{"id":"https://openalex.org/W2924234733","doi":"https://doi.org/10.1093/bioinformatics/btz204","title":"maTE: discovering expressed interactions between microRNAs and their targets","display_name":"maTE: discovering expressed interactions between microRNAs and their targets","publication_year":2019,"publication_date":"2019-03-19","ids":{"openalex":"https://openalex.org/W2924234733","doi":"https://doi.org/10.1093/bioinformatics/btz204","mag":"2924234733","pmid":"https://pubmed.ncbi.nlm.nih.gov/30895309"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz204","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz204","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091900270","display_name":"Malik Yousef","orcid":"https://orcid.org/0000-0001-8780-6303"},"institutions":[{"id":"https://openalex.org/I4210138950","display_name":"Zefat Academic College","ror":"https://ror.org/03syp5w68","country_code":"IL","type":"education","lineage":["https://openalex.org/I4210138950"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Malik Yousef","raw_affiliation_strings":["Department of Community Information Systems, Zefat Academic College , Zefat, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Community Information Systems, Zefat Academic College , Zefat, Israel","institution_ids":["https://openalex.org/I4210138950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057776421","display_name":"Loai AbdAllah","orcid":null},"institutions":[{"id":"https://openalex.org/I116660002","display_name":"Max Stern Academic College of Emek Yezreel","ror":"https://ror.org/05qz2dz14","country_code":"IL","type":"education","lineage":["https://openalex.org/I116660002"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Loai Abdallah","raw_affiliation_strings":["Department of Information Systems, The Max Stern Yezreel Valley Academic College , Yezreel, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Information Systems, The Max Stern Yezreel Valley Academic College , Yezreel, Israel","institution_ids":["https://openalex.org/I116660002"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043036637","display_name":"Jens Allmer","orcid":"https://orcid.org/0000-0002-2164-7335"},"institutions":[{"id":"https://openalex.org/I4210153885","display_name":"Institute of Bioinformatics and Applied Biotechnology","ror":"https://ror.org/04qcpkd70","country_code":"IN","type":"facility","lineage":["https://openalex.org/I4210153885"]},{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["IN","NL"],"is_corresponding":false,"raw_author_name":"Jens Allmer","raw_affiliation_strings":["Applied Bioinformatics , Bioscience","Horticulture, Bioscience, Wageningen University and Research , Wageningen, the Netherlands"],"affiliations":[{"raw_affiliation_string":"Applied Bioinformatics , Bioscience","institution_ids":["https://openalex.org/I4210153885"]},{"raw_affiliation_string":"Horticulture, Bioscience, Wageningen University and Research , Wageningen, the Netherlands","institution_ids":["https://openalex.org/I913481162"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5091900270"],"corresponding_institution_ids":["https://openalex.org/I4210138950"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.7587,"has_fulltext":false,"cited_by_count":57,"citation_normalized_percentile":{"value":0.83300435,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"35","issue":"20","first_page":"4020","last_page":"4028"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.8634911179542542},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.648772120475769},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6329829692840576},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5894212126731873},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.5173289179801941},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.4916377663612366},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.4139168858528137},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.39021599292755127},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.34145790338516235},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2232053577899933},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.13628721237182617}],"concepts":[{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.8634911179542542},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.648772120475769},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6329829692840576},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5894212126731873},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.5173289179801941},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.4916377663612366},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.4139168858528137},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.39021599292755127},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.34145790338516235},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2232053577899933},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.13628721237182617}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz204","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz204","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30895309","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30895309","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:wur:oai:library.wur.nl:wurpubs/553321","is_oa":false,"landing_page_url":"https://research.wur.nl/en/publications/mate-discovering-expressed-interactions-between-micrornas-and-the","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 35(20), 4020 - 2028","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":46,"referenced_works":["https://openalex.org/W71547456","https://openalex.org/W575485810","https://openalex.org/W1605823636","https://openalex.org/W1835740130","https://openalex.org/W1982191152","https://openalex.org/W1995082021","https://openalex.org/W2006676204","https://openalex.org/W2022732522","https://openalex.org/W2040506788","https://openalex.org/W2058809590","https://openalex.org/W2065831401","https://openalex.org/W2068474065","https://openalex.org/W2074920675","https://openalex.org/W2080038616","https://openalex.org/W2095619968","https://openalex.org/W2096525273","https://openalex.org/W2104645403","https://openalex.org/W2112192177","https://openalex.org/W2116041602","https://openalex.org/W2121417079","https://openalex.org/W2135836598","https://openalex.org/W2137522370","https://openalex.org/W2138563170","https://openalex.org/W2157039533","https://openalex.org/W2174734928","https://openalex.org/W2258129851","https://openalex.org/W2341128841","https://openalex.org/W2418959584","https://openalex.org/W2419118559","https://openalex.org/W2489192555","https://openalex.org/W2517132202","https://openalex.org/W2602538792","https://openalex.org/W2610681450","https://openalex.org/W2626479593","https://openalex.org/W2735646495","https://openalex.org/W2756338890","https://openalex.org/W2760930003","https://openalex.org/W2765777860","https://openalex.org/W2767546566","https://openalex.org/W2768072820","https://openalex.org/W2768781242","https://openalex.org/W2789364012","https://openalex.org/W2801260524","https://openalex.org/W2806593469","https://openalex.org/W2910782067","https://openalex.org/W4239678514"],"related_works":["https://openalex.org/W2128583238","https://openalex.org/W2134405083","https://openalex.org/W2049907435","https://openalex.org/W2057742104","https://openalex.org/W2034377088","https://openalex.org/W4283692078","https://openalex.org/W2025542119","https://openalex.org/W2613929436","https://openalex.org/W2347793859","https://openalex.org/W3151254369"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":16},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":4},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-04T08:04:53.788161","created_date":"2025-10-10T00:00:00"}
