{"id":"https://openalex.org/W2920923857","doi":"https://doi.org/10.1093/bioinformatics/btz181","title":"SCL: a lattice-based approach to infer 3D chromosome structures from single-cell Hi-C data","display_name":"SCL: a lattice-based approach to infer 3D chromosome structures from single-cell Hi-C data","publication_year":2019,"publication_date":"2019-03-12","ids":{"openalex":"https://openalex.org/W2920923857","doi":"https://doi.org/10.1093/bioinformatics/btz181","mag":"2920923857","pmid":"https://pubmed.ncbi.nlm.nih.gov/30865261"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz181","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz181","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/20/3981/30148429/btz181.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/20/3981/30148429/btz181.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082676682","display_name":"Hao Zhu","orcid":"https://orcid.org/0000-0001-7384-3840"},"institutions":[{"id":"https://openalex.org/I44854399","display_name":"University of Southern Mississippi","ror":"https://ror.org/0270vfa57","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I44854399"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hao Zhu","raw_affiliation_strings":["School of Computing Sciences and Computer Engineering, University of Southern Mississippi , Hattiesburg, MS, USA"],"affiliations":[{"raw_affiliation_string":"School of Computing Sciences and Computer Engineering, University of Southern Mississippi , Hattiesburg, MS, USA","institution_ids":["https://openalex.org/I44854399"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100401124","display_name":"Zheng Wang","orcid":"https://orcid.org/0000-0002-8388-6139"},"institutions":[{"id":"https://openalex.org/I145608581","display_name":"University of Miami","ror":"https://ror.org/02dgjyy92","country_code":"US","type":"education","lineage":["https://openalex.org/I145608581"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Zheng Wang","raw_affiliation_strings":["Department of Computer Science, University of Miami , Coral Gables, FL, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Miami , Coral Gables, FL, USA","institution_ids":["https://openalex.org/I145608581"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100401124"],"corresponding_institution_ids":["https://openalex.org/I145608581"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.3742,"has_fulltext":false,"cited_by_count":35,"citation_normalized_percentile":{"value":0.80827563,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"35","issue":"20","first_page":"3981","last_page":"3988"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5349437594413757},{"id":"https://openalex.org/keywords/lattice","display_name":"Lattice (music)","score":0.4841192662715912},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4685289263725281},{"id":"https://openalex.org/keywords/gaussian","display_name":"Gaussian","score":0.4441124498844147},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.44025281071662903},{"id":"https://openalex.org/keywords/simulated-annealing","display_name":"Simulated annealing","score":0.43700987100601196},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3514862656593323},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2553364038467407},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.2532922327518463}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5349437594413757},{"id":"https://openalex.org/C2781204021","wikidata":"https://www.wikidata.org/wiki/Q6497091","display_name":"Lattice (music)","level":2,"score":0.4841192662715912},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4685289263725281},{"id":"https://openalex.org/C163716315","wikidata":"https://www.wikidata.org/wiki/Q901177","display_name":"Gaussian","level":2,"score":0.4441124498844147},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.44025281071662903},{"id":"https://openalex.org/C126980161","wikidata":"https://www.wikidata.org/wiki/Q863783","display_name":"Simulated annealing","level":2,"score":0.43700987100601196},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3514862656593323},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2553364038467407},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.2532922327518463},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022004","descriptor_name":"Chromosome Structures","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022004","descriptor_name":"Chromosome Structures","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022004","descriptor_name":"Chromosome Structures","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btz181","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz181","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/20/3981/30148429/btz181.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30865261","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30865261","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:aquila.usm.edu:student_pubs-1080","is_oa":false,"landing_page_url":"https://aquila.usm.edu/student_pubs/80","pdf_url":null,"source":{"id":"https://openalex.org/S4306402529","display_name":"Aquila Digital Community (University of Southern Mississippi)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I44854399","host_organization_name":"University of Southern Mississippi","host_organization_lineage":["https://openalex.org/I44854399"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Student Publications","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6792089","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6792089","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz181","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz181","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/20/3981/30148429/btz181.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2525969190","display_name":null,"funder_award_id":"R15GM120650","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320309249","display_name":"University of Miami","ror":"https://ror.org/02dgjyy92"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2920923857.pdf","grobid_xml":"https://content.openalex.org/works/W2920923857.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W206985495","https://openalex.org/W1559700605","https://openalex.org/W1965863160","https://openalex.org/W1973062929","https://openalex.org/W1974463674","https://openalex.org/W1984340155","https://openalex.org/W1994536648","https://openalex.org/W2024060531","https://openalex.org/W2044606399","https://openalex.org/W2045716015","https://openalex.org/W2059886783","https://openalex.org/W2082852695","https://openalex.org/W2090037139","https://openalex.org/W2101249563","https://openalex.org/W2108107014","https://openalex.org/W2110174983","https://openalex.org/W2118503070","https://openalex.org/W2138755951","https://openalex.org/W2145619687","https://openalex.org/W2153856160","https://openalex.org/W2154319440","https://openalex.org/W2161151688","https://openalex.org/W2165780114","https://openalex.org/W2292234541","https://openalex.org/W2488849172","https://openalex.org/W2552583736","https://openalex.org/W2559000278","https://openalex.org/W2560082534","https://openalex.org/W2569095710","https://openalex.org/W2582946425","https://openalex.org/W2594764564","https://openalex.org/W2597274540","https://openalex.org/W2765567136","https://openalex.org/W2768310712","https://openalex.org/W2806062033","https://openalex.org/W2889474202","https://openalex.org/W2913594598","https://openalex.org/W6745729319"],"related_works":["https://openalex.org/W2051487156","https://openalex.org/W2073681303","https://openalex.org/W2544423928","https://openalex.org/W2053286651","https://openalex.org/W2025427163","https://openalex.org/W2181743346","https://openalex.org/W2187401768","https://openalex.org/W2181413294","https://openalex.org/W2392013129","https://openalex.org/W2113777112"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
