{"id":"https://openalex.org/W2953949806","doi":"https://doi.org/10.1093/bioinformatics/btz343","title":"Large-scale mammalian genome rearrangements coincide with chromatin interactions","display_name":"Large-scale mammalian genome rearrangements coincide with chromatin interactions","publication_year":2019,"publication_date":"2019-05-09","ids":{"openalex":"https://openalex.org/W2953949806","doi":"https://doi.org/10.1093/bioinformatics/btz343","mag":"2953949806","pmid":"https://pubmed.ncbi.nlm.nih.gov/31510664"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz343","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz343","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/14/i117/28913434/btz343.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/14/i117/28913434/btz343.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014999428","display_name":"Krister M. Swenson","orcid":"https://orcid.org/0000-0001-8690-1261"},"institutions":[{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210088322","display_name":"Centre de Gestion Scientifique","ror":"https://ror.org/003y0kg83","country_code":"FR","type":"facility","lineage":["https://openalex.org/I12356871","https://openalex.org/I1294671590","https://openalex.org/I142476485","https://openalex.org/I190752583","https://openalex.org/I190752583","https://openalex.org/I205703379","https://openalex.org/I2746051580","https://openalex.org/I2746051580","https://openalex.org/I4210088322","https://openalex.org/I4210091621","https://openalex.org/I4210145102","https://openalex.org/I4210145102","https://openalex.org/I4405258429","https://openalex.org/I70768539","https://openalex.org/I70768539"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Krister M Swenson","raw_affiliation_strings":["Centre Nationale de la Recherche Scientifique (CNRS), France","Laboratoire d\u2019Informatique, de Robotique, et de Microelectronique de Montpellier (LIRMM), Universit\u00e9 Montpellier, Montpellier, France"],"affiliations":[{"raw_affiliation_string":"Centre Nationale de la Recherche Scientifique (CNRS), France","institution_ids":["https://openalex.org/I4210088322","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Laboratoire d\u2019Informatique, de Robotique, et de Microelectronique de Montpellier (LIRMM), Universit\u00e9 Montpellier, Montpellier, France","institution_ids":["https://openalex.org/I4210101743","https://openalex.org/I19894307"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065720651","display_name":"Mathieu Blanchette","orcid":"https://orcid.org/0000-0002-9555-860X"},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Mathieu Blanchette","raw_affiliation_strings":["School of Computer Science, McGill University, Montr\u00e9al, QC, Canada"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, McGill University, Montr\u00e9al, QC, Canada","institution_ids":["https://openalex.org/I5023651"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5014999428"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210088322","https://openalex.org/I4210101743"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.3425,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.59207736,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"35","issue":"14","first_page":"i117","last_page":"i126"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/breakpoint","display_name":"Breakpoint","score":0.8222342729568481},{"id":"https://openalex.org/keywords/chromosomal-rearrangement","display_name":"Chromosomal rearrangement","score":0.6836874485015869},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6830781102180481},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6568171381950378},{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.5792460441589355},{"id":"https://openalex.org/keywords/chromosome","display_name":"Chromosome","score":0.5785927772521973},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5358302593231201},{"id":"https://openalex.org/keywords/gene-rearrangement","display_name":"Gene rearrangement","score":0.49584993720054626},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4319295287132263},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.41205736994743347},{"id":"https://openalex.org/keywords/gene-duplication","display_name":"Gene duplication","score":0.4108959436416626},{"id":"https://openalex.org/keywords/karyotype","display_name":"Karyotype","score":0.22357052564620972}],"concepts":[{"id":"https://openalex.org/C206936463","wikidata":"https://www.wikidata.org/wiki/Q634179","display_name":"Breakpoint","level":4,"score":0.8222342729568481},{"id":"https://openalex.org/C86546924","wikidata":"https://www.wikidata.org/wiki/Q3454460","display_name":"Chromosomal rearrangement","level":5,"score":0.6836874485015869},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6830781102180481},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6568171381950378},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.5792460441589355},{"id":"https://openalex.org/C30481170","wikidata":"https://www.wikidata.org/wiki/Q37748","display_name":"Chromosome","level":3,"score":0.5785927772521973},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5358302593231201},{"id":"https://openalex.org/C2992511266","wikidata":"https://www.wikidata.org/wiki/Q1093098","display_name":"Gene rearrangement","level":3,"score":0.49584993720054626},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4319295287132263},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.41205736994743347},{"id":"https://openalex.org/C7602840","wikidata":"https://www.wikidata.org/wiki/Q746284","display_name":"Gene duplication","level":3,"score":0.4108959436416626},{"id":"https://openalex.org/C53226629","wikidata":"https://www.wikidata.org/wiki/Q189967","display_name":"Karyotype","level":4,"score":0.22357052564620972}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002453","descriptor_name":"Cell Cycle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002453","descriptor_name":"Cell Cycle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002453","descriptor_name":"Cell Cycle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056905","descriptor_name":"Chromosome Breakpoints","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056905","descriptor_name":"Chromosome Breakpoints","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056905","descriptor_name":"Chromosome Breakpoints","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btz343","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz343","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/14/i117/28913434/btz343.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31510664","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31510664","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:lirmm-02410438v1","is_oa":false,"landing_page_url":"https://hal-lirmm.ccsd.cnrs.fr/lirmm-02410438","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2019, 35 (14), pp.i117-i126. &#x27E8;10.1093/bioinformatics/btz343&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:europepmc.org:5588707","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6612848","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz343","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz343","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/14/i117/28913434/btz343.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2953949806.pdf","grobid_xml":"https://content.openalex.org/works/W2953949806.grobid-xml"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W1482498530","https://openalex.org/W1491688952","https://openalex.org/W1689369637","https://openalex.org/W1815723737","https://openalex.org/W1958274537","https://openalex.org/W1963634449","https://openalex.org/W1966794959","https://openalex.org/W1968206926","https://openalex.org/W1977280548","https://openalex.org/W1979076392","https://openalex.org/W1986076276","https://openalex.org/W1986263614","https://openalex.org/W1990463642","https://openalex.org/W2000634668","https://openalex.org/W2000830981","https://openalex.org/W2010830156","https://openalex.org/W2026960083","https://openalex.org/W2051584943","https://openalex.org/W2054008728","https://openalex.org/W2054345649","https://openalex.org/W2056482755","https://openalex.org/W2061015334","https://openalex.org/W2069291679","https://openalex.org/W2070021921","https://openalex.org/W2073504534","https://openalex.org/W2090037139","https://openalex.org/W2097444625","https://openalex.org/W2106982327","https://openalex.org/W2108615748","https://openalex.org/W2110417468","https://openalex.org/W2114679453","https://openalex.org/W2120337267","https://openalex.org/W2123602665","https://openalex.org/W2124862004","https://openalex.org/W2130849966","https://openalex.org/W2136668186","https://openalex.org/W2137780942","https://openalex.org/W2139781203","https://openalex.org/W2140289804","https://openalex.org/W2149628296","https://openalex.org/W2155813507","https://openalex.org/W2157238875","https://openalex.org/W2157761435","https://openalex.org/W2159715390","https://openalex.org/W2161316685","https://openalex.org/W2162362951","https://openalex.org/W2164278804","https://openalex.org/W2345982775","https://openalex.org/W2405206615","https://openalex.org/W2800968671","https://openalex.org/W2804961397","https://openalex.org/W2804986495","https://openalex.org/W2807521829","https://openalex.org/W2808777423","https://openalex.org/W2949062400","https://openalex.org/W2949893004","https://openalex.org/W2952039867","https://openalex.org/W3098746395","https://openalex.org/W4213120450"],"related_works":["https://openalex.org/W1554401503","https://openalex.org/W2093773491","https://openalex.org/W2161263170","https://openalex.org/W1992882444","https://openalex.org/W4388924067","https://openalex.org/W1992301274","https://openalex.org/W2001759765","https://openalex.org/W2048911560","https://openalex.org/W2045132308","https://openalex.org/W2974948762"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
