{"id":"https://openalex.org/W2944186295","doi":"https://doi.org/10.1093/bioinformatics/btz306","title":"mirTime: identifying condition-specific targets of microRNA in time-series transcript data using Gaussian process model and spherical vector clustering","display_name":"mirTime: identifying condition-specific targets of microRNA in time-series transcript data using Gaussian process model and spherical vector clustering","publication_year":2019,"publication_date":"2019-04-25","ids":{"openalex":"https://openalex.org/W2944186295","doi":"https://doi.org/10.1093/bioinformatics/btz306","mag":"2944186295","pmid":"https://pubmed.ncbi.nlm.nih.gov/31070735"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz306","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz306","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102913121","display_name":"Hyejin Kang","orcid":"https://orcid.org/0000-0002-3811-3487"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hyejin Kang","raw_affiliation_strings":["Department of Computer Science and Engineering, Seoul National University , Seoul, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Seoul National University , Seoul, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090632282","display_name":"Hongryul Ahn","orcid":"https://orcid.org/0000-0002-5941-9784"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hongryul Ahn","raw_affiliation_strings":["Department of Computer Science and Engineering, Seoul National University , Seoul, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Seoul National University , Seoul, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019004424","display_name":"Kyuri Jo","orcid":"https://orcid.org/0000-0001-9222-6346"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Kyuri Jo","raw_affiliation_strings":["Department of Computer Science and Engineering, Seoul National University , Seoul, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Seoul National University , Seoul, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024513910","display_name":"Minsik Oh","orcid":"https://orcid.org/0009-0005-1817-2040"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Minsik Oh","raw_affiliation_strings":["Department of Computer Science and Engineering, Seoul National University , Seoul, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Seoul National University , Seoul, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100460439","display_name":"\ufeffSun Kim","orcid":"https://orcid.org/0000-0001-5385-9546"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Sun Kim","raw_affiliation_strings":["Bioinformatics Institute, Seoul National University , Seoul, Republic of Korea","Department of Computer Science and Engineering, Seoul National University , Seoul, Republic of Korea","Interdisciplinary Program in Bioinformatics, Seoul National University , Seoul, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Institute, Seoul National University , Seoul, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Seoul National University , Seoul, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Interdisciplinary Program in Bioinformatics, Seoul National University , Seoul, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100460439"],"corresponding_institution_ids":["https://openalex.org/I139264467"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.8417,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.66979917,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"37","issue":"11","first_page":"1544","last_page":"1553"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7357152700424194},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.6694608926773071},{"id":"https://openalex.org/keywords/series","display_name":"Series (stratigraphy)","score":0.6260554194450378},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5845319628715515},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.565348207950592},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5090117454528809},{"id":"https://openalex.org/keywords/gaussian-process","display_name":"Gaussian process","score":0.5021846294403076},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49194571375846863},{"id":"https://openalex.org/keywords/time-series","display_name":"Time series","score":0.48487767577171326},{"id":"https://openalex.org/keywords/vector","display_name":"Vector (molecular biology)","score":0.4841511845588684},{"id":"https://openalex.org/keywords/gaussian","display_name":"Gaussian","score":0.4033345878124237},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3914068639278412},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.38903096318244934},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2895498275756836},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.23391258716583252},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1763772964477539},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10587558150291443}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7357152700424194},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.6694608926773071},{"id":"https://openalex.org/C143724316","wikidata":"https://www.wikidata.org/wiki/Q312468","display_name":"Series (stratigraphy)","level":2,"score":0.6260554194450378},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5845319628715515},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.565348207950592},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5090117454528809},{"id":"https://openalex.org/C61326573","wikidata":"https://www.wikidata.org/wiki/Q1496376","display_name":"Gaussian process","level":3,"score":0.5021846294403076},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49194571375846863},{"id":"https://openalex.org/C151406439","wikidata":"https://www.wikidata.org/wiki/Q186588","display_name":"Time series","level":2,"score":0.48487767577171326},{"id":"https://openalex.org/C92087593","wikidata":"https://www.wikidata.org/wiki/Q427389","display_name":"Vector (molecular biology)","level":4,"score":0.4841511845588684},{"id":"https://openalex.org/C163716315","wikidata":"https://www.wikidata.org/wiki/Q901177","display_name":"Gaussian","level":2,"score":0.4033345878124237},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3914068639278412},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.38903096318244934},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2895498275756836},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.23391258716583252},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1763772964477539},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10587558150291443},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C40767141","wikidata":"https://www.wikidata.org/wiki/Q285697","display_name":"Recombinant DNA","level":3,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz306","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz306","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31070735","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31070735","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Affordable and clean energy","score":0.6600000262260437,"id":"https://metadata.un.org/sdg/7"}],"awards":[{"id":"https://openalex.org/G6401775497","display_name":null,"funder_award_id":"NRF-2014M3C9A3063541","funder_id":"https://openalex.org/F4320328359","funder_display_name":"Ministry of Science and ICT, South Korea"},{"id":"https://openalex.org/G8433063994","display_name":null,"funder_award_id":"NRF-2017M3C4A7065887","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"}],"funders":[{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320322107","display_name":"Korea Health Industry Development Institute","ror":"https://ror.org/00fdzyk40"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"},{"id":"https://openalex.org/F4320328359","display_name":"Ministry of Science and ICT, South Korea","ror":"https://ror.org/01wpjm123"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":52,"referenced_works":["https://openalex.org/W164706946","https://openalex.org/W560563232","https://openalex.org/W1794091547","https://openalex.org/W1900209405","https://openalex.org/W1975839045","https://openalex.org/W1987664183","https://openalex.org/W1994017643","https://openalex.org/W2022574738","https://openalex.org/W2028425846","https://openalex.org/W2042537761","https://openalex.org/W2050869737","https://openalex.org/W2077475358","https://openalex.org/W2087464689","https://openalex.org/W2092939357","https://openalex.org/W2095619968","https://openalex.org/W2103017472","https://openalex.org/W2103573355","https://openalex.org/W2113390076","https://openalex.org/W2123250471","https://openalex.org/W2131681506","https://openalex.org/W2134629862","https://openalex.org/W2137522370","https://openalex.org/W2137951585","https://openalex.org/W2146512944","https://openalex.org/W2148708580","https://openalex.org/W2149109760","https://openalex.org/W2149785901","https://openalex.org/W2151808499","https://openalex.org/W2159675211","https://openalex.org/W2159793493","https://openalex.org/W2165700458","https://openalex.org/W2169387693","https://openalex.org/W2179438025","https://openalex.org/W2221231509","https://openalex.org/W2230625883","https://openalex.org/W2293719222","https://openalex.org/W2302110566","https://openalex.org/W2337379458","https://openalex.org/W2400422949","https://openalex.org/W2512483198","https://openalex.org/W2560272594","https://openalex.org/W2563873157","https://openalex.org/W2625989536","https://openalex.org/W2736655086","https://openalex.org/W2767546566","https://openalex.org/W2768632638","https://openalex.org/W2780155440","https://openalex.org/W2801148143","https://openalex.org/W2804442212","https://openalex.org/W2890554107","https://openalex.org/W3099768174","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2737319532","https://openalex.org/W3151405604","https://openalex.org/W2565797512","https://openalex.org/W2050308539","https://openalex.org/W2793648706","https://openalex.org/W2019096591","https://openalex.org/W3032012916","https://openalex.org/W3043187607","https://openalex.org/W2169866437","https://openalex.org/W1964286703"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
