{"id":"https://openalex.org/W2938712064","doi":"https://doi.org/10.1093/bioinformatics/btz266","title":"Discovering novel mutation signatures by latent Dirichlet allocation with variational Bayes inference","display_name":"Discovering novel mutation signatures by latent Dirichlet allocation with variational Bayes inference","publication_year":2019,"publication_date":"2019-04-11","ids":{"openalex":"https://openalex.org/W2938712064","doi":"https://doi.org/10.1093/bioinformatics/btz266","mag":"2938712064","pmid":"https://pubmed.ncbi.nlm.nih.gov/30993319"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz266","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz266","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/22/4543/30706955/btz266.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/22/4543/30706955/btz266.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018901755","display_name":"Taro Matsutani","orcid":"https://orcid.org/0000-0001-6170-9927"},"institutions":[{"id":"https://openalex.org/I150744194","display_name":"Waseda University","ror":"https://ror.org/00ntfnx83","country_code":"JP","type":"education","lineage":["https://openalex.org/I150744194"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Taro Matsutani","raw_affiliation_strings":["AIST-Waseda University Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL) , Tokyo, Japan","Department of Electrical Engineering and Bioscience, Faculty of Science and Engineering, Waseda University , Tokyo, Japan","AIST-Waseda University Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL), Tokyo, Japan,","Department of Electrical Engineering and Bioscience, Faculty of Science and Engineering, Waseda University, Tokyo, Japan,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AIST-Waseda University Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL) , Tokyo, Japan","institution_ids":["https://openalex.org/I150744194"]},{"raw_affiliation_string":"Department of Electrical Engineering and Bioscience, Faculty of Science and Engineering, Waseda University , Tokyo, Japan","institution_ids":["https://openalex.org/I150744194"]},{"raw_affiliation_string":"AIST-Waseda University Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL), Tokyo, Japan,","institution_ids":["https://openalex.org/I150744194"]},{"raw_affiliation_string":"Department of Electrical Engineering and Bioscience, Faculty of Science and Engineering, Waseda University, Tokyo, Japan,","institution_ids":["https://openalex.org/I150744194"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076918154","display_name":"Yuki Ueno","orcid":"https://orcid.org/0000-0002-7226-4967"},"institutions":[{"id":"https://openalex.org/I150744194","display_name":"Waseda University","ror":"https://ror.org/00ntfnx83","country_code":"JP","type":"education","lineage":["https://openalex.org/I150744194"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yuki Ueno","raw_affiliation_strings":["AIST-Waseda University Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL) , Tokyo, Japan","Department of Electrical Engineering and Bioscience, Faculty of Science and Engineering, Waseda University , Tokyo, Japan","AIST-Waseda University Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL), Tokyo, Japan,","Department of Electrical Engineering and Bioscience, Faculty of Science and Engineering, Waseda University, Tokyo, Japan,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AIST-Waseda University Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL) , Tokyo, Japan","institution_ids":["https://openalex.org/I150744194"]},{"raw_affiliation_string":"Department of Electrical Engineering and Bioscience, Faculty of Science and Engineering, Waseda University , Tokyo, Japan","institution_ids":["https://openalex.org/I150744194"]},{"raw_affiliation_string":"AIST-Waseda University Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL), Tokyo, Japan,","institution_ids":["https://openalex.org/I150744194"]},{"raw_affiliation_string":"Department of Electrical Engineering and Bioscience, Faculty of Science and Engineering, Waseda University, Tokyo, Japan,","institution_ids":["https://openalex.org/I150744194"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085566781","display_name":"Tsukasa Fukunaga","orcid":"https://orcid.org/0000-0003-4442-6049"},"institutions":[{"id":"https://openalex.org/I150744194","display_name":"Waseda University","ror":"https://ror.org/00ntfnx83","country_code":"JP","type":"education","lineage":["https://openalex.org/I150744194"]},{"id":"https://openalex.org/I161296585","display_name":"Tokyo University of Science","ror":"https://ror.org/05sj3n476","country_code":"JP","type":"education","lineage":["https://openalex.org/I161296585"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tsukasa Fukunaga","raw_affiliation_strings":["Department of Computer Science, Graduate School of Information Science and Technology, The University of Tokyo , Tokyo, Japan","Department of Electrical Engineering and Bioscience, Faculty of Science and Engineering, Waseda University , Tokyo, Japan","Department of Electrical Engineering and Bioscience, Faculty of Science and Engineering, Waseda University, Tokyo, Japan,","Department of Computer Science, Graduate School of Information Science and Technology, The University of Tokyo, Tokyo, Japan,"],"raw_orcid":"https://orcid.org/0000-0003-4442-6049","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Graduate School of Information Science and Technology, The University of Tokyo , Tokyo, Japan","institution_ids":["https://openalex.org/I161296585","https://openalex.org/I74801974"]},{"raw_affiliation_string":"Department of Electrical Engineering and Bioscience, Faculty of Science and Engineering, Waseda University , Tokyo, Japan","institution_ids":["https://openalex.org/I150744194"]},{"raw_affiliation_string":"Department of Electrical Engineering and Bioscience, Faculty of Science and Engineering, Waseda University, Tokyo, Japan,","institution_ids":["https://openalex.org/I150744194"]},{"raw_affiliation_string":"Department of Computer Science, Graduate School of Information Science and Technology, The University of Tokyo, Tokyo, Japan,","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025857432","display_name":"Michiaki Hamada","orcid":"https://orcid.org/0000-0001-9466-1034"},"institutions":[{"id":"https://openalex.org/I150744194","display_name":"Waseda University","ror":"https://ror.org/00ntfnx83","country_code":"JP","type":"education","lineage":["https://openalex.org/I150744194"]},{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]},{"id":"https://openalex.org/I80188885","display_name":"Nippon Medical School","ror":"https://ror.org/00krab219","country_code":"JP","type":"education","lineage":["https://openalex.org/I80188885"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Michiaki Hamada","raw_affiliation_strings":["AIST-Waseda University Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL) , Tokyo, Japan","Artificial Intelligence Research Center, National Institute of Advanced Industrial Science and Technology (AIST) , Tokyo, Japan","Department of Electrical Engineering and Bioscience, Faculty of Science and Engineering, Waseda University , Tokyo, Japan","Graduate School of Medicine, Nippon Medical School , Tokyo, Japan","AIST-Waseda University Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL), Tokyo, Japan,","Department of Electrical Engineering and Bioscience, Faculty of Science and Engineering, Waseda University, Tokyo, Japan,","Artificial Intelligence Research Center, National Institute of Advanced Industrial Science and Technology (AIST), Tokyo, Japan and"],"raw_orcid":"https://orcid.org/0000-0001-9466-1034","affiliations":[{"raw_affiliation_string":"AIST-Waseda University Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL) , Tokyo, Japan","institution_ids":["https://openalex.org/I150744194"]},{"raw_affiliation_string":"Artificial Intelligence Research Center, National Institute of Advanced Industrial Science and Technology (AIST) , Tokyo, Japan","institution_ids":["https://openalex.org/I73613424"]},{"raw_affiliation_string":"Department of Electrical Engineering and Bioscience, Faculty of Science and Engineering, Waseda University , Tokyo, Japan","institution_ids":["https://openalex.org/I150744194"]},{"raw_affiliation_string":"Graduate School of Medicine, Nippon Medical School , Tokyo, Japan","institution_ids":["https://openalex.org/I80188885"]},{"raw_affiliation_string":"AIST-Waseda University Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL), Tokyo, Japan,","institution_ids":["https://openalex.org/I150744194"]},{"raw_affiliation_string":"Department of Electrical Engineering and Bioscience, Faculty of Science and Engineering, Waseda University, Tokyo, Japan,","institution_ids":["https://openalex.org/I150744194"]},{"raw_affiliation_string":"Artificial Intelligence Research Center, National Institute of Advanced Industrial Science and Technology (AIST), Tokyo, Japan and","institution_ids":["https://openalex.org/I73613424"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5025857432"],"corresponding_institution_ids":["https://openalex.org/I150744194","https://openalex.org/I73613424","https://openalex.org/I80188885"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.6953,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.6365267,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"35","issue":"22","first_page":"4543","last_page":"4552"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.8529000282287598,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.8529000282287598,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.028599999845027924,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11901","display_name":"Bayesian Methods and Mixture Models","score":0.014700000174343586,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.7318958640098572},{"id":"https://openalex.org/keywords/latent-dirichlet-allocation","display_name":"Latent Dirichlet allocation","score":0.6070065498352051},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5545111894607544},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5462429523468018},{"id":"https://openalex.org/keywords/bayes-theorem","display_name":"Bayes' theorem","score":0.5291894674301147},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.4534003436565399},{"id":"https://openalex.org/keywords/mutation-rate","display_name":"Mutation rate","score":0.4178137481212616},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3981911540031433},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3913162350654602},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30378687381744385},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.22588574886322021},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.22484713792800903},{"id":"https://openalex.org/keywords/topic-model","display_name":"Topic model","score":0.1564050316810608},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09549304842948914}],"concepts":[{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.7318958640098572},{"id":"https://openalex.org/C500882744","wikidata":"https://www.wikidata.org/wiki/Q269236","display_name":"Latent Dirichlet allocation","level":3,"score":0.6070065498352051},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5545111894607544},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5462429523468018},{"id":"https://openalex.org/C207201462","wikidata":"https://www.wikidata.org/wiki/Q182505","display_name":"Bayes' theorem","level":3,"score":0.5291894674301147},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.4534003436565399},{"id":"https://openalex.org/C98638677","wikidata":"https://www.wikidata.org/wiki/Q2067051","display_name":"Mutation rate","level":3,"score":0.4178137481212616},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3981911540031433},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3913162350654602},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30378687381744385},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.22588574886322021},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.22484713792800903},{"id":"https://openalex.org/C171686336","wikidata":"https://www.wikidata.org/wiki/Q3532085","display_name":"Topic model","level":2,"score":0.1564050316810608},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09549304842948914}],"mesh":[{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz266","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz266","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/22/4543/30706955/btz266.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30993319","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30993319","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:5823507","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6853711","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz266","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz266","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/22/4543/30706955/btz266.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1638334167","display_name":null,"funder_award_id":"JP16H05879","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G2952512416","display_name":null,"funder_award_id":"JP16H01318","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G32426276","display_name":null,"funder_award_id":"JP16H05879","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G3265727369","display_name":null,"funder_award_id":"JPMJCR1881","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G3584406041","display_name":null,"funder_award_id":"JP16H02484","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G4532089706","display_name":null,"funder_award_id":"JP16H02484","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G4837072799","display_name":null,"funder_award_id":"JP17K20032","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G508928944","display_name":null,"funder_award_id":"JP18KT0016","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G541276348","display_name":null,"funder_award_id":"JP17K20032","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G547548319","display_name":null,"funder_award_id":"JPMJCR1881","funder_id":"https://openalex.org/F4320338075","funder_display_name":"Core Research for Evolutional Science and Technology"},{"id":"https://openalex.org/G553283399","display_name":null,"funder_award_id":"JP18KT0016","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G6718509927","display_name":null,"funder_award_id":"CREST","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G7879866177","display_name":null,"funder_award_id":"CREST","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G8869625558","display_name":null,"funder_award_id":"JP16H01318","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320320912","display_name":"Ministry of Education, Culture, Sports, Science and Technology","ror":"https://ror.org/048rj2z13"},{"id":"https://openalex.org/F4320322638","display_name":"Waseda University","ror":"https://ror.org/00ntfnx83"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"},{"id":"https://openalex.org/F4320338065","display_name":"Institute of Genetics","ror":"https://ror.org/03gwhmn95"},{"id":"https://openalex.org/F4320338075","display_name":"Core Research for Evolutional Science and Technology","ror":"https://ror.org/00097mb19"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2938712064.pdf","grobid_xml":"https://content.openalex.org/works/W2938712064.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W592645631","https://openalex.org/W1604315162","https://openalex.org/W1726806267","https://openalex.org/W1880262756","https://openalex.org/W1997220790","https://openalex.org/W2008255210","https://openalex.org/W2015049472","https://openalex.org/W2020699933","https://openalex.org/W2023568503","https://openalex.org/W2043969094","https://openalex.org/W2049455664","https://openalex.org/W2057839707","https://openalex.org/W2059300459","https://openalex.org/W2079713049","https://openalex.org/W2116350082","https://openalex.org/W2118151336","https://openalex.org/W2129136620","https://openalex.org/W2145606954","https://openalex.org/W2148856719","https://openalex.org/W2152061559","https://openalex.org/W2158065648","https://openalex.org/W2159522138","https://openalex.org/W2171353991","https://openalex.org/W2173818354","https://openalex.org/W2329659234","https://openalex.org/W2344657883","https://openalex.org/W2512945549","https://openalex.org/W2800414575","https://openalex.org/W2804444878","https://openalex.org/W2952767051","https://openalex.org/W2953163445","https://openalex.org/W3173193424","https://openalex.org/W4231510805","https://openalex.org/W4233135949","https://openalex.org/W6639619044","https://openalex.org/W6751998237"],"related_works":["https://openalex.org/W3107650560","https://openalex.org/W3126382579","https://openalex.org/W4317422773","https://openalex.org/W4315588616","https://openalex.org/W2810542905","https://openalex.org/W3123667230","https://openalex.org/W4243064001","https://openalex.org/W2129350855","https://openalex.org/W2888805565","https://openalex.org/W3096554474"],"abstract_inverted_index":{"MOTIVATION:":[0],"A":[1],"cancer":[2],"genome":[3],"includes":[4],"many":[5,199],"mutations":[6],"derived":[7],"from":[8],"various":[9],"mutagens":[10],"and":[11,30,70,101,230],"mutational":[12,24,33],"processes,":[13],"leading":[14],"to":[15,27,94,156],"specific":[16],"mutation":[17,48,78,99,106,124,144,154,159,183,196,201,215],"patterns.":[18,145],"It":[19],"is":[20,41,50,108],"known":[21],"that":[22,161,175,203],"each":[23],"process":[25,34],"leads":[26],"characteristic":[28],"mutations,":[29,38],"when":[31],"a":[32,43,75,116,140,168],"has":[35],"preferences":[36],"for":[37,54,119,138,152,194],"this":[39,112,235],"situation":[40],"called":[42],"'mutation":[44],"signature.'":[45],"Identification":[46],"of":[47,56,77,98,105,123,143,182],"signatures":[49,107,155,160,202,216],"an":[51,87],"important":[52],"task":[53],"elucidation":[55],"carcinogenic":[57],"mechanisms.":[58],"In":[59,111,146,167],"previous":[60],"studies,":[61],"analyses":[62,151],"with":[63,128,170,191,217],"statistical":[64],"approaches":[65,85],"(e.g.":[66],"non-negative":[67],"matrix":[68],"factorization":[69],"latent":[71],"Dirichlet":[72,126],"allocation)":[73],"revealed":[74,198],"number":[76,97,122,142,181],"signatures.":[79,184],"Nonetheless,":[80],"strictly":[81],"speaking,":[82],"these":[83],"existing":[84],"employ":[86],"ad":[88],"hoc":[89],"method":[90,118,177,188],"or":[91],"incorrect":[92],"approximation":[93],"estimate":[95],"the":[96,102,121,179,213,226,241],"signatures,":[100],"whole":[103],"picture":[104],"unclear.":[109],"RESULTS:":[110],"study,":[113],"we":[114,148,173],"present":[115],"novel":[117,158],"estimating":[120],"signatures-latent":[125],"allocation":[127],"variational":[129,133],"Bayes":[130],"inference":[131],"(VB-LDA)-where":[132],"lower":[134],"bounds":[135],"are":[136,220,248],"utilized":[137,233],"finding":[139],"plausible":[141],"addition,":[147],"performed":[149],"cluster":[150],"estimated":[153,178],"extract":[157],"appear":[162],"in":[163,189,234],"multiple":[164],"primary":[165],"lesions.":[166],"simulation":[169],"artificial":[171],"data,":[172],"confirmed":[174],"our":[176,187],"correct":[180],"Furthermore,":[185],"applying":[186],"combination":[190],"clustering":[192,218],"procedures":[193],"real":[195],"data":[197,247],"interesting":[200],"have":[204],"not":[205],"been":[206],"previously":[207],"reported.":[208],"AVAILABILITY":[209],"AND":[210],"IMPLEMENTATION:":[211],"All":[212,225],"predicted":[214],"results":[219],"freely":[221],"available":[222,249],"at":[223,250],"http://www.f.waseda.jp/mhamada/MS/index.html.":[224],"C++":[227],"source":[228],"code":[229],"python":[231],"scripts":[232],"study":[236],"can":[237],"be":[238],"downloaded":[239],"on":[240],"Internet":[242],"(https://github.com/qkirikigaku/MS_LDA).":[243],"SUPPLEMENTARY":[244],"INFORMATION:":[245],"Supplementary":[246],"Bioinformatics":[251],"online.":[252]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":5}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
