{"id":"https://openalex.org/W2920882081","doi":"https://doi.org/10.1093/bioinformatics/btz142","title":"MeSHProbeNet: a self-attentive probe net for MeSH indexing","display_name":"MeSHProbeNet: a self-attentive probe net for MeSH indexing","publication_year":2019,"publication_date":"2019-03-07","ids":{"openalex":"https://openalex.org/W2920882081","doi":"https://doi.org/10.1093/bioinformatics/btz142","mag":"2920882081","pmid":"https://pubmed.ncbi.nlm.nih.gov/30851089"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz142","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz142","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048238468","display_name":"Guangxu Xun","orcid":"https://orcid.org/0000-0002-7657-4305"},"institutions":[{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Guangxu Xun","raw_affiliation_strings":["Department of Computer Science, University of Virginia , Charlottesville, VA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Virginia , Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021740848","display_name":"Kishlay Jha","orcid":"https://orcid.org/0000-0003-0826-445X"},"institutions":[{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kishlay Jha","raw_affiliation_strings":["Department of Computer Science, University of Virginia , Charlottesville, VA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Virginia , Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082583182","display_name":"Ye Yuan","orcid":"https://orcid.org/0000-0002-4270-8002"},"institutions":[{"id":"https://openalex.org/I37796252","display_name":"Beijing University of Technology","ror":"https://ror.org/037b1pp87","country_code":"CN","type":"education","lineage":["https://openalex.org/I37796252"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ye Yuan","raw_affiliation_strings":["Department of Information and Communication Engineering, Beijing University of Technology , Beijing, China"],"affiliations":[{"raw_affiliation_string":"Department of Information and Communication Engineering, Beijing University of Technology , Beijing, China","institution_ids":["https://openalex.org/I37796252"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101752147","display_name":"Yaqing Wang","orcid":"https://orcid.org/0000-0002-5797-3992"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yaqing Wang","raw_affiliation_strings":["Department of Computer Science and Engineering, SUNY at Buffalo , Buffalo, NY, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, SUNY at Buffalo , Buffalo, NY, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013588572","display_name":"Aidong Zhang","orcid":"https://orcid.org/0000-0001-9723-3246"},"institutions":[{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aidong Zhang","raw_affiliation_strings":["Department of Computer Science, University of Virginia , Charlottesville, VA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Virginia , Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5048238468"],"corresponding_institution_ids":["https://openalex.org/I51556381"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.6423,"has_fulltext":false,"cited_by_count":46,"citation_normalized_percentile":{"value":0.907291,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"35","issue":"19","first_page":"3794","last_page":"3802"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11550","display_name":"Text and Document Classification Technologies","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.7148460149765015},{"id":"https://openalex.org/keywords/net","display_name":"Net (polyhedron)","score":0.6926651000976562},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6655839681625366},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4524593949317932},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4031592607498169},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.34256511926651},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2054186761379242},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1874828338623047},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.08806800842285156}],"concepts":[{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.7148460149765015},{"id":"https://openalex.org/C14166107","wikidata":"https://www.wikidata.org/wiki/Q253829","display_name":"Net (polyhedron)","level":2,"score":0.6926651000976562},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6655839681625366},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4524593949317932},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4031592607498169},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.34256511926651},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2054186761379242},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1874828338623047},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.08806800842285156}],"mesh":[{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009317","descriptor_name":"National Library of Medicine (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009317","descriptor_name":"National Library of Medicine (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009317","descriptor_name":"National Library of Medicine (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz142","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz142","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30851089","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30851089","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G828023077","display_name":null,"funder_award_id":"IIS-1514204","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320309480","display_name":"Nvidia","ror":"https://ror.org/03jdj4y14"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W100623710","https://openalex.org/W1981208470","https://openalex.org/W2061172803","https://openalex.org/W2064675550","https://openalex.org/W2096525273","https://openalex.org/W2115610681","https://openalex.org/W2122402213","https://openalex.org/W2142955026","https://openalex.org/W2428528690","https://openalex.org/W2488756391","https://openalex.org/W2780526826","https://openalex.org/W2919115771","https://openalex.org/W3122990092","https://openalex.org/W4251386234","https://openalex.org/W6678480499"],"related_works":["https://openalex.org/W3024364549","https://openalex.org/W4206019083","https://openalex.org/W2048865712","https://openalex.org/W1976265003","https://openalex.org/W2370378377","https://openalex.org/W2130160813","https://openalex.org/W2054476758","https://openalex.org/W2350613701","https://openalex.org/W2000569830","https://openalex.org/W4237510188"],"abstract_inverted_index":{"MeSHProbeNet":[0,42,71],"won":[1],"the":[2,6,13,20,25,44,49],"first":[3],"place":[4],"in":[5,12,29,47],"latest":[7],"batch":[8],"of":[9,24],"Task":[10],"A":[11],"2018":[14],"BioASQ":[15],"challenge.":[16],"The":[17],"result":[18],"on":[19],"last":[21],"test":[22],"set":[23],"challenge":[26],"is":[27,72],"reported":[28],"this":[30],"paper.":[31],"Compared":[32],"with":[33],"other":[34],"state-of-the-art":[35],"models,":[36],"such":[37],"as":[38],"MTI":[39],"and":[40,61],"DeepMeSH,":[41],"achieves":[43],"highest":[45],"scores":[46],"all":[48],"F-measures,":[50],"including":[51],"Example":[52],"Based":[53],"F-Measure,":[54,56,58],"Macro":[55],"Micro":[57],"Hierarchical":[59],"F-Measure":[60],"Lowest":[62],"Common":[63],"Ancestor":[64],"F-measure.":[65],"We":[66],"also":[67],"intuitively":[68],"show":[69],"how":[70],"able":[73],"to":[74],"extract":[75],"comprehensive":[76],"biomedical":[77],"knowledge":[78],"from":[79],"an":[80],"input":[81],"article.":[82]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
