{"id":"https://openalex.org/W2922063386","doi":"https://doi.org/10.1093/bioinformatics/btz183","title":"Classical scoring functions for docking are unable to exploit large volumes of structural and interaction data","display_name":"Classical scoring functions for docking are unable to exploit large volumes of structural and interaction data","publication_year":2019,"publication_date":"2019-03-13","ids":{"openalex":"https://openalex.org/W2922063386","doi":"https://doi.org/10.1093/bioinformatics/btz183","mag":"2922063386","pmid":"https://pubmed.ncbi.nlm.nih.gov/30873528"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz183","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz183","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100695814","display_name":"Hongjian Li","orcid":"https://orcid.org/0000-0001-8467-638X"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I2800906782","display_name":"Hong Kong Science and Technology Parks Corporation","ror":"https://ror.org/05q8mqd91","country_code":"HK","type":"nonprofit","lineage":["https://openalex.org/I2800906782"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Hongjian Li","raw_affiliation_strings":["CUHK-SDU Joint Laboratory on Reproductive Genetics School of Biomedical Sciences , The Chinese University of Hong Kong, Sha Tin, New Territories, Hong Kong","SDIVF R&D Centre, Hong Kong Science Park , Sha Tin, New Territories, Hong Kong"],"affiliations":[{"raw_affiliation_string":"CUHK-SDU Joint Laboratory on Reproductive Genetics School of Biomedical Sciences , The Chinese University of Hong Kong, Sha Tin, New Territories, Hong Kong","institution_ids":["https://openalex.org/I177725633"]},{"raw_affiliation_string":"SDIVF R&D Centre, Hong Kong Science Park , Sha Tin, New Territories, Hong Kong","institution_ids":["https://openalex.org/I2800906782"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020377956","display_name":"Jiangjun Peng","orcid":"https://orcid.org/0000-0001-9645-5154"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiangjun Peng","raw_affiliation_strings":["School of Mathematics and Statistics, Xi'an Jiaotong University , Xi\u2019an, China"],"affiliations":[{"raw_affiliation_string":"School of Mathematics and Statistics, Xi'an Jiaotong University , Xi\u2019an, China","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080683422","display_name":"Pavel Sidorov","orcid":"https://orcid.org/0000-0001-6462-702X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]},{"id":"https://openalex.org/I4210144608","display_name":"Centre de Recherche en Canc\u00e9rologie de Marseille","ror":"https://ror.org/0494jpz02","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210144608","https://openalex.org/I4210150365"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Pavel Sidorov","raw_affiliation_strings":["Cancer Research Center of Marseille CRCM, INSERM, Institut Paoli-Calmettes , Aix-Marseille University, CNRS, F-13009 Marseille, France"],"affiliations":[{"raw_affiliation_string":"Cancer Research Center of Marseille CRCM, INSERM, Institut Paoli-Calmettes , Aix-Marseille University, CNRS, F-13009 Marseille, France","institution_ids":["https://openalex.org/I4210144608","https://openalex.org/I21491767","https://openalex.org/I154526488","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081013188","display_name":"Yee Leung","orcid":"https://orcid.org/0000-0002-4140-5448"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yee Leung","raw_affiliation_strings":["Institute of Future Cities"],"affiliations":[{"raw_affiliation_string":"Institute of Future Cities","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082233800","display_name":"Kwong\u2010Sak Leung","orcid":null},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Kwong-Sak Leung","raw_affiliation_strings":["Department of Computer Science and Engineering, The Chinese University of Hong Kong , Sha Tin, New Territories, Hong Kong","Institute of Future Cities"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Chinese University of Hong Kong , Sha Tin, New Territories, Hong Kong","institution_ids":["https://openalex.org/I177725633"]},{"raw_affiliation_string":"Institute of Future Cities","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101042717","display_name":"Man-Hon Wong","orcid":null},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Man-Hon Wong","raw_affiliation_strings":["Department of Computer Science and Engineering, The Chinese University of Hong Kong , Sha Tin, New Territories, Hong Kong"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Chinese University of Hong Kong , Sha Tin, New Territories, Hong Kong","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057444662","display_name":"Gang L\u00fc","orcid":"https://orcid.org/0000-0001-5921-1839"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Gang Lu","raw_affiliation_strings":["CUHK-SDU Joint Laboratory on Reproductive Genetics School of Biomedical Sciences , The Chinese University of Hong Kong, Sha Tin, New Territories, Hong Kong"],"affiliations":[{"raw_affiliation_string":"CUHK-SDU Joint Laboratory on Reproductive Genetics School of Biomedical Sciences , The Chinese University of Hong Kong, Sha Tin, New Territories, Hong Kong","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005597587","display_name":"Pedro J. Ballester","orcid":"https://orcid.org/0000-0002-4078-743X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]},{"id":"https://openalex.org/I4210144608","display_name":"Centre de Recherche en Canc\u00e9rologie de Marseille","ror":"https://ror.org/0494jpz02","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210144608","https://openalex.org/I4210150365"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Pedro J Ballester","raw_affiliation_strings":["Cancer Research Center of Marseille CRCM, INSERM, Institut Paoli-Calmettes , Aix-Marseille University, CNRS, F-13009 Marseille, France"],"affiliations":[{"raw_affiliation_string":"Cancer Research Center of Marseille CRCM, INSERM, Institut Paoli-Calmettes , Aix-Marseille University, CNRS, F-13009 Marseille, France","institution_ids":["https://openalex.org/I4210144608","https://openalex.org/I21491767","https://openalex.org/I154526488","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5005597587"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210144608"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":10.3795,"has_fulltext":false,"cited_by_count":100,"citation_normalized_percentile":{"value":0.98598148,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"35","issue":"20","first_page":"3989","last_page":"3995"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9623000025749207,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.9119342565536499},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.6944180130958557},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6629524827003479},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3598053753376007},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.11899018287658691},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.06828391551971436}],"concepts":[{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.9119342565536499},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.6944180130958557},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6629524827003479},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3598053753376007},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.11899018287658691},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.06828391551971436},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz183","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz183","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30873528","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30873528","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:hal-02529716v1","is_oa":false,"landing_page_url":"https://hal.science/hal-02529716","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2019, 35 (20), pp.3989-3995. &#x27E8;10.1093/bioinformatics/btz183&#x27E9;","raw_type":"Journal articles"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322942","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W1527782499","https://openalex.org/W1830364214","https://openalex.org/W1950993160","https://openalex.org/W1974324284","https://openalex.org/W1986994943","https://openalex.org/W1993285168","https://openalex.org/W1993403967","https://openalex.org/W2001722230","https://openalex.org/W2009841182","https://openalex.org/W2014550996","https://openalex.org/W2022998385","https://openalex.org/W2030286884","https://openalex.org/W2044757858","https://openalex.org/W2060320699","https://openalex.org/W2075020622","https://openalex.org/W2108243628","https://openalex.org/W2134967712","https://openalex.org/W2148512505","https://openalex.org/W2336411773","https://openalex.org/W2399340976","https://openalex.org/W2481510159","https://openalex.org/W2521525223","https://openalex.org/W2556851635","https://openalex.org/W2600971009","https://openalex.org/W2741292700","https://openalex.org/W2781821160","https://openalex.org/W2784213390","https://openalex.org/W2792951589","https://openalex.org/W2894566366","https://openalex.org/W2906575507","https://openalex.org/W2911964244","https://openalex.org/W6638776362","https://openalex.org/W6757501596"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W17155033","https://openalex.org/W3207760230","https://openalex.org/W1496222301","https://openalex.org/W4312814274","https://openalex.org/W1590307681","https://openalex.org/W2536018345","https://openalex.org/W4285370786"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":16},{"year":2024,"cited_by_count":21},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":17},{"year":2020,"cited_by_count":19},{"year":2019,"cited_by_count":5}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
