{"id":"https://openalex.org/W2931818966","doi":"https://doi.org/10.1093/bioinformatics/btz238","title":"Developing structural profile matrices for protein secondary structure and solvent accessibility prediction","display_name":"Developing structural profile matrices for protein secondary structure and solvent accessibility prediction","publication_year":2019,"publication_date":"2019-03-29","ids":{"openalex":"https://openalex.org/W2931818966","doi":"https://doi.org/10.1093/bioinformatics/btz238","mag":"2931818966","pmid":"https://pubmed.ncbi.nlm.nih.gov/30937435"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz238","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz238","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082103872","display_name":"Zafer Ayd\u0131n","orcid":"https://orcid.org/0000-0001-7686-6298"},"institutions":[{"id":"https://openalex.org/I95293974","display_name":"Abdullah G\u00fcl University","ror":"https://ror.org/00zdyy359","country_code":"TR","type":"education","lineage":["https://openalex.org/I95293974"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"Zafer Aydin","raw_affiliation_strings":["Department of Computer Engineering, Abdullah Gul University , Kayseri, Turkey"],"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering, Abdullah Gul University , Kayseri, Turkey","institution_ids":["https://openalex.org/I95293974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016997977","display_name":"Nuh Azg\u0131no\u011flu","orcid":"https://orcid.org/0000-0002-4074-7366"},"institutions":[{"id":"https://openalex.org/I1281109512","display_name":"Nev\u015fehir Hac\u0131 Bekta\u015f Veli University","ror":"https://ror.org/019jds967","country_code":"TR","type":"education","lineage":["https://openalex.org/I1281109512"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Nuh Azginoglu","raw_affiliation_strings":["Department of Computer Engineering, Nevsehir Haci Bektas Veli University , Nevsehir, Turkey"],"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering, Nevsehir Haci Bektas Veli University , Nevsehir, Turkey","institution_ids":["https://openalex.org/I1281109512"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067934672","display_name":"Halil Bilgin","orcid":"https://orcid.org/0000-0002-9839-8517"},"institutions":[{"id":"https://openalex.org/I95293974","display_name":"Abdullah G\u00fcl University","ror":"https://ror.org/00zdyy359","country_code":"TR","type":"education","lineage":["https://openalex.org/I95293974"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Halil Ibrahim Bilgin","raw_affiliation_strings":["Department of Computer Engineering, Abdullah Gul University , Kayseri, Turkey"],"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering, Abdullah Gul University , Kayseri, Turkey","institution_ids":["https://openalex.org/I95293974"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021467057","display_name":"Mete \u00c7elik","orcid":"https://orcid.org/0000-0002-1488-1502"},"institutions":[{"id":"https://openalex.org/I87673952","display_name":"Erciyes University","ror":"https://ror.org/047g8vk19","country_code":"TR","type":"education","lineage":["https://openalex.org/I87673952"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Mete Celik","raw_affiliation_strings":["Department of Computer Engineering, Erciyes University , Kayseri, Turkey"],"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering, Erciyes University , Kayseri, Turkey","institution_ids":["https://openalex.org/I87673952"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5082103872"],"corresponding_institution_ids":["https://openalex.org/I95293974"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.3279,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.8941353,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"35","issue":"20","first_page":"4004","last_page":"4010"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7402194738388062},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.6582450270652771},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.654449462890625},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.6304136514663696},{"id":"https://openalex.org/keywords/template","display_name":"Template","score":0.5832135677337646},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.5762753486633301},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5424391627311707},{"id":"https://openalex.org/keywords/structural-similarity","display_name":"Structural similarity","score":0.5104531049728394},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.44292449951171875},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.31053775548934937},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.28320953249931335},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14674529433250427},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.09708940982818604}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7402194738388062},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.6582450270652771},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.654449462890625},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.6304136514663696},{"id":"https://openalex.org/C82714645","wikidata":"https://www.wikidata.org/wiki/Q438331","display_name":"Template","level":2,"score":0.5832135677337646},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.5762753486633301},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5424391627311707},{"id":"https://openalex.org/C139489369","wikidata":"https://www.wikidata.org/wiki/Q770846","display_name":"Structural similarity","level":2,"score":0.5104531049728394},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.44292449951171875},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.31053775548934937},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.28320953249931335},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14674529433250427},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.09708940982818604},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz238","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz238","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30937435","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30937435","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.41999998688697815}],"awards":[{"id":"https://openalex.org/G2907574025","display_name":null,"funder_award_id":"113E550","funder_id":"https://openalex.org/F4320322626","funder_display_name":"T\u00fcrkiye Bilimsel ve Teknolojik Ara\u015ft\u0131rma Kurumu"}],"funders":[{"id":"https://openalex.org/F4320322626","display_name":"T\u00fcrkiye Bilimsel ve Teknolojik Ara\u015ft\u0131rma Kurumu","ror":"https://ror.org/04w9kkr77"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W1987100568","https://openalex.org/W2020148868","https://openalex.org/W2043864894","https://openalex.org/W2051210555","https://openalex.org/W2066914088","https://openalex.org/W2104972430","https://openalex.org/W2117901689","https://openalex.org/W2131474431","https://openalex.org/W2135079066","https://openalex.org/W2139046195","https://openalex.org/W2141915739","https://openalex.org/W2145541064","https://openalex.org/W2153153865","https://openalex.org/W2153414768","https://openalex.org/W2155500844","https://openalex.org/W2158714788","https://openalex.org/W2159940018","https://openalex.org/W2167970914","https://openalex.org/W2224056471","https://openalex.org/W2266510186","https://openalex.org/W2337896928","https://openalex.org/W2635814821","https://openalex.org/W6693313948","https://openalex.org/W6703434277"],"related_works":["https://openalex.org/W3023334178","https://openalex.org/W2036923798","https://openalex.org/W2113993025","https://openalex.org/W2036702733","https://openalex.org/W2946599741","https://openalex.org/W2593264178","https://openalex.org/W2043066834","https://openalex.org/W3171039768","https://openalex.org/W2136856901","https://openalex.org/W2368468053"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1}],"updated_date":"2026-02-27T16:54:17.756197","created_date":"2025-10-10T00:00:00"}
