{"id":"https://openalex.org/W2902625972","doi":"https://doi.org/10.1093/bioinformatics/bty968","title":"BlendMol: advanced macromolecular visualization in Blender","display_name":"BlendMol: advanced macromolecular visualization in Blender","publication_year":2018,"publication_date":"2018-11-26","ids":{"openalex":"https://openalex.org/W2902625972","doi":"https://doi.org/10.1093/bioinformatics/bty968","mag":"2902625972"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty968","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty968","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/13/2323/28878358/bty968.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/13/2323/28878358/bty968.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084976210","display_name":"Jacob D. Durrant","orcid":"https://orcid.org/0000-0002-5808-4097"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jacob D Durrant","raw_affiliation_strings":["Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA","institution_ids":["https://openalex.org/I170201317"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5084976210"],"corresponding_institution_ids":["https://openalex.org/I170201317"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":4.6471,"has_fulltext":true,"cited_by_count":36,"citation_normalized_percentile":{"value":0.94968553,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"35","issue":"13","first_page":"2323","last_page":"2325"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9882000088691711,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.8353946208953857},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.8266549706459045},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7983781695365906},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7266347408294678},{"id":"https://openalex.org/keywords/rendering","display_name":"Rendering (computer graphics)","score":0.6909345388412476},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.6687623858451843},{"id":"https://openalex.org/keywords/outreach","display_name":"Outreach","score":0.5456089377403259},{"id":"https://openalex.org/keywords/interactive-visualization","display_name":"Interactive visualization","score":0.4761412441730499},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.46091228723526},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4455205798149109},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.3333020806312561},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3215782046318054},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.21193304657936096},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1529155969619751}],"concepts":[{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.8353946208953857},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8266549706459045},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7983781695365906},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7266347408294678},{"id":"https://openalex.org/C205711294","wikidata":"https://www.wikidata.org/wiki/Q176953","display_name":"Rendering (computer graphics)","level":2,"score":0.6909345388412476},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.6687623858451843},{"id":"https://openalex.org/C2781400479","wikidata":"https://www.wikidata.org/wiki/Q11640","display_name":"Outreach","level":2,"score":0.5456089377403259},{"id":"https://openalex.org/C64073096","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Interactive visualization","level":3,"score":0.4761412441730499},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.46091228723526},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4455205798149109},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.3333020806312561},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3215782046318054},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.21193304657936096},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1529155969619751},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bty968","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty968","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/13/2323/28878358/bty968.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6596883","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6596883","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty968","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty968","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/13/2323/28878358/bty968.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.5899999737739563}],"awards":[],"funders":[{"id":"https://openalex.org/F4320310174","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305"},{"id":"https://openalex.org/F4320332162","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2902625972.pdf","grobid_xml":"https://content.openalex.org/works/W2902625972.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1992412606","https://openalex.org/W2011703027","https://openalex.org/W2029667189","https://openalex.org/W2052150953","https://openalex.org/W2069152576","https://openalex.org/W2140047797","https://openalex.org/W2147085530","https://openalex.org/W2346539852","https://openalex.org/W2620969365","https://openalex.org/W2776406038"],"related_works":["https://openalex.org/W2410491632","https://openalex.org/W2506070082","https://openalex.org/W2109742611","https://openalex.org/W3121998239","https://openalex.org/W3211295480","https://openalex.org/W207660752","https://openalex.org/W3121352828","https://openalex.org/W3034716491","https://openalex.org/W4240625990","https://openalex.org/W2170060741"],"abstract_inverted_index":{"Abstract":[0],"Summary":[1],"Programs":[2],"such":[3],"as":[4],"VMD":[5,65],"and":[6,30,83,86],"PyMOL":[7,67],"are":[8,73,105],"excellent":[9],"tools":[10],"for":[11,43,53,76],"analyzing":[12],"macromolecular":[13],"structures,":[14],"but":[15,46],"they":[16],"do":[17],"not":[18],"implement":[19],"many":[20],"of":[21,92],"the":[22,28,35],"advanced":[23],"rendering":[24],"techniques":[25],"common":[26],"in":[27,78,99],"film":[29],"video-game":[31],"industries.":[32],"In":[33],"contrast,":[34],"open-source":[36],"program":[37],"Blender":[38,61],"is":[39,50,89,97],"a":[40,60],"general-purpose":[41],"tool":[42],"industry-standard":[44],"rendering/visualization,":[45],"its":[47],"user":[48],"interface":[49],"poorly":[51],"suited":[52,75],"rigorous":[54],"scientific":[55],"analysis.":[56],"We":[57],"present":[58],"BlendMol,":[59],"plugin":[62],"that":[63],"imports":[64],"or":[66],"scenes":[68],"into":[69],"Blender.":[70],"BlendMol-generated":[71],"images":[72],"well":[74],"use":[77],"manuscripts,":[79],"outreach":[80],"programs,":[81],"websites":[82],"classes.":[84],"Availability":[85],"implementation":[87],"BlendMol":[88],"available":[90,106],"free":[91],"charge":[93],"from":[94],"http://durrantlab.com/blendmol/.":[95],"It":[96],"written":[98],"Python.":[100],"Supplementary":[101,103],"information":[102],"data":[104],"at":[107],"Bioinformatics":[108],"online.":[109]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":4}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2018-12-11T00:00:00"}
