{"id":"https://openalex.org/W2938032333","doi":"https://doi.org/10.1093/bioinformatics/btz226","title":"Unsupervised discovery of phenotype-specific multi-omics networks","display_name":"Unsupervised discovery of phenotype-specific multi-omics networks","publication_year":2019,"publication_date":"2019-04-05","ids":{"openalex":"https://openalex.org/W2938032333","doi":"https://doi.org/10.1093/bioinformatics/btz226","mag":"2938032333","pmid":"https://pubmed.ncbi.nlm.nih.gov/30957844"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz226","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz226","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6931269","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103845007","display_name":"W. Jenny Shi","orcid":null},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"W Jenny Shi","raw_affiliation_strings":["Computational Bioscience Program, University of Colorado Anschutz Medical Campus , Aurora, CO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Bioscience Program, University of Colorado Anschutz Medical Campus , Aurora, CO, USA","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091400466","display_name":"Yonghua Zhuang","orcid":"https://orcid.org/0000-0002-1822-2395"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yonghua Zhuang","raw_affiliation_strings":["Department of Biostatistics and Informatics, University of Colorado Anschutz Medical Campus , Aurora, CO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Informatics, University of Colorado Anschutz Medical Campus , Aurora, CO, USA","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089600729","display_name":"Pamela Russell","orcid":null},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pamela H Russell","raw_affiliation_strings":["Department of Biostatistics and Informatics, University of Colorado Anschutz Medical Campus , Aurora, CO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Informatics, University of Colorado Anschutz Medical Campus , Aurora, CO, USA","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016076793","display_name":"Brian D. Hobbs","orcid":"https://orcid.org/0000-0001-9564-0745"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian D Hobbs","raw_affiliation_strings":["Channing Division of Network Medicine, Brigham and Women\u2019s Hospital , Boston, MA, USA","Division of Pulmonary and Critical Care Medicine, Brigham and Women\u2019s Hospital , Boston, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Channing Division of Network Medicine, Brigham and Women\u2019s Hospital , Boston, MA, USA","institution_ids":["https://openalex.org/I1283280774"]},{"raw_affiliation_string":"Division of Pulmonary and Critical Care Medicine, Brigham and Women\u2019s Hospital , Boston, MA, USA","institution_ids":["https://openalex.org/I1283280774"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075425205","display_name":"Margaret M. Parker","orcid":"https://orcid.org/0000-0001-6368-5033"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Margaret M Parker","raw_affiliation_strings":["Channing Division of Network Medicine, Brigham and Women\u2019s Hospital , Boston, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Channing Division of Network Medicine, Brigham and Women\u2019s Hospital , Boston, MA, USA","institution_ids":["https://openalex.org/I1283280774"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058359938","display_name":"Peter J. Castaldi","orcid":"https://orcid.org/0000-0001-9920-4713"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter J Castaldi","raw_affiliation_strings":["Channing Division of Network Medicine, Brigham and Women\u2019s Hospital , Boston, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Channing Division of Network Medicine, Brigham and Women\u2019s Hospital , Boston, MA, USA","institution_ids":["https://openalex.org/I1283280774"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032149717","display_name":"Pratyaydipta Rudra","orcid":"https://orcid.org/0000-0002-1089-7283"},"institutions":[{"id":"https://openalex.org/I115475287","display_name":"Oklahoma State University","ror":"https://ror.org/01g9vbr38","country_code":"US","type":"education","lineage":["https://openalex.org/I115475287"]},{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pratyaydipta Rudra","raw_affiliation_strings":["Department of Biostatistics and Informatics, University of Colorado Anschutz Medical Campus , Aurora, CO, USA","Department of Statistics, Oklahoma State University , Stillwater, OK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Informatics, University of Colorado Anschutz Medical Campus , Aurora, CO, USA","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Department of Statistics, Oklahoma State University , Stillwater, OK","institution_ids":["https://openalex.org/I115475287"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042822339","display_name":"Brian Vestal","orcid":"https://orcid.org/0000-0002-3772-1691"},"institutions":[{"id":"https://openalex.org/I3019586173","display_name":"National Jewish Health","ror":"https://ror.org/016z2bp30","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I3019586173"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian Vestal","raw_affiliation_strings":["Center for Genes, Environment & Health, National Jewish Health , Denver, CO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Genes, Environment & Health, National Jewish Health , Denver, CO, USA","institution_ids":["https://openalex.org/I3019586173","https://openalex.org/I921990950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059655447","display_name":"Craig P. Hersh","orcid":"https://orcid.org/0000-0002-1342-4334"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Craig P Hersh","raw_affiliation_strings":["Channing Division of Network Medicine, Brigham and Women\u2019s Hospital , Boston, MA, USA","Division of Pulmonary and Critical Care Medicine, Brigham and Women\u2019s Hospital , Boston, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Channing Division of Network Medicine, Brigham and Women\u2019s Hospital , Boston, MA, USA","institution_ids":["https://openalex.org/I1283280774"]},{"raw_affiliation_string":"Division of Pulmonary and Critical Care Medicine, Brigham and Women\u2019s Hospital , Boston, MA, USA","institution_ids":["https://openalex.org/I1283280774"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072994077","display_name":"Laura Saba","orcid":"https://orcid.org/0000-0001-9649-1294"},"institutions":[{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Laura M Saba","raw_affiliation_strings":["Department of Pharmaceutical Sciences, University of Colorado , Aurora, CO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Sciences, University of Colorado , Aurora, CO, USA","institution_ids":["https://openalex.org/I921990950"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022404035","display_name":"Katerina Kechris","orcid":"https://orcid.org/0000-0002-3725-5459"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Katerina Kechris","raw_affiliation_strings":["Department of Biostatistics and Informatics, University of Colorado Anschutz Medical Campus , Aurora, CO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Informatics, University of Colorado Anschutz Medical Campus , Aurora, CO, USA","institution_ids":["https://openalex.org/I51713134"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5022404035"],"corresponding_institution_ids":["https://openalex.org/I51713134"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.4914,"has_fulltext":false,"cited_by_count":39,"citation_normalized_percentile":{"value":0.82390805,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"35","issue":"21","first_page":"4336","last_page":"4343"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.5997999906539917,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.5997999906539917,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.17949999868869781,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.046799998730421066,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.6473439335823059},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6115217804908752},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.5973271131515503},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.5266499519348145},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4522190988063812},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.42697155475616455},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.38129404187202454},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19088542461395264},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11513474583625793}],"concepts":[{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.6473439335823059},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6115217804908752},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.5973271131515503},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.5266499519348145},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4522190988063812},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.42697155475616455},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.38129404187202454},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19088542461395264},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11513474583625793}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz226","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz226","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30957844","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30957844","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6931269","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6931269","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:6931269","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6931269","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.47999998927116394,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G1158324997","display_name":null,"funder_award_id":"K08 HL136928","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G1425665887","display_name":null,"funder_award_id":"R21 HL140376","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G166213354","display_name":null,"funder_award_id":"T15 LM009451","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G2644038179","display_name":null,"funder_award_id":"U01 HL089897","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G360950031","display_name":null,"funder_award_id":"R01 HL124233","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G46143751","display_name":null,"funder_award_id":"R01 HL126596","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G5180013511","display_name":null,"funder_award_id":"R01 HL137995","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G5426670669","display_name":null,"funder_award_id":"R24 AA013162","funder_id":"https://openalex.org/F4320337330","funder_display_name":"National Institute on Alcohol Abuse and Alcoholism"},{"id":"https://openalex.org/G5861375725","display_name":null,"funder_award_id":"U01 HL089856","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G7032399609","display_name":null,"funder_award_id":"R01 HL130512","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G7698072323","display_name":null,"funder_award_id":"P30 DA044223","funder_id":"https://openalex.org/F4320337347","funder_display_name":"National Institute on Drug Abuse"},{"id":"https://openalex.org/G7976888346","display_name":null,"funder_award_id":"R01 HL125583","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G8112079339","display_name":null,"funder_award_id":"R01 AA021131","funder_id":"https://openalex.org/F4320337330","funder_display_name":"National Institute on Alcohol Abuse and Alcoholism"}],"funders":[{"id":"https://openalex.org/F4320308759","display_name":"Francis Family Foundation","ror":"https://ror.org/0299hbx29"},{"id":"https://openalex.org/F4320337330","display_name":"National Institute on Alcohol Abuse and Alcoholism","ror":"https://ror.org/02jzrsm59"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320337347","display_name":"National Institute on Drug Abuse","ror":"https://ror.org/00fq5cm18"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":66,"referenced_works":["https://openalex.org/W1551559837","https://openalex.org/W1864161604","https://openalex.org/W1966327575","https://openalex.org/W1967551800","https://openalex.org/W1968486566","https://openalex.org/W1972898510","https://openalex.org/W1987219048","https://openalex.org/W1993418188","https://openalex.org/W2008929650","https://openalex.org/W2023461603","https://openalex.org/W2025341678","https://openalex.org/W2028159081","https://openalex.org/W2036010272","https://openalex.org/W2041713290","https://openalex.org/W2050042131","https://openalex.org/W2053404654","https://openalex.org/W2065760681","https://openalex.org/W2069552222","https://openalex.org/W2078919477","https://openalex.org/W2082907106","https://openalex.org/W2083905132","https://openalex.org/W2095898243","https://openalex.org/W2098290597","https://openalex.org/W2100714130","https://openalex.org/W2105351532","https://openalex.org/W2108191052","https://openalex.org/W2112814716","https://openalex.org/W2117014232","https://openalex.org/W2117321698","https://openalex.org/W2120572720","https://openalex.org/W2123250471","https://openalex.org/W2132132957","https://openalex.org/W2136128497","https://openalex.org/W2147881852","https://openalex.org/W2148294117","https://openalex.org/W2158021558","https://openalex.org/W2171304795","https://openalex.org/W2171398108","https://openalex.org/W2203621986","https://openalex.org/W2258675270","https://openalex.org/W2258717577","https://openalex.org/W2274495055","https://openalex.org/W2326922953","https://openalex.org/W2345371524","https://openalex.org/W2399264881","https://openalex.org/W2418706671","https://openalex.org/W2518401693","https://openalex.org/W2530955502","https://openalex.org/W2554705260","https://openalex.org/W2586050845","https://openalex.org/W2597573949","https://openalex.org/W2604844899","https://openalex.org/W2611138580","https://openalex.org/W2615675311","https://openalex.org/W2624701078","https://openalex.org/W2765427642","https://openalex.org/W2791593556","https://openalex.org/W2791975541","https://openalex.org/W2797835872","https://openalex.org/W2800613812","https://openalex.org/W2900044275","https://openalex.org/W2943148964","https://openalex.org/W2950985821","https://openalex.org/W2951209146","https://openalex.org/W3099521927","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W177137871","https://openalex.org/W4403685181","https://openalex.org/W4292302930","https://openalex.org/W4386960635","https://openalex.org/W2594649246","https://openalex.org/W5284979","https://openalex.org/W3149361930","https://openalex.org/W4245853730","https://openalex.org/W3195112886","https://openalex.org/W2590543013"],"abstract_inverted_index":{"MOTIVATION:":[0],"Complex":[1],"diseases":[2],"often":[3],"involve":[4],"a":[5,65,83,100,192],"wide":[6],"spectrum":[7],"of":[8,13,23,26,57,86,148,194,214,219],"phenotypic":[9,60],"traits.":[10,61],"Better":[11],"understanding":[12,22],"the":[14,24,27,30,55,97,153,159,178,220,240],"biological":[15],"mechanisms":[16],"relevant":[17,58,150],"to":[18,96,120,134,177,191,206],"each":[19],"trait":[20],"promotes":[21],"etiology":[25],"disease":[28,140],"and":[29,34,47,88,126,142,158,196,235],"potential":[31,218],"for":[32,75,89,156,163],"targeted":[33],"effective":[35],"treatment":[36],"plans.":[37],"There":[38],"have":[39],"been":[40],"many":[41,223],"efforts":[42],"towards":[43],"omics":[44,78,171,195],"data":[45,79,198,247],"integration":[46,127],"network":[48,72,124],"reconstruction,":[49],"but":[50],"limited":[51],"work":[52],"has":[53,114],"examined":[54],"incorporation":[56],"(quantitative)":[59],"RESULTS:":[62],"We":[63],"propose":[64],"novel":[66],"technique,":[67],"sparse":[68],"multiple":[69,77,208],"canonical":[70],"correlation":[71],"analysis":[73],"(SmCCNet),":[74],"integrating":[76],"types":[80],"along":[81],"with":[82],"quantitative":[84,209],"phenotype":[85,210],"interest,":[87],"constructing":[90],"multi-omics":[91],"networks":[92],"that":[93,112,173],"are":[94,248],"specific":[95],"phenotype.":[98],"As":[99],"case":[101],"study,":[102],"we":[103,110,145],"focus":[104,183],"on":[105,136,184,239],"miRNA-mRNA":[106,185],"networks.":[107],"Through":[108],"simulations,":[109],"demonstrate":[111],"SmCCNet":[113,133,188,215,229],"better":[115],"overall":[116],"prediction":[117],"performance":[118],"compared":[119],"popular":[121],"gene":[122],"expression":[123],"construction":[125],"approaches":[128],"under":[129],"realistic":[130],"settings.":[131],"Applying":[132],"studies":[135],"chronic":[137],"obstructive":[138],"pulmonary":[139],"(COPD)":[141],"breast":[143,164],"cancer,":[144],"found":[146],"enrichment":[147],"known":[149,170],"pathways":[151],"(e.g.":[152],"Cadherin":[154],"pathway":[155,162],"COPD":[157],"interferon-gamma":[160],"signaling":[161],"cancer)":[165],"as":[166,168],"well":[167],"less":[169],"features":[172],"may":[174],"be":[175,203],"important":[176],"diseases.":[179],"Although":[180],"those":[181],"applications":[182],"co-expression":[186],"networks,":[187],"is":[189,231,236],"applicable":[190],"variety":[193],"other":[197],"types.":[199],"It":[200],"can":[201],"also":[202],"easily":[204],"generalized":[205],"incorporate":[207],"simultaneously.":[211],"The":[212,228],"versatility":[213],"suggests":[216],"great":[217],"approach":[221],"in":[222,233],"areas.":[224],"AVAILABILITY":[225],"AND":[226],"IMPLEMENTATION:":[227],"algorithm":[230],"written":[232],"R,":[234],"freely":[237],"available":[238,249],"web":[241],"at":[242,250],"https://cran.r-project.org/web/packages/SmCCNet/index.html.":[243],"SUPPLEMENTARY":[244],"INFORMATION:":[245],"Supplementary":[246],"Bioinformatics":[251],"online.":[252]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":12},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":3}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
