{"id":"https://openalex.org/W2766623924","doi":"https://doi.org/10.1093/bioinformatics/btz177","title":"Probabilistic count matrix factorization for single cell expression data analysis","display_name":"Probabilistic count matrix factorization for single cell expression data analysis","publication_year":2019,"publication_date":"2019-03-12","ids":{"openalex":"https://openalex.org/W2766623924","doi":"https://doi.org/10.1093/bioinformatics/btz177","mag":"2766623924","pmid":"https://pubmed.ncbi.nlm.nih.gov/30865271"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz177","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz177","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1710.11028","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063715586","display_name":"Ghislain Durif","orcid":"https://orcid.org/0000-0003-2567-1401"},"institutions":[{"id":"https://openalex.org/I4210101348","display_name":"Centre Inria de l'Universit\u00e9 Grenoble Alpes","ror":"https://ror.org/00n8d6z93","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210101348"]},{"id":"https://openalex.org/I4210149092","display_name":"Laboratoire Jean Kuntzmann","ror":"https://ror.org/04ett5b41","country_code":"FR","type":"facility","lineage":["https://openalex.org/I106785703","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210149092","https://openalex.org/I899635006","https://openalex.org/I899635006"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I106785703","display_name":"Institut polytechnique de Grenoble","ror":"https://ror.org/05sbt2524","country_code":"FR","type":"education","lineage":["https://openalex.org/I106785703","https://openalex.org/I899635006"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I899635006","display_name":"Universit\u00e9 Grenoble Alpes","ror":"https://ror.org/02rx3b187","country_code":"FR","type":"education","lineage":["https://openalex.org/I899635006"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Ghislain Durif","raw_affiliation_strings":["Univ Lyon, Universit\u00e9 Lyon 1, CNRS , LBBE UMR 5558, F Villeurbanne, France","Universit\u00e9 Grenoble Alpes, Inria, CNRS, Grenoble INP , LJK UMR 5224, F Grenoble, France","Universit\u00e9 de Montpellier, CNRS , IMAG UMR 5149, F Montpellier, France"],"affiliations":[{"raw_affiliation_string":"Univ Lyon, Universit\u00e9 Lyon 1, CNRS , LBBE UMR 5558, F Villeurbanne, France","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Universit\u00e9 Grenoble Alpes, Inria, CNRS, Grenoble INP , LJK UMR 5224, F Grenoble, France","institution_ids":["https://openalex.org/I4210101348","https://openalex.org/I4210149092","https://openalex.org/I1294671590","https://openalex.org/I106785703","https://openalex.org/I899635006"]},{"raw_affiliation_string":"Universit\u00e9 de Montpellier, CNRS , IMAG UMR 5149, F Montpellier, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012911825","display_name":"Laurent Modolo","orcid":"https://orcid.org/0000-0002-7606-4110"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I113428412","display_name":"\u00c9cole Normale Sup\u00e9rieure de Lyon","ror":"https://ror.org/04zmssz18","country_code":"FR","type":"education","lineage":["https://openalex.org/I113428412","https://openalex.org/I203339264"]}],"countries":["FR","SE"],"is_corresponding":false,"raw_author_name":"Laurent Modolo","raw_affiliation_strings":["Department of Cell and Molecular Biology, Karolinska Institutet , Stockholm, Sweden","Univ Lyon, ENS Lyon, Universit\u00e9 Lyon 1 , CNRS, LBMC UMR 5239, F Lyon, France","Univ Lyon, Universit\u00e9 Lyon 1, CNRS , LBBE UMR 5558, F Villeurbanne, France"],"affiliations":[{"raw_affiliation_string":"Department of Cell and Molecular Biology, Karolinska Institutet , Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"Univ Lyon, ENS Lyon, Universit\u00e9 Lyon 1 , CNRS, LBMC UMR 5239, F Lyon, France","institution_ids":["https://openalex.org/I113428412","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Univ Lyon, Universit\u00e9 Lyon 1, CNRS , LBBE UMR 5558, F Villeurbanne, France","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010892738","display_name":"Jeff E. Mold","orcid":"https://orcid.org/0000-0003-2195-2978"},"institutions":[{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Jeff E Mold","raw_affiliation_strings":["Department of Cell and Molecular Biology, Karolinska Institutet , Stockholm, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Cell and Molecular Biology, Karolinska Institutet , Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071153630","display_name":"Sophie Lambert\u2010Lacroix","orcid":"https://orcid.org/0009-0003-6111-5303"},"institutions":[{"id":"https://openalex.org/I4210136308","display_name":"Translational Innovation in Medicine and Complexity","ror":"https://ror.org/03985kf35","country_code":"FR","type":"facility","lineage":["https://openalex.org/I106785703","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210095849","https://openalex.org/I4210104684","https://openalex.org/I4210136308","https://openalex.org/I4210159245","https://openalex.org/I899635006","https://openalex.org/I899635006"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I899635006","display_name":"Universit\u00e9 Grenoble Alpes","ror":"https://ror.org/02rx3b187","country_code":"FR","type":"education","lineage":["https://openalex.org/I899635006"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sophie Lambert-Lacroix","raw_affiliation_strings":["Universit\u00e9 Grenoble Alpes, CNRS , TIMC-IMAG UMR 5525, F Grenoble, France"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Grenoble Alpes, CNRS , TIMC-IMAG UMR 5525, F Grenoble, France","institution_ids":["https://openalex.org/I4210136308","https://openalex.org/I1294671590","https://openalex.org/I899635006"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056996972","display_name":"Franck Picard","orcid":"https://orcid.org/0000-0001-8084-5481"},"institutions":[{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Franck Picard","raw_affiliation_strings":["Univ Lyon, Universit\u00e9 Lyon 1, CNRS , LBBE UMR 5558, F Villeurbanne, France"],"affiliations":[{"raw_affiliation_string":"Univ Lyon, Universit\u00e9 Lyon 1, CNRS , LBBE UMR 5558, F Villeurbanne, France","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5063715586"],"corresponding_institution_ids":["https://openalex.org/I100532134","https://openalex.org/I106785703","https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210101348","https://openalex.org/I4210135640","https://openalex.org/I4210149092","https://openalex.org/I899635006"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.1471,"has_fulltext":true,"cited_by_count":39,"citation_normalized_percentile":{"value":0.87867104,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"35","issue":"20","first_page":"4011","last_page":"4019"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9682999849319458,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6219477653503418},{"id":"https://openalex.org/keywords/principal-component-analysis","display_name":"Principal component analysis","score":0.5725318789482117},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5679022073745728},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.5590476989746094},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5477197170257568},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.5216348767280579},{"id":"https://openalex.org/keywords/non-negative-matrix-factorization","display_name":"Non-negative matrix factorization","score":0.5149227380752563},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.47611480951309204},{"id":"https://openalex.org/keywords/statistical-model","display_name":"Statistical model","score":0.45576438307762146},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.43067270517349243},{"id":"https://openalex.org/keywords/count-data","display_name":"Count data","score":0.4225204586982727},{"id":"https://openalex.org/keywords/external-data-representation","display_name":"External Data Representation","score":0.4120739996433258},{"id":"https://openalex.org/keywords/matrix-decomposition","display_name":"Matrix decomposition","score":0.40163716673851013},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.34417325258255005},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.33607590198516846},{"id":"https://openalex.org/keywords/poisson-distribution","display_name":"Poisson distribution","score":0.3338380455970764},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32666611671447754},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3186835050582886},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.24670326709747314},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18721511960029602},{"id":"https://openalex.org/keywords/eigenvalues-and-eigenvectors","display_name":"Eigenvalues and eigenvectors","score":0.17600107192993164},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.1432809829711914}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6219477653503418},{"id":"https://openalex.org/C27438332","wikidata":"https://www.wikidata.org/wiki/Q2873","display_name":"Principal component analysis","level":2,"score":0.5725318789482117},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5679022073745728},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.5590476989746094},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5477197170257568},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.5216348767280579},{"id":"https://openalex.org/C152671427","wikidata":"https://www.wikidata.org/wiki/Q10843505","display_name":"Non-negative matrix factorization","level":4,"score":0.5149227380752563},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.47611480951309204},{"id":"https://openalex.org/C114289077","wikidata":"https://www.wikidata.org/wiki/Q3284399","display_name":"Statistical model","level":2,"score":0.45576438307762146},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.43067270517349243},{"id":"https://openalex.org/C33643355","wikidata":"https://www.wikidata.org/wiki/Q5176731","display_name":"Count data","level":3,"score":0.4225204586982727},{"id":"https://openalex.org/C116409475","wikidata":"https://www.wikidata.org/wiki/Q1385056","display_name":"External Data Representation","level":2,"score":0.4120739996433258},{"id":"https://openalex.org/C42355184","wikidata":"https://www.wikidata.org/wiki/Q1361088","display_name":"Matrix decomposition","level":3,"score":0.40163716673851013},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.34417325258255005},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.33607590198516846},{"id":"https://openalex.org/C100906024","wikidata":"https://www.wikidata.org/wiki/Q205692","display_name":"Poisson distribution","level":2,"score":0.3338380455970764},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32666611671447754},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3186835050582886},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.24670326709747314},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18721511960029602},{"id":"https://openalex.org/C158693339","wikidata":"https://www.wikidata.org/wiki/Q190524","display_name":"Eigenvalues and eigenvectors","level":2,"score":0.17600107192993164},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.1432809829711914},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btz177","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz177","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30865271","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30865271","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:arXiv.org:1710.11028","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1710.11028","pdf_url":"https://arxiv.org/pdf/1710.11028","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:HAL:hal-01649275v3","is_oa":false,"landing_page_url":"https://hal.science/hal-01649275","pdf_url":null,"source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://academic.oup.com/bioinformatics/advance-article-abstract/doi/10.1093/bioinformatics/btz177/5378703","raw_type":"Journal articles"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1710.11028","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1710.11028","pdf_url":"https://arxiv.org/pdf/1710.11028","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[{"display_name":"Decent work and economic growth","id":"https://metadata.un.org/sdg/8","score":0.44999998807907104}],"awards":[{"id":"https://openalex.org/G4182220265","display_name":null,"funder_award_id":"ANR-14-CE23-0003","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6598639536","display_name":null,"funder_award_id":"ANR-11-BINF-0001","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G8777520260","display_name":null,"funder_award_id":"CE23-0003","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G947838172","display_name":null,"funder_award_id":"ANR-11-BINF-0001-06","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320338335","display_name":"H2020 European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":75,"referenced_works":["https://openalex.org/W36948224","https://openalex.org/W190008395","https://openalex.org/W755552860","https://openalex.org/W1570770495","https://openalex.org/W1602702667","https://openalex.org/W1644145788","https://openalex.org/W1666901150","https://openalex.org/W1813068103","https://openalex.org/W1814082361","https://openalex.org/W1902027874","https://openalex.org/W1963628156","https://openalex.org/W1967327758","https://openalex.org/W1982729887","https://openalex.org/W1984883254","https://openalex.org/W1999974018","https://openalex.org/W2000769684","https://openalex.org/W2004026774","https://openalex.org/W2010653277","https://openalex.org/W2011832962","https://openalex.org/W2019552331","https://openalex.org/W2023887100","https://openalex.org/W2031696998","https://openalex.org/W2033403400","https://openalex.org/W2033544591","https://openalex.org/W2052567778","https://openalex.org/W2064977507","https://openalex.org/W2069295116","https://openalex.org/W2096765209","https://openalex.org/W2098290597","https://openalex.org/W2109363337","https://openalex.org/W2120575676","https://openalex.org/W2135001774","https://openalex.org/W2149031002","https://openalex.org/W2152239989","https://openalex.org/W2152692691","https://openalex.org/W2155676512","https://openalex.org/W2166851633","https://openalex.org/W2187089797","https://openalex.org/W2198371822","https://openalex.org/W2216511711","https://openalex.org/W2225156818","https://openalex.org/W2294798173","https://openalex.org/W2341365829","https://openalex.org/W2400112622","https://openalex.org/W2511262512","https://openalex.org/W2523369352","https://openalex.org/W2523620612","https://openalex.org/W2555892463","https://openalex.org/W2606690922","https://openalex.org/W2611495776","https://openalex.org/W2755009444","https://openalex.org/W2783644856","https://openalex.org/W2792647356","https://openalex.org/W2885781875","https://openalex.org/W2901678663","https://openalex.org/W2949067670","https://openalex.org/W2952387497","https://openalex.org/W2999905431","https://openalex.org/W3088019604","https://openalex.org/W3101380508","https://openalex.org/W3105265400","https://openalex.org/W3141898517","https://openalex.org/W3142239405","https://openalex.org/W4232513052","https://openalex.org/W4239353198","https://openalex.org/W4244030505","https://openalex.org/W4251287806","https://openalex.org/W4285719527","https://openalex.org/W4294562888","https://openalex.org/W4399578546","https://openalex.org/W6633833189","https://openalex.org/W6674201379","https://openalex.org/W6684578138","https://openalex.org/W6712621525","https://openalex.org/W6736919813"],"related_works":["https://openalex.org/W2127243424","https://openalex.org/W4390394189","https://openalex.org/W2037504162","https://openalex.org/W2539013788","https://openalex.org/W2792706544","https://openalex.org/W1568451138","https://openalex.org/W2156699640","https://openalex.org/W2045265907","https://openalex.org/W2972997031","https://openalex.org/W2146544734"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}