{"id":"https://openalex.org/W2943967679","doi":"https://doi.org/10.1093/bioinformatics/btz290","title":"ProSampler: an ultrafast and accurate motif finder in large ChIP-seq datasets for combinatory motif discovery","display_name":"ProSampler: an ultrafast and accurate motif finder in large ChIP-seq datasets for combinatory motif discovery","publication_year":2019,"publication_date":"2019-04-18","ids":{"openalex":"https://openalex.org/W2943967679","doi":"https://doi.org/10.1093/bioinformatics/btz290","mag":"2943967679","pmid":"https://pubmed.ncbi.nlm.nih.gov/31070745"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz290","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz290","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/22/4632/30706936/btz290.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/22/4632/30706936/btz290.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100421627","display_name":"Yang Li","orcid":"https://orcid.org/0000-0002-7677-9028"},"institutions":[{"id":"https://openalex.org/I102149020","display_name":"University of North Carolina at Charlotte","ror":"https://ror.org/04dawnj30","country_code":"US","type":"education","lineage":["https://openalex.org/I102149020"]},{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Yang Li","raw_affiliation_strings":["Department of Bioinformatics and Genomics, College of Computing and Informatics, The University of North Carolina at Charlotte , Charlotte, NC 28223, USA","School of Mathematics, Shandong University , Jinan 250100, China"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Genomics, College of Computing and Informatics, The University of North Carolina at Charlotte , Charlotte, NC 28223, USA","institution_ids":["https://openalex.org/I102149020"]},{"raw_affiliation_string":"School of Mathematics, Shandong University , Jinan 250100, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027704938","display_name":"Pengyu Ni","orcid":"https://orcid.org/0000-0001-9878-5480"},"institutions":[{"id":"https://openalex.org/I102149020","display_name":"University of North Carolina at Charlotte","ror":"https://ror.org/04dawnj30","country_code":"US","type":"education","lineage":["https://openalex.org/I102149020"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pengyu Ni","raw_affiliation_strings":["Department of Bioinformatics and Genomics, College of Computing and Informatics, The University of North Carolina at Charlotte , Charlotte, NC 28223, USA"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Genomics, College of Computing and Informatics, The University of North Carolina at Charlotte , Charlotte, NC 28223, USA","institution_ids":["https://openalex.org/I102149020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047244641","display_name":"Shaoqiang Zhang","orcid":"https://orcid.org/0000-0002-4127-0539"},"institutions":[{"id":"https://openalex.org/I15062923","display_name":"Tianjin Normal University","ror":"https://ror.org/05x2td559","country_code":"CN","type":"education","lineage":["https://openalex.org/I15062923"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shaoqiang Zhang","raw_affiliation_strings":["College of Computer and Information Engineering, Tianjin Normal University , Tianjin 300387, China"],"affiliations":[{"raw_affiliation_string":"College of Computer and Information Engineering, Tianjin Normal University , Tianjin 300387, China","institution_ids":["https://openalex.org/I15062923"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100696687","display_name":"Guojun Li","orcid":"https://orcid.org/0000-0003-1581-5897"},"institutions":[{"id":"https://openalex.org/I102149020","display_name":"University of North Carolina at Charlotte","ror":"https://ror.org/04dawnj30","country_code":"US","type":"education","lineage":["https://openalex.org/I102149020"]},{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Guojun Li","raw_affiliation_strings":["Department of Bioinformatics and Genomics, College of Computing and Informatics, The University of North Carolina at Charlotte , Charlotte, NC 28223, USA","School of Mathematics, Shandong University , Jinan 250100, China"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Genomics, College of Computing and Informatics, The University of North Carolina at Charlotte , Charlotte, NC 28223, USA","institution_ids":["https://openalex.org/I102149020"]},{"raw_affiliation_string":"School of Mathematics, Shandong University , Jinan 250100, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062568388","display_name":"Zhengchang Su","orcid":"https://orcid.org/0000-0003-4636-3440"},"institutions":[{"id":"https://openalex.org/I102149020","display_name":"University of North Carolina at Charlotte","ror":"https://ror.org/04dawnj30","country_code":"US","type":"education","lineage":["https://openalex.org/I102149020"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Zhengchang Su","raw_affiliation_strings":["Department of Bioinformatics and Genomics, College of Computing and Informatics, The University of North Carolina at Charlotte , Charlotte, NC 28223, USA"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Genomics, College of Computing and Informatics, The University of North Carolina at Charlotte , Charlotte, NC 28223, USA","institution_ids":["https://openalex.org/I102149020"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5062568388"],"corresponding_institution_ids":["https://openalex.org/I102149020"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.46,"has_fulltext":false,"cited_by_count":32,"citation_normalized_percentile":{"value":0.82049812,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"35","issue":"22","first_page":"4632","last_page":"4639"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7360137104988098},{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.720574140548706},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5582281947135925},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5182583332061768},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45597776770591736},{"id":"https://openalex.org/keywords/sequence-motif","display_name":"Sequence motif","score":0.45459914207458496},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4420159161090851},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40488380193710327},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22256067395210266},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15549063682556152},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12003892660140991},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11189296841621399}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7360137104988098},{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.720574140548706},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5582281947135925},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5182583332061768},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45597776770591736},{"id":"https://openalex.org/C117745874","wikidata":"https://www.wikidata.org/wiki/Q901612","display_name":"Sequence motif","level":3,"score":0.45459914207458496},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4420159161090851},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40488380193710327},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22256067395210266},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15549063682556152},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12003892660140991},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11189296841621399},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000081204","descriptor_name":"Chromatin Immunoprecipitation Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000081204","descriptor_name":"Chromatin Immunoprecipitation Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000081204","descriptor_name":"Chromatin Immunoprecipitation Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz290","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz290","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/22/4632/30706936/btz290.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31070745","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31070745","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6853706","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6853706","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz290","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz290","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/22/4632/30706936/btz290.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.7300000190734863,"id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G2993190395","display_name":null,"funder_award_id":"61572358","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3040862546","display_name":null,"funder_award_id":"61432010","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6475790766","display_name":null,"funder_award_id":"DBI-1661332","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G674948539","display_name":null,"funder_award_id":"R01GM106013","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7877521841","display_name":null,"funder_award_id":"31571354","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8467640970","display_name":null,"funder_award_id":"61771009","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320323993","display_name":"Natural Science Foundation of Tianjin City","ror":null},{"id":"https://openalex.org/F4320326190","display_name":"Tianjin Science and Technology Committee","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2943967679.pdf","grobid_xml":"https://content.openalex.org/works/W2943967679.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1900337607","https://openalex.org/W1979353384","https://openalex.org/W1998300401","https://openalex.org/W1999301653","https://openalex.org/W2014677321","https://openalex.org/W2027662098","https://openalex.org/W2073850887","https://openalex.org/W2074307047","https://openalex.org/W2097175728","https://openalex.org/W2098754388","https://openalex.org/W2102663142","https://openalex.org/W2103777723","https://openalex.org/W2105249891","https://openalex.org/W2112484474","https://openalex.org/W2112814753","https://openalex.org/W2115577355","https://openalex.org/W2118393799","https://openalex.org/W2121391914","https://openalex.org/W2121967239","https://openalex.org/W2124080033","https://openalex.org/W2125598804","https://openalex.org/W2131263703","https://openalex.org/W2143266521","https://openalex.org/W2157758083","https://openalex.org/W2162530919","https://openalex.org/W2167359290","https://openalex.org/W2168642461","https://openalex.org/W2171111703","https://openalex.org/W2171286893","https://openalex.org/W2171808845","https://openalex.org/W2293652778","https://openalex.org/W2481378334","https://openalex.org/W2541585197","https://openalex.org/W2601893679","https://openalex.org/W2621850397","https://openalex.org/W4240157490","https://openalex.org/W6669145357"],"related_works":["https://openalex.org/W3170299350","https://openalex.org/W2368410102","https://openalex.org/W2368037387","https://openalex.org/W2073661767","https://openalex.org/W2380185347","https://openalex.org/W2370034659","https://openalex.org/W2159636084","https://openalex.org/W2117168988","https://openalex.org/W2103777723","https://openalex.org/W2610941444"],"abstract_inverted_index":{"Supplementary":[0],"materials":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
