{"id":"https://openalex.org/W2913894506","doi":"https://doi.org/10.1093/bioinformatics/btz105","title":"Network inference performance complexity: a consequence of topological, experimental and algorithmic determinants","display_name":"Network inference performance complexity: a consequence of topological, experimental and algorithmic determinants","publication_year":2019,"publication_date":"2019-02-14","ids":{"openalex":"https://openalex.org/W2913894506","doi":"https://doi.org/10.1093/bioinformatics/btz105","mag":"2913894506","pmid":"https://pubmed.ncbi.nlm.nih.gov/30932143"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz105","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz105","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/18/3421/48975238/bioinformatics_35_18_3421.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/18/3421/48975238/bioinformatics_35_18_3421.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015450293","display_name":"Joseph J. Muldoon","orcid":"https://orcid.org/0000-0003-3784-3565"},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joseph J Muldoon","raw_affiliation_strings":["Department of Chemical and Biological Engineering, Northwestern University , Evanston, IL, USA","Interdisciplinary Biological Sciences Program, Northwestern University , Evanston, IL, USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemical and Biological Engineering, Northwestern University , Evanston, IL, USA","institution_ids":["https://openalex.org/I111979921"]},{"raw_affiliation_string":"Interdisciplinary Biological Sciences Program, Northwestern University , Evanston, IL, USA","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066936754","display_name":"Jessica S. Yu","orcid":"https://orcid.org/0000-0003-4464-904X"},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jessica S Yu","raw_affiliation_strings":["Department of Chemical and Biological Engineering, Northwestern University , Evanston, IL, USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemical and Biological Engineering, Northwestern University , Evanston, IL, USA","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112415267","display_name":"Mohammad-Kasim Fassia","orcid":null},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mohammad-Kasim Fassia","raw_affiliation_strings":["Department of Biomedical Engineering, Northwestern University , Evanston, IL, USA","Department of Chemical and Biological Engineering, Northwestern University , Evanston, IL, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Northwestern University , Evanston, IL, USA","institution_ids":["https://openalex.org/I111979921"]},{"raw_affiliation_string":"Department of Chemical and Biological Engineering, Northwestern University , Evanston, IL, USA","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030550883","display_name":"Neda Bagheri","orcid":"https://orcid.org/0000-0003-0146-4627"},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Neda Bagheri","raw_affiliation_strings":["Center for Synthetic Biology, Northwestern University , Evanston, IL, USA","Chemistry of Life Processes Institute, Northwestern University , Evanston, IL, USA","Department of Chemical and Biological Engineering, Northwestern University , Evanston, IL, USA","Interdisciplinary Biological Sciences Program, Northwestern University , Evanston, IL, USA","Northwestern Institute on Complex Systems, Northwestern University , Evanston, IL, USA"],"affiliations":[{"raw_affiliation_string":"Center for Synthetic Biology, Northwestern University , Evanston, IL, USA","institution_ids":["https://openalex.org/I111979921"]},{"raw_affiliation_string":"Chemistry of Life Processes Institute, Northwestern University , Evanston, IL, USA","institution_ids":["https://openalex.org/I111979921"]},{"raw_affiliation_string":"Department of Chemical and Biological Engineering, Northwestern University , Evanston, IL, USA","institution_ids":["https://openalex.org/I111979921"]},{"raw_affiliation_string":"Interdisciplinary Biological Sciences Program, Northwestern University , Evanston, IL, USA","institution_ids":["https://openalex.org/I111979921"]},{"raw_affiliation_string":"Northwestern Institute on Complex Systems, Northwestern University , Evanston, IL, USA","institution_ids":["https://openalex.org/I111979921"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5030550883"],"corresponding_institution_ids":["https://openalex.org/I111979921"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.6871,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.68322502,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"35","issue":"18","first_page":"3421","last_page":"3432"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.802111804485321},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7388246059417725},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5518333911895752},{"id":"https://openalex.org/keywords/blueprint","display_name":"Blueprint","score":0.5285526514053345},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.4673768877983093},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.457755446434021},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.39324644207954407},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38768714666366577},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1211463212966919}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.802111804485321},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7388246059417725},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5518333911895752},{"id":"https://openalex.org/C155911762","wikidata":"https://www.wikidata.org/wiki/Q422321","display_name":"Blueprint","level":2,"score":0.5285526514053345},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.4673768877983093},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.457755446434021},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.39324644207954407},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38768714666366577},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1211463212966919},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz105","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz105","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/18/3421/48975238/bioinformatics_35_18_3421.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30932143","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30932143","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6748731","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6748731","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz105","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz105","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/18/3421/48975238/bioinformatics_35_18_3421.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/16","score":0.7900000214576721,"display_name":"Peace, Justice and strong institutions"}],"awards":[{"id":"https://openalex.org/G4640338107","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320309475","funder_display_name":"Northwestern University"},{"id":"https://openalex.org/G6266958601","display_name":null,"funder_award_id":"1653315","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6347694119","display_name":null,"funder_award_id":"CBET-1653315","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6671297155","display_name":null,"funder_award_id":"CAREER","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320309475","display_name":"Northwestern University","ror":"https://ror.org/000e0be47"},{"id":"https://openalex.org/F4320337390","display_name":"Division of Chemical, Bioengineering, Environmental, and Transport Systems","ror":"https://ror.org/0471zv972"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2913894506.pdf","grobid_xml":"https://content.openalex.org/works/W2913894506.grobid-xml"},"referenced_works_count":83,"referenced_works":["https://openalex.org/W1593308984","https://openalex.org/W1758945213","https://openalex.org/W1851422093","https://openalex.org/W1965032353","https://openalex.org/W1969410032","https://openalex.org/W1988391018","https://openalex.org/W1992045522","https://openalex.org/W1995031758","https://openalex.org/W1996264210","https://openalex.org/W2008743304","https://openalex.org/W2010653277","https://openalex.org/W2013324041","https://openalex.org/W2015382377","https://openalex.org/W2016631235","https://openalex.org/W2022891974","https://openalex.org/W2023348596","https://openalex.org/W2031318656","https://openalex.org/W2034662766","https://openalex.org/W2044525257","https://openalex.org/W2050559302","https://openalex.org/W2056875635","https://openalex.org/W2061280979","https://openalex.org/W2064237923","https://openalex.org/W2070822442","https://openalex.org/W2076372398","https://openalex.org/W2076382102","https://openalex.org/W2076513103","https://openalex.org/W2076604395","https://openalex.org/W2083819830","https://openalex.org/W2084018951","https://openalex.org/W2087234479","https://openalex.org/W2095802318","https://openalex.org/W2097498614","https://openalex.org/W2104517740","https://openalex.org/W2105129830","https://openalex.org/W2106555403","https://openalex.org/W2106927126","https://openalex.org/W2109110326","https://openalex.org/W2109384743","https://openalex.org/W2115108153","https://openalex.org/W2116944463","https://openalex.org/W2118328021","https://openalex.org/W2124019798","https://openalex.org/W2125258701","https://openalex.org/W2126345910","https://openalex.org/W2129265801","https://openalex.org/W2134423940","https://openalex.org/W2136040353","https://openalex.org/W2137474062","https://openalex.org/W2139997707","https://openalex.org/W2140497888","https://openalex.org/W2143877670","https://openalex.org/W2151554678","https://openalex.org/W2153011302","https://openalex.org/W2155408323","https://openalex.org/W2157581457","https://openalex.org/W2157593856","https://openalex.org/W2160803964","https://openalex.org/W2161511352","https://openalex.org/W2161922735","https://openalex.org/W2163296115","https://openalex.org/W2163304727","https://openalex.org/W2163430198","https://openalex.org/W2169053773","https://openalex.org/W2209382794","https://openalex.org/W2214279640","https://openalex.org/W2235108513","https://openalex.org/W2316330143","https://openalex.org/W2548958469","https://openalex.org/W2581030038","https://openalex.org/W2608543022","https://openalex.org/W2609826536","https://openalex.org/W2616922646","https://openalex.org/W2803928488","https://openalex.org/W2808743742","https://openalex.org/W2911964244","https://openalex.org/W3000063281","https://openalex.org/W3004732050","https://openalex.org/W3099289621","https://openalex.org/W3104281729","https://openalex.org/W6654183441","https://openalex.org/W6666075070","https://openalex.org/W6729725382"],"related_works":["https://openalex.org/W2384575798","https://openalex.org/W2265189214","https://openalex.org/W2766654718","https://openalex.org/W2007211730","https://openalex.org/W2379378785","https://openalex.org/W2560421304","https://openalex.org/W2950199998","https://openalex.org/W2951387065","https://openalex.org/W4385727351","https://openalex.org/W4306798985"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
