{"id":"https://openalex.org/W2787226980","doi":"https://doi.org/10.1093/bioinformatics/btz011","title":"AQUAPONY: visualization and interpretation of phylogeographic information on phylogenetic trees","display_name":"AQUAPONY: visualization and interpretation of phylogeographic information on phylogenetic trees","publication_year":2019,"publication_date":"2019-01-11","ids":{"openalex":"https://openalex.org/W2787226980","doi":"https://doi.org/10.1093/bioinformatics/btz011","mag":"2787226980","pmid":"https://pubmed.ncbi.nlm.nih.gov/30649190"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz011","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz011","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/17/3163/29591914/btz011.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/17/3163/29591914/btz011.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063113085","display_name":"Bastien Cazaux","orcid":"https://orcid.org/0000-0002-1761-4354"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Bastien Cazaux","raw_affiliation_strings":["Institut de Biologie Computationelle , Montpellier, France","Universit\u00e9 Montpellier Department of Computer Science, LIRMM, UMR 5506, CNRS and , Montpellier, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut de Biologie Computationelle , Montpellier, France","institution_ids":[]},{"raw_affiliation_string":"Universit\u00e9 Montpellier Department of Computer Science, LIRMM, UMR 5506, CNRS and , Montpellier, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I1294671590","https://openalex.org/I4210101743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034323327","display_name":"Guillaume Castel","orcid":"https://orcid.org/0000-0003-2989-3087"},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I24906876","display_name":"Institut Agro Montpellier","ror":"https://ror.org/03rnk6m14","country_code":"FR","type":"education","lineage":["https://openalex.org/I24906876","https://openalex.org/I4210117091","https://openalex.org/I4399657933"]},{"id":"https://openalex.org/I4210136436","display_name":"Institut Agro Montpelier","ror":null,"country_code":"FR","type":null,"lineage":["https://openalex.org/I4210136436"]},{"id":"https://openalex.org/I4210147278","display_name":"Centre de Biologie pour la Gestion des Populations","ror":"https://ror.org/05h7ddb14","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I24906876","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210117091","https://openalex.org/I4210117091","https://openalex.org/I4210131494","https://openalex.org/I4210147278","https://openalex.org/I4210166444","https://openalex.org/I4399657933","https://openalex.org/I4399657933","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Guillaume Castel","raw_affiliation_strings":["Forest, Grassland and Freshwater Ecology , CBGP, INRA, CIRAD, IRD, Montpellier SupAgro, , Montpellier, France","Institut de Biologie Computationelle , Montpellier, France","Univ Montpellier , CBGP, INRA, CIRAD, IRD, Montpellier SupAgro, , Montpellier, France","Forest, Grassland and Freshwater Ecology, CBGP, INRA, CIRAD, IRD, Montpellier SupAgro, Univ Montpellier, Montpellier, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Forest, Grassland and Freshwater Ecology , CBGP, INRA, CIRAD, IRD, Montpellier SupAgro, , Montpellier, France","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I4210166444","https://openalex.org/I4210136436"]},{"raw_affiliation_string":"Institut de Biologie Computationelle , Montpellier, France","institution_ids":[]},{"raw_affiliation_string":"Univ Montpellier , CBGP, INRA, CIRAD, IRD, Montpellier SupAgro, , Montpellier, France","institution_ids":["https://openalex.org/I24906876","https://openalex.org/I131077856","https://openalex.org/I19894307","https://openalex.org/I4210166444","https://openalex.org/I4210147278"]},{"raw_affiliation_string":"Forest, Grassland and Freshwater Ecology, CBGP, INRA, CIRAD, IRD, Montpellier SupAgro, Univ Montpellier, Montpellier, France","institution_ids":["https://openalex.org/I24906876","https://openalex.org/I131077856","https://openalex.org/I19894307","https://openalex.org/I4210166444","https://openalex.org/I4210147278"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010392318","display_name":"\u00c9ric Rivals","orcid":"https://orcid.org/0000-0003-3791-3973"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Eric Rivals","raw_affiliation_strings":["Institut de Biologie Computationelle , Montpellier, France","Universit\u00e9 Montpellier Department of Computer Science, LIRMM, UMR 5506, CNRS and , Montpellier, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut de Biologie Computationelle , Montpellier, France","institution_ids":[]},{"raw_affiliation_string":"Universit\u00e9 Montpellier Department of Computer Science, LIRMM, UMR 5506, CNRS and , Montpellier, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I1294671590","https://openalex.org/I4210101743"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5010392318"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210101743"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.3418,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.58090829,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"35","issue":"17","first_page":"3163","last_page":"3165"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.20919999480247498,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.20919999480247498,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.07800000160932541,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10895","display_name":"Species Distribution and Climate Change","score":0.050200000405311584,"subfield":{"id":"https://openalex.org/subfields/2302","display_name":"Ecological Modeling"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.7141596674919128},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6756389737129211},{"id":"https://openalex.org/keywords/javascript","display_name":"JavaScript","score":0.6706897616386414},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.6079471111297607},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5894511938095093},{"id":"https://openalex.org/keywords/rendering","display_name":"Rendering (computer graphics)","score":0.5131645798683167},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.45383220911026},{"id":"https://openalex.org/keywords/interpretation","display_name":"Interpretation (philosophy)","score":0.42793920636177063},{"id":"https://openalex.org/keywords/interactive-visualization","display_name":"Interactive visualization","score":0.4238138496875763},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.416939914226532},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.41083475947380066},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41054973006248474},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.34500205516815186},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3389800190925598},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3277813494205475},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3011743426322937},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24156224727630615},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.20134523510932922},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13507625460624695}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.7141596674919128},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6756389737129211},{"id":"https://openalex.org/C544833334","wikidata":"https://www.wikidata.org/wiki/Q2005","display_name":"JavaScript","level":2,"score":0.6706897616386414},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.6079471111297607},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5894511938095093},{"id":"https://openalex.org/C205711294","wikidata":"https://www.wikidata.org/wiki/Q176953","display_name":"Rendering (computer graphics)","level":2,"score":0.5131645798683167},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.45383220911026},{"id":"https://openalex.org/C527412718","wikidata":"https://www.wikidata.org/wiki/Q855395","display_name":"Interpretation (philosophy)","level":2,"score":0.42793920636177063},{"id":"https://openalex.org/C64073096","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Interactive visualization","level":3,"score":0.4238138496875763},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.416939914226532},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.41083475947380066},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41054973006248474},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.34500205516815186},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3389800190925598},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3277813494205475},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3011743426322937},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24156224727630615},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.20134523510932922},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13507625460624695},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058974","descriptor_name":"Phylogeography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058974","descriptor_name":"Phylogeography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058974","descriptor_name":"Phylogeography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/btz011","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz011","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/17/3163/29591914/btz011.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30649190","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30649190","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:hal-02733925v1","is_oa":true,"landing_page_url":"https://hal.inrae.fr/hal-02733925","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journ\u00e9es Ouvertes en Biologie, Informatique et Math\u00e9matiques (JOBIM)","raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"pmh:oai:HAL:hal-02787814v1","is_oa":false,"landing_page_url":"https://hal.inrae.fr/hal-02787814","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2018","raw_type":"Software"},{"id":"pmh:oai:HAL:lirmm-01702654v1","is_oa":true,"landing_page_url":"https://hal-lirmm.ccsd.cnrs.fr/lirmm-01702654","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://hal-lirmm.ccsd.cnrs.fr/lirmm-01702654","raw_type":"\\ninfo:eu-repo/semantics/preprint\\n"},{"id":"pmh:oai:HAL:lirmm-01980994v1","is_oa":false,"landing_page_url":"https://hal-lirmm.ccsd.cnrs.fr/lirmm-01980994","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2019, 35 (17), pp.3163-3165. &#x27E8;10.1093/bioinformatics/btz011&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:prodinra.inra.fr:461058","is_oa":false,"landing_page_url":"http://prodinra.inra.fr/record/461058","pdf_url":null,"source":{"id":"https://openalex.org/S4306400794","display_name":"Prodinra (INRA Bordeaux-Aquitaine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210088668","host_organization_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","host_organization_lineage":["https://openalex.org/I4210088668"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journ\u00e9es Ouvertes en Biologie, Informatique et Math\u00e9matiques : JOBIM 2018 Abstracts. 2018; Journ\u00e9es Ouvertes en Biologie, Informatique et Math\u00e9matiques (JOBIM 2018), Marseilles, FRA, 2018-07-03-2018-07-06, 80-80","raw_type":"PROCEEDING_PAPER"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz011","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz011","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/17/3163/29591914/btz011.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.4300000071525574,"display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G6115547468","display_name":null,"funder_award_id":"ANR-11-BINF-0002","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2787226980.pdf","grobid_xml":"https://content.openalex.org/works/W2787226980.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W1521650410","https://openalex.org/W1991932415","https://openalex.org/W2105811945","https://openalex.org/W2130333286","https://openalex.org/W2145009248","https://openalex.org/W2146058063","https://openalex.org/W2153432740"],"related_works":["https://openalex.org/W2795601048","https://openalex.org/W2403324299","https://openalex.org/W2621177934","https://openalex.org/W4286287737","https://openalex.org/W1844100222","https://openalex.org/W3009852816","https://openalex.org/W2150650310","https://openalex.org/W2513223212","https://openalex.org/W2169602156","https://openalex.org/W42576273"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1],"visualization":[2],"and":[3,11,39,54,76,122,142,159,188],"interpretation":[4,146],"of":[5,112,147],"evolutionary":[6,47,98,148],"spatiotemporal":[7],"scenarios":[8,82,127],"is":[9,180],"broadly":[10],"increasingly":[12],"used":[13,192],"in":[14,36,182],"infectious":[15],"disease":[16],"research,":[17],"ecology":[18],"or":[19,80,119],"agronomy.":[20],"Using":[21],"probabilistic":[22],"frameworks,":[23],"well-known":[24],"tools":[25,43],"can":[26,44,66,107,123,170,189],"infer":[27],"from":[28],"molecular":[29],"data":[30],"ancestral":[31,52,64,101,113],"traits":[32],"for":[33,166],"internal":[34],"nodes":[35,65],"a":[37,87,120,129,133],"phylogeny,":[38],"numerous":[40],"phylogenetic":[41],"rendering":[42],"display":[45,111],"such":[46,51,94],"trees.":[48],"However,":[49],"visualizing":[50],"information":[53,114],"its":[55],"uncertainty":[56,135],"on":[57,115],"the":[58,105,110,116,140,144,162],"tree":[59,99,118,141,163],"remains":[60],"tedious.":[61],"For":[62],"instance,":[63],"be":[67,171,190],"associated":[68],"to":[69,132,156],"several":[70,78],"geographical":[71],"annotations":[72],"with":[73,100],"close":[74],"probabilities":[75],"thus,":[77],"migration":[79],"transmission":[81],"exist.":[83],"RESULTS:":[84],"We":[85],"expose":[86],"web-based":[88],"tool,":[89],"named":[90],"AQUAPONY,":[91],"that":[92],"facilitates":[93],"operations.":[95],"Given":[96],"an":[97],"(e.g.":[102],"geographical)":[103],"annotations,":[104],"user":[106,157],"easily":[108],"control":[109],"entire":[117],"subtree,":[121],"view":[124],"alternative":[125],"phylogeographic":[126],"along":[128],"branch":[130],"according":[131],"chosen":[134],"threshold.":[136],"AQUAPONY":[137,179],"interactively":[138],"visualizes":[139],"eases":[143],"objective":[145],"scenarios.":[149],"AQUAPONY's":[150],"implementation":[151],"makes":[152],"it":[153],"highly":[154],"responsive":[155],"interaction,":[158],"instantaneously":[160],"updates":[161],"visualizations":[164],"even":[165],"large":[167],"trees":[168],"(which":[169],"exported":[172],"as":[173],"image":[174],"files).":[175],"AVAILABILITY":[176],"AND":[177],"IMPLEMENTATION:":[178],"coded":[181],"JavaScript/HTML,":[183],"available":[184],"under":[185],"Cecill":[186],"license,":[187],"freely":[191],"at":[193],"http://www.atgc-montpellier.fr/aquapony/.":[194]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
