{"id":"https://openalex.org/W2909465613","doi":"https://doi.org/10.1093/bioinformatics/btz002","title":"Streamlined analysis of LINCS L1000 data with the slinky package for R","display_name":"Streamlined analysis of LINCS L1000 data with the slinky package for R","publication_year":2019,"publication_date":"2019-01-04","ids":{"openalex":"https://openalex.org/W2909465613","doi":"https://doi.org/10.1093/bioinformatics/btz002","mag":"2909465613","pmid":"https://pubmed.ncbi.nlm.nih.gov/30629124"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz002","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz002","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019939988","display_name":"Eric J. Kort","orcid":"https://orcid.org/0000-0002-9966-7483"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]},{"id":"https://openalex.org/I1317189400","display_name":"Van Andel Institute","ror":"https://ror.org/00wm07d60","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1317189400"]},{"id":"https://openalex.org/I146183641","display_name":"Spectrum Health","ror":"https://ror.org/02ahxdd04","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I146183641"]},{"id":"https://openalex.org/I4210096007","display_name":"Corewell Health Blodgett Hospital","ror":"https://ror.org/00qy68j92","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210096007","https://openalex.org/I4392738273"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Eric J Kort","raw_affiliation_strings":["Michigan State University, East Lansing Department of Pediatrics and Human Development, , MI, USA","Van Andel Research Institute, Grand Rapids DeVos Cardiovascular Research Program, Spectrum Health and , MI, USA"],"affiliations":[{"raw_affiliation_string":"Michigan State University, East Lansing Department of Pediatrics and Human Development, , MI, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Van Andel Research Institute, Grand Rapids DeVos Cardiovascular Research Program, Spectrum Health and , MI, USA","institution_ids":["https://openalex.org/I1317189400","https://openalex.org/I4210096007","https://openalex.org/I146183641"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069317017","display_name":"Stefan Jovinge","orcid":"https://orcid.org/0000-0002-8446-0228"},"institutions":[{"id":"https://openalex.org/I146183641","display_name":"Spectrum Health","ror":"https://ror.org/02ahxdd04","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I146183641"]},{"id":"https://openalex.org/I1317189400","display_name":"Van Andel Institute","ror":"https://ror.org/00wm07d60","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1317189400"]},{"id":"https://openalex.org/I4210096007","display_name":"Corewell Health Blodgett Hospital","ror":"https://ror.org/00qy68j92","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210096007","https://openalex.org/I4392738273"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stefan Jovinge","raw_affiliation_strings":["Van Andel Research Institute, Grand Rapids DeVos Cardiovascular Research Program, Spectrum Health and , MI, USA"],"affiliations":[{"raw_affiliation_string":"Van Andel Research Institute, Grand Rapids DeVos Cardiovascular Research Program, Spectrum Health and , MI, USA","institution_ids":["https://openalex.org/I1317189400","https://openalex.org/I4210096007","https://openalex.org/I146183641"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5019939988"],"corresponding_institution_ids":["https://openalex.org/I1317189400","https://openalex.org/I146183641","https://openalex.org/I4210096007","https://openalex.org/I87216513"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.2557,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.54277485,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"35","issue":"17","first_page":"3176","last_page":"3177"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.9193158149719238},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7385050058364868},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6853747367858887},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.6833480596542358},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.6023236513137817},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5456573963165283},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34816884994506836},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3244241178035736},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.29650983214378357},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.1876973807811737},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1853327453136444},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.16135704517364502},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09806960821151733}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.9193158149719238},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7385050058364868},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6853747367858887},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.6833480596542358},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.6023236513137817},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5456573963165283},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34816884994506836},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3244241178035736},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.29650983214378357},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.1876973807811737},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1853327453136444},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.16135704517364502},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09806960821151733},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz002","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz002","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30629124","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30629124","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4399999976158142,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"},{"score":0.41999998688697815,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W1973094248","https://openalex.org/W2059005938","https://openalex.org/W2102074241","https://openalex.org/W2121604817","https://openalex.org/W2128054164","https://openalex.org/W2612467560","https://openalex.org/W2768977980","https://openalex.org/W2791340464"],"related_works":["https://openalex.org/W2982252354","https://openalex.org/W2728564446","https://openalex.org/W3045904767","https://openalex.org/W2161868542","https://openalex.org/W2140163842","https://openalex.org/W3156537409","https://openalex.org/W2747931568","https://openalex.org/W2921090651","https://openalex.org/W2133055377","https://openalex.org/W2287365612"],"abstract_inverted_index":{"Slinky":[0],"is":[1],"freely":[2],"available":[3],"as":[4],"an":[5],"R":[6],"package":[7],"at":[8],"http://bioconductor.org/packages/slinky.":[9]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
