{"id":"https://openalex.org/W2954411576","doi":"https://doi.org/10.1093/bioinformatics/btz346","title":"Alignment-free filtering for cfNA fusion fragments","display_name":"Alignment-free filtering for cfNA fusion fragments","publication_year":2019,"publication_date":"2019-05-11","ids":{"openalex":"https://openalex.org/W2954411576","doi":"https://doi.org/10.1093/bioinformatics/btz346","mag":"2954411576","pmid":"https://pubmed.ncbi.nlm.nih.gov/31510681"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz346","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz346","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/14/i225/28913662/btz346.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/14/i225/28913662/btz346.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007055094","display_name":"Xiao Yang","orcid":"https://orcid.org/0000-0002-1353-4170"},"institutions":[{"id":"https://openalex.org/I4210099336","display_name":"Menlo School","ror":"https://ror.org/01240pn49","country_code":"US","type":"education","lineage":["https://openalex.org/I4210099336"]},{"id":"https://openalex.org/I4210139067","display_name":"Grail (United States)","ror":"https://ror.org/03jwhs418","country_code":"US","type":"company","lineage":["https://openalex.org/I4210139067"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Xiao Yang","raw_affiliation_strings":["Grail, Inc, Menlo Park, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Grail, Inc, Menlo Park, CA, USA","institution_ids":["https://openalex.org/I4210139067","https://openalex.org/I4210099336"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103484910","display_name":"Yasushi Sait\u014d","orcid":null},"institutions":[{"id":"https://openalex.org/I4210099336","display_name":"Menlo School","ror":"https://ror.org/01240pn49","country_code":"US","type":"education","lineage":["https://openalex.org/I4210099336"]},{"id":"https://openalex.org/I4210139067","display_name":"Grail (United States)","ror":"https://ror.org/03jwhs418","country_code":"US","type":"company","lineage":["https://openalex.org/I4210139067"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yasushi Saito","raw_affiliation_strings":["Grail, Inc, Menlo Park, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Grail, Inc, Menlo Park, CA, USA","institution_ids":["https://openalex.org/I4210139067","https://openalex.org/I4210099336"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025368177","display_name":"Arjun A. Rao","orcid":"https://orcid.org/0000-0003-4480-3190"},"institutions":[{"id":"https://openalex.org/I4210099336","display_name":"Menlo School","ror":"https://ror.org/01240pn49","country_code":"US","type":"education","lineage":["https://openalex.org/I4210099336"]},{"id":"https://openalex.org/I4210139067","display_name":"Grail (United States)","ror":"https://ror.org/03jwhs418","country_code":"US","type":"company","lineage":["https://openalex.org/I4210139067"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Arjun Rao","raw_affiliation_strings":["Grail, Inc, Menlo Park, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Grail, Inc, Menlo Park, CA, USA","institution_ids":["https://openalex.org/I4210139067","https://openalex.org/I4210099336"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088994126","display_name":"Hyunsung John Kim","orcid":null},"institutions":[{"id":"https://openalex.org/I4210099336","display_name":"Menlo School","ror":"https://ror.org/01240pn49","country_code":"US","type":"education","lineage":["https://openalex.org/I4210099336"]},{"id":"https://openalex.org/I4210139067","display_name":"Grail (United States)","ror":"https://ror.org/03jwhs418","country_code":"US","type":"company","lineage":["https://openalex.org/I4210139067"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hyunsung John Kim","raw_affiliation_strings":["Grail, Inc, Menlo Park, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Grail, Inc, Menlo Park, CA, USA","institution_ids":["https://openalex.org/I4210139067","https://openalex.org/I4210099336"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112214175","display_name":"Pranav Singh","orcid":null},"institutions":[{"id":"https://openalex.org/I4210099336","display_name":"Menlo School","ror":"https://ror.org/01240pn49","country_code":"US","type":"education","lineage":["https://openalex.org/I4210099336"]},{"id":"https://openalex.org/I4210139067","display_name":"Grail (United States)","ror":"https://ror.org/03jwhs418","country_code":"US","type":"company","lineage":["https://openalex.org/I4210139067"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pranav Singh","raw_affiliation_strings":["Grail, Inc, Menlo Park, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Grail, Inc, Menlo Park, CA, USA","institution_ids":["https://openalex.org/I4210139067","https://openalex.org/I4210099336"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068490912","display_name":"Eric R. Scott","orcid":"https://orcid.org/0000-0002-7430-7879"},"institutions":[{"id":"https://openalex.org/I4210099336","display_name":"Menlo School","ror":"https://ror.org/01240pn49","country_code":"US","type":"education","lineage":["https://openalex.org/I4210099336"]},{"id":"https://openalex.org/I4210139067","display_name":"Grail (United States)","ror":"https://ror.org/03jwhs418","country_code":"US","type":"company","lineage":["https://openalex.org/I4210139067"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric Scott","raw_affiliation_strings":["Grail, Inc, Menlo Park, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Grail, Inc, Menlo Park, CA, USA","institution_ids":["https://openalex.org/I4210139067","https://openalex.org/I4210099336"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008849049","display_name":"Matthew H. Larson","orcid":"https://orcid.org/0000-0002-6778-2604"},"institutions":[{"id":"https://openalex.org/I4210099336","display_name":"Menlo School","ror":"https://ror.org/01240pn49","country_code":"US","type":"education","lineage":["https://openalex.org/I4210099336"]},{"id":"https://openalex.org/I4210139067","display_name":"Grail (United States)","ror":"https://ror.org/03jwhs418","country_code":"US","type":"company","lineage":["https://openalex.org/I4210139067"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew Larson","raw_affiliation_strings":["Grail, Inc, Menlo Park, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Grail, Inc, Menlo Park, CA, USA","institution_ids":["https://openalex.org/I4210139067","https://openalex.org/I4210099336"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102836427","display_name":"Wenying Pan","orcid":"https://orcid.org/0000-0002-3291-7038"},"institutions":[{"id":"https://openalex.org/I4210099336","display_name":"Menlo School","ror":"https://ror.org/01240pn49","country_code":"US","type":"education","lineage":["https://openalex.org/I4210099336"]},{"id":"https://openalex.org/I4210139067","display_name":"Grail (United States)","ror":"https://ror.org/03jwhs418","country_code":"US","type":"company","lineage":["https://openalex.org/I4210139067"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wenying Pan","raw_affiliation_strings":["Grail, Inc, Menlo Park, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Grail, Inc, Menlo Park, CA, USA","institution_ids":["https://openalex.org/I4210139067","https://openalex.org/I4210099336"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076270105","display_name":"Mohini Jangi","orcid":null},"institutions":[{"id":"https://openalex.org/I4210099336","display_name":"Menlo School","ror":"https://ror.org/01240pn49","country_code":"US","type":"education","lineage":["https://openalex.org/I4210099336"]},{"id":"https://openalex.org/I4210139067","display_name":"Grail (United States)","ror":"https://ror.org/03jwhs418","country_code":"US","type":"company","lineage":["https://openalex.org/I4210139067"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mohini Desai","raw_affiliation_strings":["Grail, Inc, Menlo Park, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Grail, Inc, Menlo Park, CA, USA","institution_ids":["https://openalex.org/I4210139067","https://openalex.org/I4210099336"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044313889","display_name":"Earl Hubbell","orcid":"https://orcid.org/0000-0001-7301-3759"},"institutions":[{"id":"https://openalex.org/I4210099336","display_name":"Menlo School","ror":"https://ror.org/01240pn49","country_code":"US","type":"education","lineage":["https://openalex.org/I4210099336"]},{"id":"https://openalex.org/I4210139067","display_name":"Grail (United States)","ror":"https://ror.org/03jwhs418","country_code":"US","type":"company","lineage":["https://openalex.org/I4210139067"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Earl Hubbell","raw_affiliation_strings":["Grail, Inc, Menlo Park, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Grail, Inc, Menlo Park, CA, USA","institution_ids":["https://openalex.org/I4210139067","https://openalex.org/I4210099336"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5007055094","https://openalex.org/A5103484910"],"corresponding_institution_ids":["https://openalex.org/I4210099336","https://openalex.org/I4210139067"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.3048,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.52322775,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"35","issue":"14","first_page":"i225","last_page":"i232"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.4927000105381012,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.4927000105381012,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.1468999981880188,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.06449999660253525,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.7666222453117371},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6966952085494995},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.6557432413101196},{"id":"https://openalex.org/keywords/spurious-relationship","display_name":"Spurious relationship","score":0.5656549334526062},{"id":"https://openalex.org/keywords/fusion","display_name":"Fusion","score":0.5542527437210083},{"id":"https://openalex.org/keywords/fragment","display_name":"Fragment (logic)","score":0.5468577146530151},{"id":"https://openalex.org/keywords/sensitivity","display_name":"Sensitivity (control systems)","score":0.5260522365570068},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.5091959834098816},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.45261886715888977},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4297053813934326},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4118378758430481},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.2989041209220886},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.2308782935142517},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20509088039398193},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.12631666660308838}],"concepts":[{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.7666222453117371},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6966952085494995},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.6557432413101196},{"id":"https://openalex.org/C97256817","wikidata":"https://www.wikidata.org/wiki/Q1462316","display_name":"Spurious relationship","level":2,"score":0.5656549334526062},{"id":"https://openalex.org/C158525013","wikidata":"https://www.wikidata.org/wiki/Q2593739","display_name":"Fusion","level":2,"score":0.5542527437210083},{"id":"https://openalex.org/C2776235265","wikidata":"https://www.wikidata.org/wiki/Q18392052","display_name":"Fragment (logic)","level":2,"score":0.5468577146530151},{"id":"https://openalex.org/C21200559","wikidata":"https://www.wikidata.org/wiki/Q7451068","display_name":"Sensitivity (control systems)","level":2,"score":0.5260522365570068},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.5091959834098816},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.45261886715888977},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4297053813934326},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4118378758430481},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.2989041209220886},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2308782935142517},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20509088039398193},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.12631666660308838},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C24326235","wikidata":"https://www.wikidata.org/wiki/Q126095","display_name":"Electronic engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000073888","descriptor_name":"Cell-Free Nucleic Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073888","descriptor_name":"Cell-Free Nucleic Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073888","descriptor_name":"Cell-Free Nucleic Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz346","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz346","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/14/i225/28913662/btz346.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31510681","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31510681","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:5588666","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6612805","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz346","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz346","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/14/i225/28913662/btz346.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.4300000071525574}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W2082462837","https://openalex.org/W2102610257","https://openalex.org/W2103569192","https://openalex.org/W2139399606","https://openalex.org/W2148802388","https://openalex.org/W2174938954","https://openalex.org/W2175981288","https://openalex.org/W2271526763","https://openalex.org/W2323326409","https://openalex.org/W2607938959","https://openalex.org/W2610513867","https://openalex.org/W2617211904","https://openalex.org/W2738107003","https://openalex.org/W2898789672"],"related_works":["https://openalex.org/W2162899405","https://openalex.org/W3113091479","https://openalex.org/W941090075","https://openalex.org/W2044987316","https://openalex.org/W2237480245","https://openalex.org/W3134374554","https://openalex.org/W4311248832","https://openalex.org/W2519167559","https://openalex.org/W2075065631","https://openalex.org/W4288358396"],"abstract_inverted_index":{"MOTIVATION:":[0],"Cell-free":[1],"nucleic":[2],"acid":[3],"(cfNA)":[4],"sequencing":[5],"data":[6,91,137],"require":[7],"improvements":[8],"to":[9,39,50,110],"existing":[10,64],"fusion":[11,53,83,124],"detection":[12,125],"methods":[13],"along":[14],"multiple":[15],"axes:":[16],"high":[17,56],"depth":[18],"of":[19,60],"sequencing,":[20],"low":[21],"allele":[22],"fractions,":[23],"short":[24],"fragment":[25],"lengths":[26],"and":[27,58,121,134,142,158],"specialized":[28],"barcodes,":[29],"such":[30],"as":[31,138,140],"unique":[32],"molecular":[33],"identifiers.":[34],"RESULTS:":[35],"AF4":[36,117,149],"was":[37],"developed":[38],"address":[40],"these":[41],"challenges.":[42],"It":[43],"uses":[44],"a":[45,72],"novel":[46],"alignment-free":[47],"kmer-based":[48],"method":[49],"detect":[51],"candidate":[52],"fragments":[54,67],"with":[55],"sensitivity":[57],"orders":[59],"magnitude":[61],"faster":[62],"than":[63],"tools.":[65],"Candidate":[66],"are":[68],"then":[69],"filtered":[70],"using":[71],"max-cover":[73],"criterion":[74],"that":[75,93,106],"significantly":[76],"reduces":[77,89],"spurious":[78],"matches":[79],"while":[80],"retaining":[81],"authentic":[82],"fragments.":[84],"This":[85],"efficient":[86],"first":[87],"stage":[88],"the":[90,99,111],"sufficiently":[92],"commonly":[94],"used":[95],"criteria":[96],"can":[97,114],"process":[98],"remaining":[100],"information,":[101],"or":[102],"sophisticated":[103],"filtering":[104],"policies":[105],"may":[107],"not":[108],"scale":[109],"raw":[112],"reads":[113],"be":[115],"used.":[116],"provides":[118],"both":[119,129],"targeted":[120],"de":[122],"novo":[123],"modes.":[126],"We":[127],"demonstrate":[128],"modes":[130],"in":[131],"benchmark":[132],"simulated":[133],"real":[135],"RNA-seq":[136],"well":[139],"clinical":[141],"cell-line":[143],"cfNA":[144],"data.":[145],"AVAILABILITY":[146],"AND":[147],"IMPLEMENTATION:":[148],"is":[150,159],"open":[151],"sourced,":[152],"licensed":[153],"under":[154],"Apache":[155],"License":[156],"2.0,":[157],"available":[160],"at:":[161],"https://github.com/grailbio/bio/tree/master/fusion.":[162]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2}],"updated_date":"2026-06-18T08:10:14.011955","created_date":"2025-10-10T00:00:00"}
