{"id":"https://openalex.org/W2915769286","doi":"https://doi.org/10.1093/bioinformatics/btz140","title":"SPIM workflow manager for HPC","display_name":"SPIM workflow manager for HPC","publication_year":2019,"publication_date":"2019-02-22","ids":{"openalex":"https://openalex.org/W2915769286","doi":"https://doi.org/10.1093/bioinformatics/btz140","mag":"2915769286","pmid":"https://pubmed.ncbi.nlm.nih.gov/30799494"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz140","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz140","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/19/3875/30061647/btz140.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/19/3875/30061647/btz140.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048116214","display_name":"Jan Kozuszn\u00edk","orcid":"https://orcid.org/0000-0003-2319-5843"},"institutions":[{"id":"https://openalex.org/I142208455","display_name":"VSB - Technical University of Ostrava","ror":"https://ror.org/05x8mcb75","country_code":"CZ","type":"education","lineage":["https://openalex.org/I142208455"]}],"countries":["CZ"],"is_corresponding":true,"raw_author_name":"Jan Ko\u017eusznik","raw_affiliation_strings":["Department of Computer Science, FEECS VSB\u2013Technical University of Ostrava , Ostrava, Czech Republic","IT4Innovations, VSB\u2013Technical University of Ostrava , Ostrava, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, FEECS VSB\u2013Technical University of Ostrava , Ostrava, Czech Republic","institution_ids":["https://openalex.org/I142208455"]},{"raw_affiliation_string":"IT4Innovations, VSB\u2013Technical University of Ostrava , Ostrava, Czech Republic","institution_ids":["https://openalex.org/I142208455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042084656","display_name":"Petr Bainar","orcid":"https://orcid.org/0000-0003-3860-1218"},"institutions":[{"id":"https://openalex.org/I142208455","display_name":"VSB - Technical University of Ostrava","ror":"https://ror.org/05x8mcb75","country_code":"CZ","type":"education","lineage":["https://openalex.org/I142208455"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Petr Bainar","raw_affiliation_strings":["IT4Innovations, VSB\u2013Technical University of Ostrava , Ostrava, Czech Republic"],"affiliations":[{"raw_affiliation_string":"IT4Innovations, VSB\u2013Technical University of Ostrava , Ostrava, Czech Republic","institution_ids":["https://openalex.org/I142208455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074679664","display_name":"Jana Kl\u00edmov\u00e1","orcid":"https://orcid.org/0000-0002-0623-8285"},"institutions":[{"id":"https://openalex.org/I142208455","display_name":"VSB - Technical University of Ostrava","ror":"https://ror.org/05x8mcb75","country_code":"CZ","type":"education","lineage":["https://openalex.org/I142208455"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Jana Kl\u00edmov\u00e1","raw_affiliation_strings":["IT4Innovations, VSB\u2013Technical University of Ostrava , Ostrava, Czech Republic"],"affiliations":[{"raw_affiliation_string":"IT4Innovations, VSB\u2013Technical University of Ostrava , Ostrava, Czech Republic","institution_ids":["https://openalex.org/I142208455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059983208","display_name":"Michal Krumnikl","orcid":"https://orcid.org/0000-0002-6153-4212"},"institutions":[{"id":"https://openalex.org/I142208455","display_name":"VSB - Technical University of Ostrava","ror":"https://ror.org/05x8mcb75","country_code":"CZ","type":"education","lineage":["https://openalex.org/I142208455"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Michal Krumnikl","raw_affiliation_strings":["Department of Computer Science, FEECS VSB\u2013Technical University of Ostrava , Ostrava, Czech Republic","IT4Innovations, VSB\u2013Technical University of Ostrava , Ostrava, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, FEECS VSB\u2013Technical University of Ostrava , Ostrava, Czech Republic","institution_ids":["https://openalex.org/I142208455"]},{"raw_affiliation_string":"IT4Innovations, VSB\u2013Technical University of Ostrava , Ostrava, Czech Republic","institution_ids":["https://openalex.org/I142208455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048554340","display_name":"Pavel Moravec","orcid":"https://orcid.org/0000-0001-8443-1593"},"institutions":[{"id":"https://openalex.org/I142208455","display_name":"VSB - Technical University of Ostrava","ror":"https://ror.org/05x8mcb75","country_code":"CZ","type":"education","lineage":["https://openalex.org/I142208455"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Pavel Moravec","raw_affiliation_strings":["Department of Computer Science, FEECS VSB\u2013Technical University of Ostrava , Ostrava, Czech Republic","IT4Innovations, VSB\u2013Technical University of Ostrava , Ostrava, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, FEECS VSB\u2013Technical University of Ostrava , Ostrava, Czech Republic","institution_ids":["https://openalex.org/I142208455"]},{"raw_affiliation_string":"IT4Innovations, VSB\u2013Technical University of Ostrava , Ostrava, Czech Republic","institution_ids":["https://openalex.org/I142208455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006581883","display_name":"V\u00e1clav Svato\u0148","orcid":"https://orcid.org/0000-0001-8187-8218"},"institutions":[{"id":"https://openalex.org/I142208455","display_name":"VSB - Technical University of Ostrava","ror":"https://ror.org/05x8mcb75","country_code":"CZ","type":"education","lineage":["https://openalex.org/I142208455"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"V\u00e1clav Svato\u0148","raw_affiliation_strings":["IT4Innovations, VSB\u2013Technical University of Ostrava , Ostrava, Czech Republic"],"affiliations":[{"raw_affiliation_string":"IT4Innovations, VSB\u2013Technical University of Ostrava , Ostrava, Czech Republic","institution_ids":["https://openalex.org/I142208455"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042671050","display_name":"Pavel Toman\u010d\u00e1k","orcid":"https://orcid.org/0000-0002-2222-9370"},"institutions":[{"id":"https://openalex.org/I4210159854","display_name":"Max Planck Institute of Molecular Cell Biology and Genetics","ror":"https://ror.org/05b8d3w18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210159854"]},{"id":"https://openalex.org/I142208455","display_name":"VSB - Technical University of Ostrava","ror":"https://ror.org/05x8mcb75","country_code":"CZ","type":"education","lineage":["https://openalex.org/I142208455"]}],"countries":["CZ","DE"],"is_corresponding":true,"raw_author_name":"Pavel Toman\u010d\u00e1k","raw_affiliation_strings":["IT4Innovations, VSB\u2013Technical University of Ostrava , Ostrava, Czech Republic","Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany"],"affiliations":[{"raw_affiliation_string":"IT4Innovations, VSB\u2013Technical University of Ostrava , Ostrava, Czech Republic","institution_ids":["https://openalex.org/I142208455"]},{"raw_affiliation_string":"Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany","institution_ids":["https://openalex.org/I4210159854"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5042671050","https://openalex.org/A5048116214"],"corresponding_institution_ids":["https://openalex.org/I142208455","https://openalex.org/I4210159854"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":1715,"currency":"EUR","value_usd":1849},"fwci":0.4409,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.8005032,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"35","issue":"19","first_page":"3875","last_page":"3876"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7774246335029602},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6742922067642212},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.47380393743515015},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3339551091194153},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.32520592212677},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.32514816522598267},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.28422218561172485}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7774246335029602},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6742922067642212},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.47380393743515015},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3339551091194153},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.32520592212677},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.32514816522598267},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.28422218561172485}],"mesh":[{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btz140","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz140","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/19/3875/30061647/btz140.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30799494","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30799494","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:dspace.vsb.cz:10084/139055","is_oa":true,"landing_page_url":"http://hdl.handle.net/10084/139055","pdf_url":null,"source":{"id":"https://openalex.org/S4306401668","display_name":"DSpace V\u0160B-TUO (V\u0160B-TUO)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I142208455","host_organization_name":"VSB - Technical University of Ostrava","host_organization_lineage":["https://openalex.org/I142208455"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Peer-reviewed"},{"id":"pmh:oai:europepmc.org:5733250","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6761944","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pure.mpg.de:item_3236098","is_oa":false,"landing_page_url":"http://hdl.handle.net/21.11116/0000-0006-7E3A-D","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz140","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz140","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/19/3875/30061647/btz140.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.41999998688697815,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320337144","display_name":"National Supercomputing Center, Korea Institute of Science and Technology Information","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2915769286.pdf","grobid_xml":"https://content.openalex.org/works/W2915769286.grobid-xml"},"referenced_works_count":5,"referenced_works":["https://openalex.org/W1580913419","https://openalex.org/W1863538613","https://openalex.org/W2151299342","https://openalex.org/W2167279371","https://openalex.org/W2580035316"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W188202134","https://openalex.org/W2397952901","https://openalex.org/W2029380707","https://openalex.org/W4255934811","https://openalex.org/W2465382974"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2019,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
