{"id":"https://openalex.org/W2944021362","doi":"https://doi.org/10.1093/bioinformatics/btz358","title":"iRNAD: a computational tool for identifying D modification sites in RNA sequence","display_name":"iRNAD: a computational tool for identifying D modification sites in RNA sequence","publication_year":2019,"publication_date":"2019-04-27","ids":{"openalex":"https://openalex.org/W2944021362","doi":"https://doi.org/10.1093/bioinformatics/btz358","mag":"2944021362","pmid":"https://pubmed.ncbi.nlm.nih.gov/31077296"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz358","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz358","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018722475","display_name":"Zhaochun Xu","orcid":"https://orcid.org/0000-0003-1799-5529"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]},{"id":"https://openalex.org/I105991555","display_name":"Jingdezhen Ceramic Institute","ror":"https://ror.org/01d0jcz74","country_code":"CN","type":"education","lineage":["https://openalex.org/I105991555"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhao-Chun Xu","raw_affiliation_strings":["Computer Department, Jingdezhen Ceramic Institute , Jingdezhen, China","Key Laboratory for Neuro-Information of Ministry of Education , School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China"],"affiliations":[{"raw_affiliation_string":"Computer Department, Jingdezhen Ceramic Institute , Jingdezhen, China","institution_ids":["https://openalex.org/I105991555"]},{"raw_affiliation_string":"Key Laboratory for Neuro-Information of Ministry of Education , School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070079578","display_name":"Pengmian Feng","orcid":"https://orcid.org/0000-0001-7720-1503"},"institutions":[{"id":"https://openalex.org/I53411278","display_name":"Chengdu University of Traditional Chinese Medicine","ror":"https://ror.org/00pcrz470","country_code":"CN","type":"education","lineage":["https://openalex.org/I53411278"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peng-Mian Feng","raw_affiliation_strings":["Innovative Institute of Chinese Medicine and Pharmacy, Chengdu University of Traditional Chinese Medicine , Chengdu, China"],"affiliations":[{"raw_affiliation_string":"Innovative Institute of Chinese Medicine and Pharmacy, Chengdu University of Traditional Chinese Medicine , Chengdu, China","institution_ids":["https://openalex.org/I53411278"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101757183","display_name":"Hui Yang","orcid":"https://orcid.org/0000-0001-7122-1212"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hui Yang","raw_affiliation_strings":["Key Laboratory for Neuro-Information of Ministry of Education , School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory for Neuro-Information of Ministry of Education , School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032406968","display_name":"Wang\u2010Ren Qiu","orcid":"https://orcid.org/0000-0001-7659-8553"},"institutions":[{"id":"https://openalex.org/I105991555","display_name":"Jingdezhen Ceramic Institute","ror":"https://ror.org/01d0jcz74","country_code":"CN","type":"education","lineage":["https://openalex.org/I105991555"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wang-Ren Qiu","raw_affiliation_strings":["Computer Department, Jingdezhen Ceramic Institute , Jingdezhen, China"],"affiliations":[{"raw_affiliation_string":"Computer Department, Jingdezhen Ceramic Institute , Jingdezhen, China","institution_ids":["https://openalex.org/I105991555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100344463","display_name":"Wei Chen","orcid":"https://orcid.org/0000-0002-6857-7696"},"institutions":[{"id":"https://openalex.org/I53411278","display_name":"Chengdu University of Traditional Chinese Medicine","ror":"https://ror.org/00pcrz470","country_code":"CN","type":"education","lineage":["https://openalex.org/I53411278"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wei Chen","raw_affiliation_strings":["Innovative Institute of Chinese Medicine and Pharmacy, Chengdu University of Traditional Chinese Medicine , Chengdu, China"],"affiliations":[{"raw_affiliation_string":"Innovative Institute of Chinese Medicine and Pharmacy, Chengdu University of Traditional Chinese Medicine , Chengdu, China","institution_ids":["https://openalex.org/I53411278"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041539298","display_name":"Hao Lin","orcid":"https://orcid.org/0000-0001-6265-2862"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Hao Lin","raw_affiliation_strings":["Key Laboratory for Neuro-Information of Ministry of Education , School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory for Neuro-Information of Ministry of Education , School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China","institution_ids":["https://openalex.org/I150229711"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5041539298","https://openalex.org/A5100344463"],"corresponding_institution_ids":["https://openalex.org/I150229711","https://openalex.org/I53411278"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":6.0123,"has_fulltext":false,"cited_by_count":83,"citation_normalized_percentile":{"value":0.97251456,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":100},"biblio":{"volume":"35","issue":"23","first_page":"4922","last_page":"4929"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6643552780151367},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5732356309890747},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5257409811019897},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.4868166148662567},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2827730178833008},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.27715304493904114},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11076641082763672}],"concepts":[{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6643552780151367},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5732356309890747},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5257409811019897},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.4868166148662567},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2827730178833008},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.27715304493904114},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11076641082763672}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009711","descriptor_name":"Nucleotides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009711","descriptor_name":"Nucleotides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009711","descriptor_name":"Nucleotides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz358","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz358","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31077296","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31077296","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1739709948","display_name":null,"funder_award_id":"61772119","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1755459497","display_name":null,"funder_award_id":"ZYGX2016J125","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G2083062581","display_name":null,"funder_award_id":"31760315","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G253460150","display_name":null,"funder_award_id":"61841104","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2731577396","display_name":null,"funder_award_id":"ZYGX2015Z006","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G3040512177","display_name":null,"funder_award_id":"31771471","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G426324194","display_name":null,"funder_award_id":"GJJ180733","funder_id":"https://openalex.org/F4320325626","funder_display_name":"Education Department of Jiangxi Province"},{"id":"https://openalex.org/G6231769588","display_name":null,"funder_award_id":"ZYGX2016J118","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G7511606564","display_name":null,"funder_award_id":"GJJ180703","funder_id":"https://openalex.org/F4320325626","funder_display_name":"Education Department of Jiangxi Province"},{"id":"https://openalex.org/G7563554493","display_name":null,"funder_award_id":"31860312","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8226809328","display_name":null,"funder_award_id":"ZYGX2016J223","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320325626","display_name":"Education Department of Jiangxi Province","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":73,"referenced_works":["https://openalex.org/W1021867786","https://openalex.org/W1571751680","https://openalex.org/W1966454532","https://openalex.org/W1968536479","https://openalex.org/W1970889624","https://openalex.org/W1973513645","https://openalex.org/W1979975672","https://openalex.org/W2004132756","https://openalex.org/W2010873323","https://openalex.org/W2064367668","https://openalex.org/W2079796553","https://openalex.org/W2086296134","https://openalex.org/W2087158203","https://openalex.org/W2093567555","https://openalex.org/W2094729320","https://openalex.org/W2113120772","https://openalex.org/W2114024619","https://openalex.org/W2141818629","https://openalex.org/W2147363872","https://openalex.org/W2151031196","https://openalex.org/W2154175537","https://openalex.org/W2157548679","https://openalex.org/W2157825442","https://openalex.org/W2167673850","https://openalex.org/W2170747616","https://openalex.org/W2205505631","https://openalex.org/W2223836536","https://openalex.org/W2472502719","https://openalex.org/W2508362099","https://openalex.org/W2508405377","https://openalex.org/W2526763554","https://openalex.org/W2528774686","https://openalex.org/W2553132141","https://openalex.org/W2557283063","https://openalex.org/W2565608178","https://openalex.org/W2605614082","https://openalex.org/W2606314633","https://openalex.org/W2737592062","https://openalex.org/W2742391547","https://openalex.org/W2762279748","https://openalex.org/W2766389776","https://openalex.org/W2790788997","https://openalex.org/W2792246829","https://openalex.org/W2792363117","https://openalex.org/W2800333284","https://openalex.org/W2805110914","https://openalex.org/W2805791355","https://openalex.org/W2810225085","https://openalex.org/W2883534252","https://openalex.org/W2884557428","https://openalex.org/W2886373325","https://openalex.org/W2890951984","https://openalex.org/W2891893703","https://openalex.org/W2892079508","https://openalex.org/W2894836881","https://openalex.org/W2896636431","https://openalex.org/W2898355747","https://openalex.org/W2900694973","https://openalex.org/W2901754076","https://openalex.org/W2910591656","https://openalex.org/W2912497196","https://openalex.org/W2913961829","https://openalex.org/W2915489297","https://openalex.org/W2963614249","https://openalex.org/W4234879553","https://openalex.org/W4234887284","https://openalex.org/W6720570500","https://openalex.org/W6725105739","https://openalex.org/W6748702407","https://openalex.org/W6751150484","https://openalex.org/W6754842948","https://openalex.org/W6754904495","https://openalex.org/W6755276765"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"A":[0],"user-friendly":[1],"web-server":[2],"called":[3],"iRNAD":[4],"can":[5],"be":[6],"freely":[7],"accessible":[8],"at":[9],"http://lin-group.cn/server/iRNAD,":[10],"which":[11],"will":[12],"provide":[13],"convenience":[14],"and":[15],"guide":[16],"to":[17],"users":[18],"for":[19],"further":[20],"studying":[21],"D":[22],"modification.":[23]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":21},{"year":2020,"cited_by_count":25},{"year":2019,"cited_by_count":11}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
