{"id":"https://openalex.org/W2919223991","doi":"https://doi.org/10.1093/bioinformatics/btz148","title":"DECO: decompose heterogeneous population cohorts for patient stratification and discovery of sample biomarkers using omic data profiling","display_name":"DECO: decompose heterogeneous population cohorts for patient stratification and discovery of sample biomarkers using omic data profiling","publication_year":2019,"publication_date":"2019-02-27","ids":{"openalex":"https://openalex.org/W2919223991","doi":"https://doi.org/10.1093/bioinformatics/btz148","mag":"2919223991","pmid":"https://pubmed.ncbi.nlm.nih.gov/30824909"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz148","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz148","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1093/bioinformatics/btz148","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017237027","display_name":"Francisco Campos\u2010Laborie","orcid":"https://orcid.org/0000-0002-1213-0457"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I184999862","display_name":"Universidad de Salamanca","ror":"https://ror.org/02f40zc51","country_code":"ES","type":"education","lineage":["https://openalex.org/I184999862"]},{"id":"https://openalex.org/I4210134045","display_name":"Instituto de Investigaci\u00f3n Biom\u00e9dica de Salamanca","ror":"https://ror.org/03em6xj44","country_code":"ES","type":"facility","lineage":["https://openalex.org/I184999862","https://openalex.org/I184999862","https://openalex.org/I4210099034","https://openalex.org/I4210134045"]},{"id":"https://openalex.org/I4210138819","display_name":"Centro de Investigaci\u00f3n del C\u00e1ncer","ror":"https://ror.org/04rxrdv16","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I184999862","https://openalex.org/I4210138819"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"F J Campos-Laborie","raw_affiliation_strings":["Bioinformatics and Functional Genomics Group, Cancer Research Center (CiC-IMBCC, CSIC/USAL/IBSAL), Consejo Superior de Investigaciones Cient\u00edficas (CSIC), University of Salamanca (USAL), Campus Miguel de Unamuno s/n , Salamanca, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Functional Genomics Group, Cancer Research Center (CiC-IMBCC, CSIC/USAL/IBSAL), Consejo Superior de Investigaciones Cient\u00edficas (CSIC), University of Salamanca (USAL), Campus Miguel de Unamuno s/n , Salamanca, Spain","institution_ids":["https://openalex.org/I134820265","https://openalex.org/I184999862","https://openalex.org/I4210134045","https://openalex.org/I4210138819"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076534799","display_name":"Alberto Risue\u00f1o","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"A Risue\u00f1o","raw_affiliation_strings":["Celgene Institute for Translational Research Europe (CITRE), Parque Cient\u00edfico y Tecnol\u00f3gico Cartuja 93 , Sevilla, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Celgene Institute for Translational Research Europe (CITRE), Parque Cient\u00edfico y Tecnol\u00f3gico Cartuja 93 , Sevilla, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052445989","display_name":"Mar\u00eda Ortiz-Est\u00e9vez","orcid":"https://orcid.org/0000-0002-4954-0994"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M Ortiz-Est\u00e9vez","raw_affiliation_strings":["Celgene Institute for Translational Research Europe (CITRE), Parque Cient\u00edfico y Tecnol\u00f3gico Cartuja 93 , Sevilla, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Celgene Institute for Translational Research Europe (CITRE), Parque Cient\u00edfico y Tecnol\u00f3gico Cartuja 93 , Sevilla, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027749178","display_name":"Beatriz Ros\u00f3n","orcid":"https://orcid.org/0000-0002-9851-2025"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I184999862","display_name":"Universidad de Salamanca","ror":"https://ror.org/02f40zc51","country_code":"ES","type":"education","lineage":["https://openalex.org/I184999862"]},{"id":"https://openalex.org/I4210134045","display_name":"Instituto de Investigaci\u00f3n Biom\u00e9dica de Salamanca","ror":"https://ror.org/03em6xj44","country_code":"ES","type":"facility","lineage":["https://openalex.org/I184999862","https://openalex.org/I184999862","https://openalex.org/I4210099034","https://openalex.org/I4210134045"]},{"id":"https://openalex.org/I4210138819","display_name":"Centro de Investigaci\u00f3n del C\u00e1ncer","ror":"https://ror.org/04rxrdv16","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I184999862","https://openalex.org/I4210138819"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"B Ros\u00f3n-Burgo","raw_affiliation_strings":["Bioinformatics and Functional Genomics Group, Cancer Research Center (CiC-IMBCC, CSIC/USAL/IBSAL), Consejo Superior de Investigaciones Cient\u00edficas (CSIC), University of Salamanca (USAL), Campus Miguel de Unamuno s/n , Salamanca, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Functional Genomics Group, Cancer Research Center (CiC-IMBCC, CSIC/USAL/IBSAL), Consejo Superior de Investigaciones Cient\u00edficas (CSIC), University of Salamanca (USAL), Campus Miguel de Unamuno s/n , Salamanca, Spain","institution_ids":["https://openalex.org/I134820265","https://openalex.org/I184999862","https://openalex.org/I4210134045","https://openalex.org/I4210138819"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005810798","display_name":"C. Droste","orcid":"https://orcid.org/0000-0001-6027-5805"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I184999862","display_name":"Universidad de Salamanca","ror":"https://ror.org/02f40zc51","country_code":"ES","type":"education","lineage":["https://openalex.org/I184999862"]},{"id":"https://openalex.org/I4210134045","display_name":"Instituto de Investigaci\u00f3n Biom\u00e9dica de Salamanca","ror":"https://ror.org/03em6xj44","country_code":"ES","type":"facility","lineage":["https://openalex.org/I184999862","https://openalex.org/I184999862","https://openalex.org/I4210099034","https://openalex.org/I4210134045"]},{"id":"https://openalex.org/I4210138819","display_name":"Centro de Investigaci\u00f3n del C\u00e1ncer","ror":"https://ror.org/04rxrdv16","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I184999862","https://openalex.org/I4210138819"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"C Droste","raw_affiliation_strings":["Bioinformatics and Functional Genomics Group, Cancer Research Center (CiC-IMBCC, CSIC/USAL/IBSAL), Consejo Superior de Investigaciones Cient\u00edficas (CSIC), University of Salamanca (USAL), Campus Miguel de Unamuno s/n , Salamanca, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Functional Genomics Group, Cancer Research Center (CiC-IMBCC, CSIC/USAL/IBSAL), Consejo Superior de Investigaciones Cient\u00edficas (CSIC), University of Salamanca (USAL), Campus Miguel de Unamuno s/n , Salamanca, Spain","institution_ids":["https://openalex.org/I134820265","https://openalex.org/I184999862","https://openalex.org/I4210134045","https://openalex.org/I4210138819"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069870180","display_name":"Celia Fontanillo","orcid":"https://orcid.org/0000-0002-3631-7881"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"C Fontanillo","raw_affiliation_strings":["Celgene Institute for Translational Research Europe (CITRE), Parque Cient\u00edfico y Tecnol\u00f3gico Cartuja 93 , Sevilla, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Celgene Institute for Translational Research Europe (CITRE), Parque Cient\u00edfico y Tecnol\u00f3gico Cartuja 93 , Sevilla, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016233543","display_name":"Ruth J. F. Loos","orcid":"https://orcid.org/0000-0002-8532-5087"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"R Loos","raw_affiliation_strings":["Celgene Institute for Translational Research Europe (CITRE), Parque Cient\u00edfico y Tecnol\u00f3gico Cartuja 93 , Sevilla, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Celgene Institute for Translational Research Europe (CITRE), Parque Cient\u00edfico y Tecnol\u00f3gico Cartuja 93 , Sevilla, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002761586","display_name":"Jos\u00e9 Manuel S\u00e1nchez-Santos","orcid":"https://orcid.org/0000-0002-7434-7598"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I184999862","display_name":"Universidad de Salamanca","ror":"https://ror.org/02f40zc51","country_code":"ES","type":"education","lineage":["https://openalex.org/I184999862"]},{"id":"https://openalex.org/I4210134045","display_name":"Instituto de Investigaci\u00f3n Biom\u00e9dica de Salamanca","ror":"https://ror.org/03em6xj44","country_code":"ES","type":"facility","lineage":["https://openalex.org/I184999862","https://openalex.org/I184999862","https://openalex.org/I4210099034","https://openalex.org/I4210134045"]},{"id":"https://openalex.org/I4210138819","display_name":"Centro de Investigaci\u00f3n del C\u00e1ncer","ror":"https://ror.org/04rxrdv16","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I184999862","https://openalex.org/I4210138819"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"J M S\u00e1nchez-Santos","raw_affiliation_strings":["Bioinformatics and Functional Genomics Group, Cancer Research Center (CiC-IMBCC, CSIC/USAL/IBSAL), Consejo Superior de Investigaciones Cient\u00edficas (CSIC), University of Salamanca (USAL), Campus Miguel de Unamuno s/n , Salamanca, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Functional Genomics Group, Cancer Research Center (CiC-IMBCC, CSIC/USAL/IBSAL), Consejo Superior de Investigaciones Cient\u00edficas (CSIC), University of Salamanca (USAL), Campus Miguel de Unamuno s/n , Salamanca, Spain","institution_ids":["https://openalex.org/I134820265","https://openalex.org/I184999862","https://openalex.org/I4210134045","https://openalex.org/I4210138819"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081730157","display_name":"Matthew Trotter","orcid":"https://orcid.org/0000-0003-3702-915X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M W Trotter","raw_affiliation_strings":["Celgene Institute for Translational Research Europe (CITRE), Parque Cient\u00edfico y Tecnol\u00f3gico Cartuja 93 , Sevilla, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Celgene Institute for Translational Research Europe (CITRE), Parque Cient\u00edfico y Tecnol\u00f3gico Cartuja 93 , Sevilla, Spain","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090598948","display_name":"Javier De Las Rivas","orcid":"https://orcid.org/0000-0002-0984-9946"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I184999862","display_name":"Universidad de Salamanca","ror":"https://ror.org/02f40zc51","country_code":"ES","type":"education","lineage":["https://openalex.org/I184999862"]},{"id":"https://openalex.org/I4210134045","display_name":"Instituto de Investigaci\u00f3n Biom\u00e9dica de Salamanca","ror":"https://ror.org/03em6xj44","country_code":"ES","type":"facility","lineage":["https://openalex.org/I184999862","https://openalex.org/I184999862","https://openalex.org/I4210099034","https://openalex.org/I4210134045"]},{"id":"https://openalex.org/I4210138819","display_name":"Centro de Investigaci\u00f3n del C\u00e1ncer","ror":"https://ror.org/04rxrdv16","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I184999862","https://openalex.org/I4210138819"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"J De Las Rivas","raw_affiliation_strings":["Bioinformatics and Functional Genomics Group, Cancer Research Center (CiC-IMBCC, CSIC/USAL/IBSAL), Consejo Superior de Investigaciones Cient\u00edficas (CSIC), University of Salamanca (USAL), Campus Miguel de Unamuno s/n , Salamanca, Spain"],"raw_orcid":"https://orcid.org/0000-0002-0984-9946","affiliations":[{"raw_affiliation_string":"Bioinformatics and Functional Genomics Group, Cancer Research Center (CiC-IMBCC, CSIC/USAL/IBSAL), Consejo Superior de Investigaciones Cient\u00edficas (CSIC), University of Salamanca (USAL), Campus Miguel de Unamuno s/n , Salamanca, Spain","institution_ids":["https://openalex.org/I134820265","https://openalex.org/I184999862","https://openalex.org/I4210134045","https://openalex.org/I4210138819"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5002761586","https://openalex.org/A5090598948"],"corresponding_institution_ids":["https://openalex.org/I134820265","https://openalex.org/I184999862","https://openalex.org/I4210134045","https://openalex.org/I4210138819"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.483,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.68615468,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"35","issue":"19","first_page":"3651","last_page":"3662"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.4115999937057495,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.4115999937057495,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.10660000145435333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.10440000146627426,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.8113707304000854},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.6003414392471313},{"id":"https://openalex.org/keywords/statistic","display_name":"Statistic","score":0.5574573874473572},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5146230459213257},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4476704001426697},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.43347927927970886},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4014361798763275},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3588808476924896},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25288137793540955},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.19875884056091309},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.13198110461235046},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07562065124511719}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.8113707304000854},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.6003414392471313},{"id":"https://openalex.org/C89128539","wikidata":"https://www.wikidata.org/wiki/Q1949963","display_name":"Statistic","level":2,"score":0.5574573874473572},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5146230459213257},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4476704001426697},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.43347927927970886},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4014361798763275},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3588808476924896},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25288137793540955},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.19875884056091309},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.13198110461235046},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07562065124511719},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btz148","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz148","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30824909","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30824909","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:digital.csic.es:10261/203050","is_oa":false,"landing_page_url":"http://hdl.handle.net/10261/203050","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"art\u00edculo"},{"id":"pmh:oai:europepmc.org:5733269","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6761977","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz148","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz148","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7879118109","display_name":null,"funder_award_id":"AC14/00024","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"}],"funders":[{"id":"https://openalex.org/F4320321595","display_name":"Federaci\u00f3n Espa\u00f1ola de Enfermedades Raras","ror":"https://ror.org/0348bpk17"},{"id":"https://openalex.org/F4320334923","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":80,"referenced_works":["https://openalex.org/W325781386","https://openalex.org/W342462317","https://openalex.org/W1533179050","https://openalex.org/W1830980872","https://openalex.org/W1837170756","https://openalex.org/W1908864745","https://openalex.org/W1977313396","https://openalex.org/W1977556410","https://openalex.org/W1986397115","https://openalex.org/W1987370132","https://openalex.org/W2001461029","https://openalex.org/W2006682339","https://openalex.org/W2015251162","https://openalex.org/W2022453703","https://openalex.org/W2023746329","https://openalex.org/W2035189255","https://openalex.org/W2044702943","https://openalex.org/W2048284906","https://openalex.org/W2050858670","https://openalex.org/W2071298010","https://openalex.org/W2072585972","https://openalex.org/W2073637065","https://openalex.org/W2075070585","https://openalex.org/W2075909160","https://openalex.org/W2081098333","https://openalex.org/W2081436697","https://openalex.org/W2082426444","https://openalex.org/W2094577167","https://openalex.org/W2096283457","https://openalex.org/W2105250913","https://openalex.org/W2105898083","https://openalex.org/W2110065044","https://openalex.org/W2111799408","https://openalex.org/W2112071941","https://openalex.org/W2118069309","https://openalex.org/W2118190787","https://openalex.org/W2119045098","https://openalex.org/W2121158863","https://openalex.org/W2126242846","https://openalex.org/W2132619562","https://openalex.org/W2135362692","https://openalex.org/W2137028370","https://openalex.org/W2137526110","https://openalex.org/W2142805011","https://openalex.org/W2143656700","https://openalex.org/W2146152969","https://openalex.org/W2148130433","https://openalex.org/W2151186330","https://openalex.org/W2157795344","https://openalex.org/W2158017189","https://openalex.org/W2158501247","https://openalex.org/W2162358630","https://openalex.org/W2163329495","https://openalex.org/W2170989872","https://openalex.org/W2397800570","https://openalex.org/W2434564083","https://openalex.org/W2465328916","https://openalex.org/W2486055736","https://openalex.org/W2513408092","https://openalex.org/W2560367415","https://openalex.org/W2564863163","https://openalex.org/W2580173867","https://openalex.org/W2588757737","https://openalex.org/W2590895140","https://openalex.org/W2601598528","https://openalex.org/W2605758741","https://openalex.org/W2725163236","https://openalex.org/W2753816075","https://openalex.org/W2794163630","https://openalex.org/W2794968531","https://openalex.org/W2795952221","https://openalex.org/W2952567211","https://openalex.org/W4205470728","https://openalex.org/W4241766192","https://openalex.org/W4247620172","https://openalex.org/W4255281351","https://openalex.org/W4294107304","https://openalex.org/W6644682428","https://openalex.org/W6683561533","https://openalex.org/W6684539355"],"related_works":["https://openalex.org/W2135678793","https://openalex.org/W2011682793","https://openalex.org/W2109288169","https://openalex.org/W2157684052","https://openalex.org/W2978247079","https://openalex.org/W2140163842","https://openalex.org/W2148708580","https://openalex.org/W2166887457","https://openalex.org/W2982252354","https://openalex.org/W2154126264"],"abstract_inverted_index":{"MOTIVATION:":[0],"Patient":[1],"and":[2,65,98,108,133,164,169,182,193],"sample":[3,152],"diversity":[4],"is":[5,87,159,201],"one":[6],"of":[7,37,73,111,149,185],"the":[8,147,180],"main":[9],"challenges":[10],"when":[11],"dealing":[12],"with":[13,122],"clinical":[14],"cohorts":[15],"in":[16,47,140],"biomedical":[17],"genomics":[18],"studies.":[19],"During":[20],"last":[21],"decade,":[22],"several":[23],"methods":[24,41],"have":[25],"been":[26],"developed":[27],"to":[28,32,44,63,90,171],"identify":[29],"biomarkers":[30,110],"assigned":[31],"specific":[33,112],"individuals":[34],"or":[35,52,75],"subtypes":[36],"samples.":[38],"However,":[39],"current":[40],"still":[42],"fail":[43],"discover":[45],"markers":[46],"complex":[48,155],"scenarios":[49],"where":[50],"heterogeneity":[51],"hidden":[53],"phenotypical":[54],"factors":[55],"are":[56,220],"present.":[57],"Here,":[58],"we":[59],"propose":[60],"a":[61,88,117,123,141,209],"method":[62,89,106],"analyze":[64],"understand":[66],"heterogeneous":[67,80],"data":[68,84,131,163,219],"avoiding":[69],"classical":[70],"normalization":[71],"approaches":[72],"reducing":[74],"removing":[76],"variation.":[77],"RESULTS:":[78],"DEcomposing":[79],"Cohorts":[81],"using":[82,161],"Omic":[83],"profiling":[85],"(DECO)":[86],"find":[91],"significant":[92],"association":[93],"among":[94],"biological":[95],"features":[96],"(biomarkers)":[97],"samples":[99],"(individuals)":[100],"analyzing":[101],"large-scale":[102],"omic":[103,130],"data.":[104],"The":[105,157],"identifies":[107],"categorizes":[109],"phenotypic":[113],"conditions":[114],"based":[115],"on":[116],"recurrent":[118],"differential":[119],"analysis":[120,139],"integrated":[121],"non-symmetrical":[124,137],"correspondence":[125,138],"analysis.":[126],"DECO":[127,177,200],"integrates":[128],"both":[129],"dispersion":[132],"predictor-response":[134],"relationship":[135],"from":[136],"unique":[142],"statistic":[143],"(called":[144],"h-statistic),":[145],"allowing":[146],"identification":[148,184],"closely":[150],"related":[151],"categories":[153],"within":[154],"cohorts.":[156],"performance":[158],"demonstrated":[160],"simulated":[162],"five":[165],"experimental":[166],"transcriptomic":[167],"datasets,":[168],"comparing":[170],"seven":[172],"other":[173],"methods.":[174],"We":[175],"show":[176],"greatly":[178],"enhances":[179],"discovery":[181],"subtle":[183],"biomarkers,":[186],"making":[187],"it":[188],"especially":[189],"suited":[190],"for":[191],"deep":[192],"accurate":[194],"patient":[195],"stratification.":[196],"AVAILABILITY":[197],"AND":[198],"IMPLEMENTATION:":[199],"freely":[202],"available":[203,221],"as":[204],"an":[205],"R":[206],"package":[207],"(including":[208],"practical":[210],"vignette)":[211],"at":[212,222],"Bioconductor":[213],"repository":[214],"(http://bioconductor.org/packages/deco/).":[215],"SUPPLEMENTARY":[216],"INFORMATION:":[217],"Supplementary":[218],"Bioinformatics":[223],"online.":[224]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
