{"id":"https://openalex.org/W2950534703","doi":"https://doi.org/10.1093/bioinformatics/btz053","title":"Tracing the ancestry of operons in bacteria","display_name":"Tracing the ancestry of operons in bacteria","publication_year":2019,"publication_date":"2019-01-21","ids":{"openalex":"https://openalex.org/W2950534703","doi":"https://doi.org/10.1093/bioinformatics/btz053","mag":"2950534703","pmid":"https://pubmed.ncbi.nlm.nih.gov/30689726"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz053","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz053","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/17/2998/29591855/btz053.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/17/2998/29591855/btz053.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001785029","display_name":"Huy Nguyen","orcid":"https://orcid.org/0000-0002-6904-1500"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Huy N Nguyen","raw_affiliation_strings":["Iowa State University Department of Computer Science, , Ames, IA, USA","lowa State University Department of Veterinary Microbiology and Preventive Medicine, , Ames, IA, USA"],"affiliations":[{"raw_affiliation_string":"Iowa State University Department of Computer Science, , Ames, IA, USA","institution_ids":["https://openalex.org/I173911158"]},{"raw_affiliation_string":"lowa State University Department of Veterinary Microbiology and Preventive Medicine, , Ames, IA, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049139973","display_name":"Ashish Jain","orcid":"https://orcid.org/0000-0001-8190-2978"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ashish Jain","raw_affiliation_strings":["Iowa State University Department of Genetics, Development, and Cell Biology, , Ames, IA, USA","Iowa State University Program in Bioinformatics and Computational Biology, , Ames, IA, USA"],"affiliations":[{"raw_affiliation_string":"Iowa State University Department of Genetics, Development, and Cell Biology, , Ames, IA, USA","institution_ids":["https://openalex.org/I173911158"]},{"raw_affiliation_string":"Iowa State University Program in Bioinformatics and Computational Biology, , Ames, IA, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041404337","display_name":"Oliver Eulenstein","orcid":"https://orcid.org/0000-0002-5291-3798"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Oliver Eulenstein","raw_affiliation_strings":["Iowa State University Department of Computer Science, , Ames, IA, USA","Iowa State University Program in Bioinformatics and Computational Biology, , Ames, IA, USA"],"affiliations":[{"raw_affiliation_string":"Iowa State University Department of Computer Science, , Ames, IA, USA","institution_ids":["https://openalex.org/I173911158"]},{"raw_affiliation_string":"Iowa State University Program in Bioinformatics and Computational Biology, , Ames, IA, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041597050","display_name":"Iddo Friedberg","orcid":"https://orcid.org/0000-0002-1789-8000"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Iddo Friedberg","raw_affiliation_strings":["Iowa State University Program in Bioinformatics and Computational Biology, , Ames, IA, USA","lowa State University Department of Veterinary Microbiology and Preventive Medicine, , Ames, IA, USA"],"affiliations":[{"raw_affiliation_string":"Iowa State University Program in Bioinformatics and Computational Biology, , Ames, IA, USA","institution_ids":["https://openalex.org/I173911158"]},{"raw_affiliation_string":"lowa State University Department of Veterinary Microbiology and Preventive Medicine, , Ames, IA, USA","institution_ids":["https://openalex.org/I173911158"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5041597050"],"corresponding_institution_ids":["https://openalex.org/I173911158"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.7567,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.70859478,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"35","issue":"17","first_page":"2998","last_page":"3004"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10943","display_name":"Escherichia coli research studies","score":0.9573000073432922,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10943","display_name":"Escherichia coli research studies","score":0.9573000073432922,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9412999749183655,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11965","display_name":"Quantum, superfluid, helium dynamics","score":0.9406999945640564,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tracing","display_name":"Tracing","score":0.8029899597167969},{"id":"https://openalex.org/keywords/operon","display_name":"Operon","score":0.5828947424888611},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.5479183793067932},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.46020787954330444},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.42172670364379883},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4194403290748596},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.3282553553581238},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2510836720466614},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15460309386253357},{"id":"https://openalex.org/keywords/escherichia-coli","display_name":"Escherichia coli","score":0.13354989886283875},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12618166208267212}],"concepts":[{"id":"https://openalex.org/C138673069","wikidata":"https://www.wikidata.org/wiki/Q322229","display_name":"Tracing","level":2,"score":0.8029899597167969},{"id":"https://openalex.org/C203075996","wikidata":"https://www.wikidata.org/wiki/Q139677","display_name":"Operon","level":4,"score":0.5828947424888611},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.5479183793067932},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46020787954330444},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.42172670364379883},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4194403290748596},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.3282553553581238},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2510836720466614},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15460309386253357},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.13354989886283875},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12618166208267212}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009876","descriptor_name":"Operon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009876","descriptor_name":"Operon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009876","descriptor_name":"Operon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz053","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz053","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/17/2998/29591855/btz053.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30689726","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30689726","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz053","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz053","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/17/2998/29591855/btz053.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1400431565","display_name":null,"funder_award_id":"ABI-1551363","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3280646975","display_name":null,"funder_award_id":"ECC-1617626","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4452235272","display_name":null,"funder_award_id":"ABI-1458359","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G724859706","display_name":null,"funder_award_id":"National Science Foundation","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2950534703.pdf","grobid_xml":"https://content.openalex.org/works/W2950534703.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1554956811","https://openalex.org/W1561123533","https://openalex.org/W1883026703","https://openalex.org/W1913187248","https://openalex.org/W1963749370","https://openalex.org/W1964086051","https://openalex.org/W1966745866","https://openalex.org/W1976257434","https://openalex.org/W1988714210","https://openalex.org/W1995066323","https://openalex.org/W2008959928","https://openalex.org/W2022730625","https://openalex.org/W2031761997","https://openalex.org/W2051228317","https://openalex.org/W2053762233","https://openalex.org/W2065865092","https://openalex.org/W2066438497","https://openalex.org/W2082616165","https://openalex.org/W2099917117","https://openalex.org/W2104061580","https://openalex.org/W2107311753","https://openalex.org/W2108473040","https://openalex.org/W2111728961","https://openalex.org/W2115595730","https://openalex.org/W2121166240","https://openalex.org/W2127942101","https://openalex.org/W2151701000","https://openalex.org/W2157657843","https://openalex.org/W2162170584","https://openalex.org/W2164840182","https://openalex.org/W2166655850","https://openalex.org/W2176634422","https://openalex.org/W2242053395","https://openalex.org/W2265278721","https://openalex.org/W2738000206","https://openalex.org/W2951734692","https://openalex.org/W2952444689","https://openalex.org/W4229809574","https://openalex.org/W4234412813","https://openalex.org/W4302969465"],"related_works":["https://openalex.org/W1608194938","https://openalex.org/W2572774164","https://openalex.org/W2061086355","https://openalex.org/W2111346700","https://openalex.org/W2090900888","https://openalex.org/W1541592150","https://openalex.org/W1546742425","https://openalex.org/W2145489399","https://openalex.org/W2089533157","https://openalex.org/W1963749370"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-23T05:10:03.516525","created_date":"2025-10-10T00:00:00"}
