{"id":"https://openalex.org/W2953339515","doi":"https://doi.org/10.1093/bioinformatics/btz102","title":"Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs","display_name":"Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs","publication_year":2019,"publication_date":"2019-02-18","ids":{"openalex":"https://openalex.org/W2953339515","doi":"https://doi.org/10.1093/bioinformatics/btz102","mag":"2953339515","pmid":"https://pubmed.ncbi.nlm.nih.gov/30785192"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz102","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz102","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1374/32793826/btz102.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1374/32793826/btz102.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001793115","display_name":"Antoine Limasset","orcid":"https://orcid.org/0000-0002-0669-4141"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Antoine Limasset","raw_affiliation_strings":["Evolutionary Biology & Ecology, Universit\u00e9 Libre de Bruxelles (ULB) , Bruxelles, Belgium"],"raw_orcid":"https://orcid.org/0000-0002-0669-4141","affiliations":[{"raw_affiliation_string":"Evolutionary Biology & Ecology, Universit\u00e9 Libre de Bruxelles (ULB) , Bruxelles, Belgium","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090803386","display_name":"Jean\u2010Fran\u00e7ois Flot","orcid":"https://orcid.org/0000-0003-4091-7916"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Jean-Fran\u00e7ois Flot","raw_affiliation_strings":["Evolutionary Biology & Ecology, Universit\u00e9 Libre de Bruxelles (ULB) , Bruxelles, Belgium","Interuniversity Institute of Bioinformatics in Brussels \u2013 (IB) 2, Brussels, Belgium"],"raw_orcid":"https://orcid.org/0000-0003-4091-7916","affiliations":[{"raw_affiliation_string":"Evolutionary Biology & Ecology, Universit\u00e9 Libre de Bruxelles (ULB) , Bruxelles, Belgium","institution_ids":["https://openalex.org/I132053463"]},{"raw_affiliation_string":"Interuniversity Institute of Bioinformatics in Brussels \u2013 (IB) 2, Brussels, Belgium","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012897398","display_name":"Pierre Peterlongo","orcid":"https://orcid.org/0000-0003-0776-6407"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I56067802","display_name":"Universit\u00e9 de Rennes","ror":"https://ror.org/015m7wh34","country_code":"FR","type":"education","lineage":["https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Pierre Peterlongo","raw_affiliation_strings":["Inria, CNRS, University of Rennes , IRISA, Rennes, France"],"raw_orcid":"https://orcid.org/0000-0003-0776-6407","affiliations":[{"raw_affiliation_string":"Inria, CNRS, University of Rennes , IRISA, Rennes, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I2802519937","https://openalex.org/I56067802"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5001793115"],"corresponding_institution_ids":["https://openalex.org/I132053463"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.2771,"has_fulltext":true,"cited_by_count":44,"citation_normalized_percentile":{"value":0.89233046,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"36","issue":"5","first_page":"1374","last_page":"1381"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.001500000013038516,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.0006000000284984708,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/de-bruijn-sequence","display_name":"De Bruijn sequence","score":0.9301986694335938},{"id":"https://openalex.org/keywords/de-bruijn-graph","display_name":"De Bruijn graph","score":0.9058194160461426},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7746549844741821},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6436585187911987},{"id":"https://openalex.org/keywords/k-mer","display_name":"k-mer","score":0.6152011752128601},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5029303431510925},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.4979689121246338},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.48638299107551575},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.41383659839630127},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.37094080448150635},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.34586137533187866},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.33864226937294006},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17994871735572815},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.1325770616531372},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12463676929473877},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.12136849761009216},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10887137055397034},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09588506817817688},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08446121215820312}],"concepts":[{"id":"https://openalex.org/C170320093","wikidata":"https://www.wikidata.org/wiki/Q1953457","display_name":"De Bruijn sequence","level":2,"score":0.9301986694335938},{"id":"https://openalex.org/C20218877","wikidata":"https://www.wikidata.org/wiki/Q3066095","display_name":"De Bruijn graph","level":3,"score":0.9058194160461426},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7746549844741821},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6436585187911987},{"id":"https://openalex.org/C2279292","wikidata":"https://www.wikidata.org/wiki/Q6322851","display_name":"k-mer","level":4,"score":0.6152011752128601},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5029303431510925},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.4979689121246338},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.48638299107551575},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.41383659839630127},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.37094080448150635},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.34586137533187866},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.33864226937294006},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17994871735572815},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.1325770616531372},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12463676929473877},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.12136849761009216},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10887137055397034},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09588506817817688},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08446121215820312},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1093/bioinformatics/btz102","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz102","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1374/32793826/btz102.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30785192","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30785192","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmid:31808510","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31808510","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:arXiv.org:1711.03336","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1711.03336","pdf_url":"https://arxiv.org/pdf/1711.03336","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:HAL:hal-01644163v1","is_oa":false,"landing_page_url":"https://inria.hal.science/hal-01644163","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://recomb2018.fr/","raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"pmh:oai:HAL:hal-02407243v1","is_oa":false,"landing_page_url":"https://inria.hal.science/hal-02407243","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2019, &#x27E8;10.1093/bioinformatics/btz102&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:dipot.ulb.ac.be:2013/289161","is_oa":true,"landing_page_url":"http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/289161","pdf_url":null,"source":{"id":"https://openalex.org/S4306401063","display_name":"D\u00e9p\u00f4t institutionnel de l'Universit\u00e9 libre de Bruxelles (Universit\u00e9 Libre de Bruxelles)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I132053463","host_organization_name":"Universit\u00e9 Libre de Bruxelles","host_organization_lineage":["https://openalex.org/I132053463"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 36 (5","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:lilloa.univ-lille.fr:20.500.12210/22079","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.12210/22079","pdf_url":null,"source":{"id":"https://openalex.org/S4306402203","display_name":"LillOA (Universit\u00e9 de Lille (University Of Lille))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210123514","host_organization_name":"Centre d'Etudes en Civilisations, Langues et Litt\u00e9ratures Etrang\u00e8res","host_organization_lineage":["https://openalex.org/I4210123514"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz102","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz102","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1374/32793826/btz102.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1111125796","display_name":null,"funder_award_id":"Grant No. 2.5020.11","funder_id":"https://openalex.org/F4320321390","funder_display_name":"Fonds De La Recherche Scientifique - FNRS"},{"id":"https://openalex.org/G135998321","display_name":"Comparative Metagenomic for Measuring Biodiversity. Application to Ocean Life Studies","funder_award_id":"ANR-14-CE23-0001","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G1987423430","display_name":null,"funder_award_id":"No. 2.5020.11","funder_id":"https://openalex.org/F4320321390","funder_display_name":"Fonds De La Recherche Scientifique - FNRS"},{"id":"https://openalex.org/G353390944","display_name":null,"funder_award_id":"# 2.5020.11","funder_id":"https://openalex.org/F4320321390","funder_display_name":"Fonds De La Recherche Scientifique - FNRS"},{"id":"https://openalex.org/G6905955430","display_name":null,"funder_award_id":"2.5020.11","funder_id":"https://openalex.org/F4320321584","funder_display_name":"F\u00e9d\u00e9ration Wallonie-Bruxelles"},{"id":"https://openalex.org/G7664062879","display_name":null,"funder_award_id":"2.5020","funder_id":"https://openalex.org/F4320321390","funder_display_name":"Fonds De La Recherche Scientifique - FNRS"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320321390","display_name":"Fonds De La Recherche Scientifique - FNRS","ror":"https://ror.org/03q83t159"},{"id":"https://openalex.org/F4320321584","display_name":"F\u00e9d\u00e9ration Wallonie-Bruxelles","ror":"https://ror.org/04q01pf08"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2953339515.pdf","grobid_xml":"https://content.openalex.org/works/W2953339515.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W1519765314","https://openalex.org/W1813440684","https://openalex.org/W1879624628","https://openalex.org/W1966385714","https://openalex.org/W2001079689","https://openalex.org/W2014099509","https://openalex.org/W2073026107","https://openalex.org/W2078331392","https://openalex.org/W2094270919","https://openalex.org/W2101250487","https://openalex.org/W2103441770","https://openalex.org/W2104052851","https://openalex.org/W2104677379","https://openalex.org/W2105656684","https://openalex.org/W2105708056","https://openalex.org/W2107772251","https://openalex.org/W2124960286","https://openalex.org/W2136651963","https://openalex.org/W2141978199","https://openalex.org/W2152246890","https://openalex.org/W2160177274","https://openalex.org/W2160665949","https://openalex.org/W2168133698","https://openalex.org/W2170551349","https://openalex.org/W2295523269","https://openalex.org/W2340761128","https://openalex.org/W2438121987","https://openalex.org/W2498287879","https://openalex.org/W2550586733","https://openalex.org/W2570372911","https://openalex.org/W2767132092","https://openalex.org/W2952167528","https://openalex.org/W2952935047","https://openalex.org/W6734086220"],"related_works":["https://openalex.org/W2120956621","https://openalex.org/W2915362964","https://openalex.org/W3215786367","https://openalex.org/W3205360317","https://openalex.org/W4214573178","https://openalex.org/W2562683361","https://openalex.org/W3200242814","https://openalex.org/W4200364103","https://openalex.org/W4282946044","https://openalex.org/W2340761128"],"abstract_inverted_index":{"MOTIVATION:":[0],"Short-read":[1],"accuracy":[2],"is":[3,86,106,147],"important":[4],"for":[5],"downstream":[6],"analyses":[7],"such":[8],"as":[9,35,65,109,159],"genome":[10],"assembly":[11],"and":[12,62,140,158],"hybrid":[13],"long-read":[14],"correction.":[15],"Despite":[16],"much":[17],"work":[18],"on":[19,29,88,112],"short-read":[20],"correction,":[21],"present-day":[22],"correctors":[23,132],"either":[24],"do":[25],"not":[26],"scale":[27],"well":[28],"large":[30],"datasets":[31,139],"or":[32],"consider":[33],"reads":[34,57,115,129],"mere":[36],"suites":[37],"of":[38,91,95],"k-mers,":[39],"without":[40],"taking":[41],"into":[42],"account":[43],"their":[44],"full-length":[45],"sequence":[46],"information.":[47],"RESULTS:":[48],"We":[49,121],"propose":[50],"a":[51,66,71,76,110,160],"new":[52],"method":[53],"to":[54,118,136],"correct":[55,119],"short":[56],"using":[58],"de":[59,78],"Bruijn":[60,79],"graphs":[61],"implement":[63],"it":[64],"tool":[67],"called":[68],"Bcool.":[69],"As":[70],"first":[72],"step,":[73],"Bcool":[74],"constructs":[75],"compacted":[77],"graph":[80,85,105],"from":[81],"the":[82,89,114,154],"reads.":[83],"This":[84],"filtered":[87],"basis":[90],"k-mer":[92],"abundance":[93],"then":[94,107],"unitig":[96],"abundance,":[97],"thereby":[98],"removing":[99],"most":[100],"sequencing":[101],"errors.":[102],"The":[103,145],"cleaned":[104],"used":[108],"reference":[111],"which":[113],"are":[116,167],"mapped":[117],"them.":[120],"show":[122],"that":[123],"this":[124],"approach":[125],"yields":[126],"more":[127],"accurate":[128],"than":[130],"k-mer-spectrum":[131],"while":[133],"being":[134],"scalable":[135],"human-size":[137],"genomic":[138],"beyond.":[141],"AVAILABILITY":[142],"AND":[143],"IMPLEMENTATION:":[144],"implementation":[146],"open":[148],"source,":[149],"available":[150,168],"at":[151,169],"http://github.com/Malfoy/BCOOL":[152],"under":[153],"Affero":[155],"GPL":[156],"license":[157],"Bioconda":[161],"package.":[162],"SUPPLEMENTARY":[163],"INFORMATION:":[164],"Supplementary":[165],"data":[166],"Bioinformatics":[170],"online.":[171]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
