{"id":"https://openalex.org/W2922794508","doi":"https://doi.org/10.1093/bioinformatics/btz195","title":"Health assistant: answering your questions anytime from biomedical literature","display_name":"Health assistant: answering your questions anytime from biomedical literature","publication_year":2019,"publication_date":"2019-03-16","ids":{"openalex":"https://openalex.org/W2922794508","doi":"https://doi.org/10.1093/bioinformatics/btz195","mag":"2922794508","pmid":"https://pubmed.ncbi.nlm.nih.gov/30887023"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz195","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz195","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101481925","display_name":"Zanxia Jin","orcid":"https://orcid.org/0000-0002-7990-5544"},"institutions":[{"id":"https://openalex.org/I92403157","display_name":"University of Science and Technology Beijing","ror":"https://ror.org/02egmk993","country_code":"CN","type":"education","lineage":["https://openalex.org/I92403157"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zan-Xia Jin","raw_affiliation_strings":["Department of Computer Science and Technology, School of Computer and Communication Engineering, University of Science and Technology Beijing , Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, School of Computer and Communication Engineering, University of Science and Technology Beijing , Beijing, China","institution_ids":["https://openalex.org/I92403157"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100385138","display_name":"Bowen Zhang","orcid":"https://orcid.org/0000-0002-3581-9476"},"institutions":[{"id":"https://openalex.org/I45928872","display_name":"Alibaba Group (China)","ror":"https://ror.org/00k642b80","country_code":"CN","type":"company","lineage":["https://openalex.org/I45928872"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bo-Wen Zhang","raw_affiliation_strings":["Turing Lab, Alibaba Group, Hangzhou , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Turing Lab, Alibaba Group, Hangzhou , China","institution_ids":["https://openalex.org/I45928872"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5117698914","display_name":"Fan Fang","orcid":"https://orcid.org/0000-0003-0382-1990"},"institutions":[{"id":"https://openalex.org/I92403157","display_name":"University of Science and Technology Beijing","ror":"https://ror.org/02egmk993","country_code":"CN","type":"education","lineage":["https://openalex.org/I92403157"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fan Fang","raw_affiliation_strings":["Department of Computer Science and Technology, School of Computer and Communication Engineering, University of Science and Technology Beijing , Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, School of Computer and Communication Engineering, University of Science and Technology Beijing , Beijing, China","institution_ids":["https://openalex.org/I92403157"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100682935","display_name":"Lele Zhang","orcid":"https://orcid.org/0000-0002-5595-3103"},"institutions":[{"id":"https://openalex.org/I92403157","display_name":"University of Science and Technology Beijing","ror":"https://ror.org/02egmk993","country_code":"CN","type":"education","lineage":["https://openalex.org/I92403157"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Le-Le Zhang","raw_affiliation_strings":["Department of Computer Science and Technology, School of Computer and Communication Engineering, University of Science and Technology Beijing , Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, School of Computer and Communication Engineering, University of Science and Technology Beijing , Beijing, China","institution_ids":["https://openalex.org/I92403157"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074514262","display_name":"Xu-Cheng Yin","orcid":"https://orcid.org/0000-0003-0023-0220"},"institutions":[{"id":"https://openalex.org/I92403157","display_name":"University of Science and Technology Beijing","ror":"https://ror.org/02egmk993","country_code":"CN","type":"education","lineage":["https://openalex.org/I92403157"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xu-Cheng Yin","raw_affiliation_strings":["Department of Computer Science and Technology, School of Computer and Communication Engineering, University of Science and Technology Beijing , Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, School of Computer and Communication Engineering, University of Science and Technology Beijing , Beijing, China","institution_ids":["https://openalex.org/I92403157"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5101481925"],"corresponding_institution_ids":["https://openalex.org/I92403157"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.5803,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.74806398,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"35","issue":"20","first_page":"4129","last_page":"4139"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.6176000237464905,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.6176000237464905,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.14589999616146088,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13274","display_name":"Expert finding and Q&A systems","score":0.037300001829862595,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8369801044464111},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.7313406467437744},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.580248236656189},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.5701611638069153},{"id":"https://openalex.org/keywords/snippet","display_name":"Snippet","score":0.5511887073516846},{"id":"https://openalex.org/keywords/question-answering","display_name":"Question answering","score":0.5349273681640625},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5146730542182922},{"id":"https://openalex.org/keywords/search-engine","display_name":"Search engine","score":0.47943538427352905},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.43331581354141235},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.391271710395813}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8369801044464111},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.7313406467437744},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.580248236656189},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.5701611638069153},{"id":"https://openalex.org/C2777822670","wikidata":"https://www.wikidata.org/wiki/Q1120538","display_name":"Snippet","level":2,"score":0.5511887073516846},{"id":"https://openalex.org/C44291984","wikidata":"https://www.wikidata.org/wiki/Q1074173","display_name":"Question answering","level":2,"score":0.5349273681640625},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5146730542182922},{"id":"https://openalex.org/C97854310","wikidata":"https://www.wikidata.org/wiki/Q19541","display_name":"Search engine","level":2,"score":0.47943538427352905},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.43331581354141235},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.391271710395813},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz195","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz195","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30887023","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30887023","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.6899999976158142,"display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G4738090328","display_name":null,"funder_award_id":"61806017","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W8349185","https://openalex.org/W1579504521","https://openalex.org/W1928207369","https://openalex.org/W1997642925","https://openalex.org/W2016443621","https://openalex.org/W2031302834","https://openalex.org/W2036237184","https://openalex.org/W2044938180","https://openalex.org/W2048911873","https://openalex.org/W2054070929","https://openalex.org/W2087227067","https://openalex.org/W2088516378","https://openalex.org/W2097925108","https://openalex.org/W2108574809","https://openalex.org/W2144245630","https://openalex.org/W2147008127","https://openalex.org/W2148212498","https://openalex.org/W2205636404","https://openalex.org/W2435953276","https://openalex.org/W2522665461","https://openalex.org/W2554092342","https://openalex.org/W2594902929","https://openalex.org/W2613995098","https://openalex.org/W2770007550","https://openalex.org/W2919960343","https://openalex.org/W2992252352","https://openalex.org/W6600358611","https://openalex.org/W6640038660","https://openalex.org/W6688055524"],"related_works":["https://openalex.org/W1607713096","https://openalex.org/W2116176021","https://openalex.org/W2139771701","https://openalex.org/W1484298060","https://openalex.org/W2097123411","https://openalex.org/W3169572532","https://openalex.org/W2348509553","https://openalex.org/W1716487511","https://openalex.org/W2794433798","https://openalex.org/W2414493777"],"abstract_inverted_index":{"MOTIVATION:":[0],"With":[1],"the":[2,29,34,58,89,93,122,127,135,143],"abundant":[3],"medical":[4],"resources,":[5],"especially":[6],"literature":[7],"available":[8,176],"online,":[9],"it":[10],"is":[11,68,132,175],"possible":[12],"for":[13,115],"people":[14],"to":[15,27,56,71,87,102,120,125,151],"understand":[16],"their":[17],"own":[18,108],"health":[19],"status":[20],"and":[21,50,82,95,112,139,145,155,163],"relevant":[22,90,123],"problems":[23],"autonomously.":[24],"However,":[25],"how":[26],"obtain":[28],"most":[30],"appropriate":[31],"answer":[32,126],"from":[33],"increasingly":[35],"large-scale":[36],"database,":[37],"remains":[38],"a":[39,45,52,65],"great":[40],"challenge.":[41],"Here,":[42],"we":[43],"present":[44],"biomedical":[46,73],"question":[47],"answering":[48],"framework":[49],"implement":[51],"system,":[53,149],"Health":[54,63],"Assistant,":[55,64],"enable":[57],"search":[59,66,83],"process.":[60],"METHODS:":[61],"In":[62],"engine":[67],"firstly":[69],"designed":[70,109],"rank":[72],"documents":[74,99],"based":[75],"on":[76,134,159],"contents.":[77],"Then":[78],"various":[79],"query":[80,110],"processing":[81,111],"techniques":[84],"are":[85,100,118],"utilized":[86],"find":[88],"documents.":[91],"Afterwards,":[92],"titles":[94],"abstracts":[96],"of":[97,147,172],"top-N":[98],"extracted":[101],"generate":[103],"candidate":[104],"snippets.":[105],"Finally,":[106],"our":[107,148,173],"retrieval":[113,162,165],"approaches":[114],"short":[116],"text":[117],"applied":[119],"locate":[121],"snippets":[124],"questions.":[128],"RESULTS:":[129],"Our":[130],"system":[131,174],"evaluated":[133],"BioASQ":[136,152],"benchmark":[137],"datasets,":[138],"experimental":[140],"results":[141],"demonstrate":[142],"effectiveness":[144],"robustness":[146],"compared":[150],"participant":[153],"systems":[154],"some":[156],"state-of-the-art":[157],"methods":[158],"both":[160],"document":[161],"snippet":[164],"tasks.":[166],"AVAILABILITY":[167],"AND":[168],"IMPLEMENTATION:":[169],"A":[170],"demo":[171],"at":[177],"https://github.com/jinzanxia/biomedical-QA.":[178]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
