.org/W22115721","https://openalex.org/W2321234655","https://openalex.org/W2065444835","https://openalex.org/W4394550905","https://openalex.org/W2952773340","https://openalex.org/W2470062578","https://openalex.org/W2372745973","https://openalex.org/W2366015234"],"abstract_inverted_index":{"https://github.com/ucrbioinfo/Selfish.":[0]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":4}],"updated_date":"2026-03-18T14:38:29.013473","created_date":"2025-10-10T00:00:00"}
