{"id":"https://openalex.org/W4250483256","doi":"https://doi.org/10.1093/bioinformatics/btz216","title":"VCPA: genomic variant calling pipeline and data management tool for Alzheimer\u2019s Disease Sequencing Project","display_name":"VCPA: genomic variant calling pipeline and data management tool for Alzheimer\u2019s Disease Sequencing Project","publication_year":2019,"publication_date":"2019-04-19","ids":{"openalex":"https://openalex.org/W4250483256","doi":"https://doi.org/10.1093/bioinformatics/btz216"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz216","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz216","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/11/1985/28759309/btz216.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/11/1985/28759309/btz216.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035759614","display_name":"Yuk Yee Leung","orcid":"https://orcid.org/0000-0002-3047-5440"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yuk Yee Leung","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019728589","display_name":"Otto Valladares","orcid":"https://orcid.org/0000-0001-8055-2187"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Otto Valladares","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000622862","display_name":"Yi\u2010Fan Chou","orcid":"https://orcid.org/0000-0002-9932-7091"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yi-Fan Chou","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009773453","display_name":"Han\u2010Jen Lin","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Han-Jen Lin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039340118","display_name":"Amanda B Kuzma","orcid":"https://orcid.org/0000-0002-6064-5420"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Amanda B Kuzma","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080646493","display_name":"Laura B. Cantwell","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Laura Cantwell","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080395878","display_name":"Liming Qu","orcid":"https://orcid.org/0000-0002-9240-8411"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Liming Qu","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042296509","display_name":"Prabhakaran Gangadharan","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Prabhakaran Gangadharan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008484513","display_name":"William Salerno","orcid":"https://orcid.org/0000-0003-2975-4108"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"William J Salerno","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091305213","display_name":"Gerard D. Schellenberg","orcid":"https://orcid.org/0000-0003-1115-2475"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gerard D Schellenberg","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5038370606","display_name":"Li\u2010San Wang","orcid":"https://orcid.org/0000-0002-3684-0031"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Li-San Wang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.4829,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.71411713,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"35","issue":"11","first_page":"1985","last_page":"1985"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.6347000002861023,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.6347000002861023,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T14393","display_name":"Health, Environment, Cognitive Aging","score":0.6187999844551086,"subfield":{"id":"https://openalex.org/subfields/2307","display_name":"Health, Toxicology and Mutagenesis"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.5964000225067139,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6924165487289429},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49948859214782715},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4715732932090759},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.444419264793396},{"id":"https://openalex.org/keywords/genomic-sequencing","display_name":"Genomic sequencing","score":0.44164854288101196},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.42210260033607483},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3097228407859802},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.259846568107605},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.2021295428276062},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12373760342597961},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10722273588180542}],"concepts":[{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6924165487289429},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49948859214782715},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4715732932090759},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.444419264793396},{"id":"https://openalex.org/C2994067223","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"Genomic sequencing","level":4,"score":0.44164854288101196},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.42210260033607483},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3097228407859802},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.259846568107605},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.2021295428276062},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12373760342597961},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10722273588180542}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1093/bioinformatics/btz216","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz216","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/11/1985/28759309/btz216.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz216","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz216","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/11/1985/28759309/btz216.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W3037187668","https://openalex.org/W4234772502","https://openalex.org/W2380685755","https://openalex.org/W2252100032","https://openalex.org/W2963436428","https://openalex.org/W2734796617","https://openalex.org/W2102405864","https://openalex.org/W3034087822","https://openalex.org/W2477982797","https://openalex.org/W2171591485"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
