{"id":"https://openalex.org/W2900903885","doi":"https://doi.org/10.1093/bioinformatics/bty953","title":"DeepCrystal: a deep learning framework for sequence-based protein crystallization prediction","display_name":"DeepCrystal: a deep learning framework for sequence-based protein crystallization prediction","publication_year":2018,"publication_date":"2018-11-17","ids":{"openalex":"https://openalex.org/W2900903885","doi":"https://doi.org/10.1093/bioinformatics/bty953","mag":"2900903885","pmid":"https://pubmed.ncbi.nlm.nih.gov/30462171"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty953","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty953","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012462452","display_name":"Abdurrahman Elbasir","orcid":"https://orcid.org/0000-0003-1677-7845"},"institutions":[{"id":"https://openalex.org/I4210144839","display_name":"Hamad bin Khalifa University","ror":"https://ror.org/03eyq4y97","country_code":"QA","type":"education","lineage":["https://openalex.org/I4210144839"]}],"countries":["QA"],"is_corresponding":false,"raw_author_name":"Abdurrahman Elbasir","raw_affiliation_strings":["College of Science and Engineering, Hamad Bin Khalifa University, Doha, Qatar"],"affiliations":[{"raw_affiliation_string":"College of Science and Engineering, Hamad Bin Khalifa University, Doha, Qatar","institution_ids":["https://openalex.org/I4210144839"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101407054","display_name":"M. Balasubramanian","orcid":"https://orcid.org/0000-0003-1140-883X"},"institutions":[{"id":"https://openalex.org/I4210144839","display_name":"Hamad bin Khalifa University","ror":"https://ror.org/03eyq4y97","country_code":"QA","type":"education","lineage":["https://openalex.org/I4210144839"]}],"countries":["QA"],"is_corresponding":false,"raw_author_name":"Balasubramanian Moovarkumudalvan","raw_affiliation_strings":["Qatar Biomedical Research Institute and Hamad Bin Khalifa University, Doha, Qatar"],"affiliations":[{"raw_affiliation_string":"Qatar Biomedical Research Institute and Hamad Bin Khalifa University, Doha, Qatar","institution_ids":["https://openalex.org/I4210144839"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067973729","display_name":"Khalid Kunji","orcid":"https://orcid.org/0000-0003-2946-512X"},"institutions":[{"id":"https://openalex.org/I4210144839","display_name":"Hamad bin Khalifa University","ror":"https://ror.org/03eyq4y97","country_code":"QA","type":"education","lineage":["https://openalex.org/I4210144839"]}],"countries":["QA"],"is_corresponding":false,"raw_author_name":"Khalid Kunji","raw_affiliation_strings":["Qatar Computing Research Institute, Hamad Bin Khalifa University, Doha, Qatar"],"affiliations":[{"raw_affiliation_string":"Qatar Computing Research Institute, Hamad Bin Khalifa University, Doha, Qatar","institution_ids":["https://openalex.org/I4210144839"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010124716","display_name":"Prasanna R. Kolatkar","orcid":"https://orcid.org/0000-0003-4970-5944"},"institutions":[{"id":"https://openalex.org/I4210144839","display_name":"Hamad bin Khalifa University","ror":"https://ror.org/03eyq4y97","country_code":"QA","type":"education","lineage":["https://openalex.org/I4210144839"]}],"countries":["QA"],"is_corresponding":false,"raw_author_name":"Prasanna R Kolatkar","raw_affiliation_strings":["Qatar Biomedical Research Institute and Hamad Bin Khalifa University, Doha, Qatar"],"affiliations":[{"raw_affiliation_string":"Qatar Biomedical Research Institute and Hamad Bin Khalifa University, Doha, Qatar","institution_ids":["https://openalex.org/I4210144839"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055826525","display_name":"Raghvendra Mall","orcid":"https://orcid.org/0000-0003-1779-3150"},"institutions":[{"id":"https://openalex.org/I4210144839","display_name":"Hamad bin Khalifa University","ror":"https://ror.org/03eyq4y97","country_code":"QA","type":"education","lineage":["https://openalex.org/I4210144839"]}],"countries":["QA"],"is_corresponding":true,"raw_author_name":"Raghvendra Mall","raw_affiliation_strings":["Qatar Computing Research Institute, Hamad Bin Khalifa University, Doha, Qatar"],"affiliations":[{"raw_affiliation_string":"Qatar Computing Research Institute, Hamad Bin Khalifa University, Doha, Qatar","institution_ids":["https://openalex.org/I4210144839"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013350725","display_name":"Halima Bensmail","orcid":"https://orcid.org/0000-0001-6700-5752"},"institutions":[{"id":"https://openalex.org/I4210144839","display_name":"Hamad bin Khalifa University","ror":"https://ror.org/03eyq4y97","country_code":"QA","type":"education","lineage":["https://openalex.org/I4210144839"]}],"countries":["QA"],"is_corresponding":true,"raw_author_name":"Halima Bensmail","raw_affiliation_strings":["College of Science and Engineering, Hamad Bin Khalifa University, Doha, Qatar","Qatar Computing Research Institute, Hamad Bin Khalifa University, Doha, Qatar"],"affiliations":[{"raw_affiliation_string":"College of Science and Engineering, Hamad Bin Khalifa University, Doha, Qatar","institution_ids":["https://openalex.org/I4210144839"]},{"raw_affiliation_string":"Qatar Computing Research Institute, Hamad Bin Khalifa University, Doha, Qatar","institution_ids":["https://openalex.org/I4210144839"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5013350725","https://openalex.org/A5055826525"],"corresponding_institution_ids":["https://openalex.org/I4210144839"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.5233,"has_fulltext":false,"cited_by_count":52,"citation_normalized_percentile":{"value":0.90555766,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"35","issue":"13","first_page":"2216","last_page":"2225"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6780892610549927},{"id":"https://openalex.org/keywords/protein-crystallization","display_name":"Protein crystallization","score":0.6152711510658264},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5807284712791443},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5379003286361694},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5162805914878845},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.476005882024765},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.4376228153705597},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.38264843821525574},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.35294434428215027},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3471892476081848},{"id":"https://openalex.org/keywords/crystallization","display_name":"Crystallization","score":0.3470330238342285},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.18322139978408813},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11181378364562988},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.08819642663002014}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6780892610549927},{"id":"https://openalex.org/C153064111","wikidata":"https://www.wikidata.org/wiki/Q1281033","display_name":"Protein crystallization","level":3,"score":0.6152711510658264},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5807284712791443},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5379003286361694},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5162805914878845},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.476005882024765},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.4376228153705597},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.38264843821525574},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.35294434428215027},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3471892476081848},{"id":"https://openalex.org/C203036418","wikidata":"https://www.wikidata.org/wiki/Q284256","display_name":"Crystallization","level":2,"score":0.3470330238342285},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.18322139978408813},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11181378364562988},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.08819642663002014},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003460","descriptor_name":"Crystallization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003460","descriptor_name":"Crystallization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003460","descriptor_name":"Crystallization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bty953","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty953","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30462171","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30462171","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5974248144","display_name":null,"funder_award_id":"IGP1 2014-004","funder_id":"https://openalex.org/F4320334458","funder_display_name":"Qatar Biomedical Research Institute, Hamad Bin Khalifa University"}],"funders":[{"id":"https://openalex.org/F4320334458","display_name":"Qatar Biomedical Research Institute, Hamad Bin Khalifa University","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":55,"referenced_works":["https://openalex.org/W1501531009","https://openalex.org/W1678356000","https://openalex.org/W1903510838","https://openalex.org/W1989858799","https://openalex.org/W2009630602","https://openalex.org/W2014694459","https://openalex.org/W2073793320","https://openalex.org/W2082698293","https://openalex.org/W2085729749","https://openalex.org/W2095705004","https://openalex.org/W2098101628","https://openalex.org/W2108921801","https://openalex.org/W2112796928","https://openalex.org/W2119821739","https://openalex.org/W2120615054","https://openalex.org/W2136299394","https://openalex.org/W2147702777","https://openalex.org/W2163341755","https://openalex.org/W2163605009","https://openalex.org/W2169041564","https://openalex.org/W2170240176","https://openalex.org/W2170747616","https://openalex.org/W2345051977","https://openalex.org/W2413365859","https://openalex.org/W2440774392","https://openalex.org/W2477766047","https://openalex.org/W2554617421","https://openalex.org/W2584305206","https://openalex.org/W2605409611","https://openalex.org/W2615066396","https://openalex.org/W2649433081","https://openalex.org/W2743980493","https://openalex.org/W2766578745","https://openalex.org/W2776730476","https://openalex.org/W2792954461","https://openalex.org/W2794004073","https://openalex.org/W2882319491","https://openalex.org/W2911964244","https://openalex.org/W2949300694","https://openalex.org/W2949867299","https://openalex.org/W2963012544","https://openalex.org/W2963347351","https://openalex.org/W2963374347","https://openalex.org/W4239510810","https://openalex.org/W4256301573","https://openalex.org/W6674330103","https://openalex.org/W6678193448","https://openalex.org/W6684191040","https://openalex.org/W6685053522","https://openalex.org/W6685082496","https://openalex.org/W6704695948","https://openalex.org/W6733068509","https://openalex.org/W6736518430","https://openalex.org/W6742541350","https://openalex.org/W6749500503"],"related_works":["https://openalex.org/W2784101170","https://openalex.org/W2053780691","https://openalex.org/W2010668049","https://openalex.org/W2037651584","https://openalex.org/W4383216597","https://openalex.org/W3208131821","https://openalex.org/W2384248686","https://openalex.org/W2401779002","https://openalex.org/W1963745920","https://openalex.org/W2751970110"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
