{"id":"https://openalex.org/W2910533555","doi":"https://doi.org/10.1093/bioinformatics/btz021","title":"METACLUSTER\u2014an R package for context-specific expression analysis of metabolic gene clusters","display_name":"METACLUSTER\u2014an R package for context-specific expression analysis of metabolic gene clusters","publication_year":2019,"publication_date":"2019-01-15","ids":{"openalex":"https://openalex.org/W2910533555","doi":"https://doi.org/10.1093/bioinformatics/btz021","mag":"2910533555","pmid":"https://pubmed.ncbi.nlm.nih.gov/30657869"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz021","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz021","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/17/3178/29591801/btz021.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/17/3178/29591801/btz021.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020606529","display_name":"Michael Banf","orcid":"https://orcid.org/0000-0002-4312-6004"},"institutions":[{"id":"https://openalex.org/I4210095419","display_name":"Department of Plant Biology","ror":"https://ror.org/00tdyb139","country_code":"US","type":"facility","lineage":["https://openalex.org/I196817621","https://openalex.org/I4210095419"]},{"id":"https://openalex.org/I196817621","display_name":"Carnegie Institution for Science","ror":"https://ror.org/04jr01610","country_code":"US","type":"funder","lineage":["https://openalex.org/I196817621"]},{"id":"https://openalex.org/I206895457","display_name":"University of Siegen","ror":"https://ror.org/02azyry73","country_code":"DE","type":"education","lineage":["https://openalex.org/I206895457"]}],"countries":["DE","US"],"is_corresponding":true,"raw_author_name":"Michael Banf","raw_affiliation_strings":["Carnegie Institution for Science Department of Plant Biology, , Stanford, CA, USA","EducatedGuess.ai , Siegen, Germany"],"affiliations":[{"raw_affiliation_string":"Carnegie Institution for Science Department of Plant Biology, , Stanford, CA, USA","institution_ids":["https://openalex.org/I196817621","https://openalex.org/I4210095419"]},{"raw_affiliation_string":"EducatedGuess.ai , Siegen, Germany","institution_ids":["https://openalex.org/I206895457"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044048227","display_name":"Kangmei Zhao","orcid":"https://orcid.org/0000-0003-1472-4993"},"institutions":[{"id":"https://openalex.org/I196817621","display_name":"Carnegie Institution for Science","ror":"https://ror.org/04jr01610","country_code":"US","type":"funder","lineage":["https://openalex.org/I196817621"]},{"id":"https://openalex.org/I4210095419","display_name":"Department of Plant Biology","ror":"https://ror.org/00tdyb139","country_code":"US","type":"facility","lineage":["https://openalex.org/I196817621","https://openalex.org/I4210095419"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kangmei Zhao","raw_affiliation_strings":["Carnegie Institution for Science Department of Plant Biology, , Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Carnegie Institution for Science Department of Plant Biology, , Stanford, CA, USA","institution_ids":["https://openalex.org/I196817621","https://openalex.org/I4210095419"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076665375","display_name":"Seung Y. Rhee","orcid":"https://orcid.org/0000-0002-7572-4762"},"institutions":[{"id":"https://openalex.org/I4210095419","display_name":"Department of Plant Biology","ror":"https://ror.org/00tdyb139","country_code":"US","type":"facility","lineage":["https://openalex.org/I196817621","https://openalex.org/I4210095419"]},{"id":"https://openalex.org/I196817621","display_name":"Carnegie Institution for Science","ror":"https://ror.org/04jr01610","country_code":"US","type":"funder","lineage":["https://openalex.org/I196817621"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Seung Y Rhee","raw_affiliation_strings":["Carnegie Institution for Science Department of Plant Biology, , Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Carnegie Institution for Science Department of Plant Biology, , Stanford, CA, USA","institution_ids":["https://openalex.org/I196817621","https://openalex.org/I4210095419"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5020606529","https://openalex.org/A5076665375"],"corresponding_institution_ids":["https://openalex.org/I196817621","https://openalex.org/I206895457","https://openalex.org/I4210095419"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.2845,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.79475976,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"35","issue":"17","first_page":"3178","last_page":"3180"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11882","display_name":"Plant biochemistry and biosynthesis","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.7345989346504211},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.67740797996521},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6460943818092346},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.5473371744155884},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5424121618270874},{"id":"https://openalex.org/keywords/metabolic-pathway","display_name":"Metabolic pathway","score":0.4899088740348816},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4390905201435089},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4367527365684509},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.39106523990631104},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.30738094449043274},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.061567991971969604}],"concepts":[{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.7345989346504211},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.67740797996521},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6460943818092346},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.5473371744155884},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5424121618270874},{"id":"https://openalex.org/C192989942","wikidata":"https://www.wikidata.org/wiki/Q68685","display_name":"Metabolic pathway","level":3,"score":0.4899088740348816},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4390905201435089},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4367527365684509},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.39106523990631104},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.30738094449043274},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.061567991971969604},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053898","descriptor_name":"Biosynthetic Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053898","descriptor_name":"Biosynthetic Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053898","descriptor_name":"Biosynthetic Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btz021","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz021","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/17/3178/29591801/btz021.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30657869","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30657869","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:osti.gov:1560354","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1560354","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:osti.gov:2308765","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/2308765","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6735823","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6735823","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz021","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz021","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/17/3178/29591801/btz021.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2897611530","display_name":null,"funder_award_id":"IOS-1026003","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5445263967","display_name":null,"funder_award_id":"DE-SC0008769","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G5530709994","display_name":null,"funder_award_id":"IOS-1546838","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7119246951","display_name":null,"funder_award_id":"1U01GM110699\u201301A1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8079003079","display_name":null,"funder_award_id":"DE-SC0018277","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320308269","display_name":"Alexander von Humboldt-Stiftung","ror":"https://ror.org/012kf4317"},{"id":"https://openalex.org/F4320316765","display_name":"Carnegie Institution for Science","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2910533555.pdf","grobid_xml":"https://content.openalex.org/works/W2910533555.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1586393146","https://openalex.org/W1849166904","https://openalex.org/W1906542637","https://openalex.org/W1992581858","https://openalex.org/W2003562022","https://openalex.org/W2012598119","https://openalex.org/W2112767859","https://openalex.org/W2135714434","https://openalex.org/W2137574681","https://openalex.org/W2150283664","https://openalex.org/W2154003587","https://openalex.org/W2170455232","https://openalex.org/W2281192264","https://openalex.org/W2305780754","https://openalex.org/W2589515024","https://openalex.org/W2607186010","https://openalex.org/W2609551972","https://openalex.org/W2802825342","https://openalex.org/W2949792062","https://openalex.org/W2951775080","https://openalex.org/W6733827235"],"related_works":["https://openalex.org/W2392243736","https://openalex.org/W2754214645","https://openalex.org/W86652014","https://openalex.org/W3129895999","https://openalex.org/W2328518092","https://openalex.org/W3101249758","https://openalex.org/W2382079200","https://openalex.org/W2374091470","https://openalex.org/W4388218547","https://openalex.org/W2379703849"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
