{"id":"https://openalex.org/W2900668849","doi":"https://doi.org/10.1093/bioinformatics/bty940","title":"SeQuiLa: an elastic, fast and scalable SQL-oriented solution for processing and querying genomic intervals","display_name":"SeQuiLa: an elastic, fast and scalable SQL-oriented solution for processing and querying genomic intervals","publication_year":2018,"publication_date":"2018-11-13","ids":{"openalex":"https://openalex.org/W2900668849","doi":"https://doi.org/10.1093/bioinformatics/bty940","mag":"2900668849","pmid":"https://pubmed.ncbi.nlm.nih.gov/30428005"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty940","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty940","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018800555","display_name":"Marek Wiewi\u00f3rka","orcid":"https://orcid.org/0000-0002-8724-5646"},"institutions":[{"id":"https://openalex.org/I4210087266","display_name":"Institute of Computer Science","ror":"https://ror.org/003fvp964","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210087266","https://openalex.org/I99542240"]},{"id":"https://openalex.org/I108403487","display_name":"Warsaw University of Technology","ror":"https://ror.org/00y0xnp53","country_code":"PL","type":"education","lineage":["https://openalex.org/I108403487"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Marek Wiewi\u00f3rka","raw_affiliation_strings":["Institute of Computer Science, Warsaw University of Technology, Warsaw, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, Warsaw University of Technology, Warsaw, Poland","institution_ids":["https://openalex.org/I108403487","https://openalex.org/I4210087266"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024977036","display_name":"Anna Le\u015bniewska","orcid":"https://orcid.org/0000-0003-3463-9622"},"institutions":[{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Anna Le\u015bniewska","raw_affiliation_strings":["Department of Computer Science, Poznan University of Technology, Pozna\u0144, Poland"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Poznan University of Technology, Pozna\u0144, Poland","institution_ids":["https://openalex.org/I46597724"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052597497","display_name":"Agnieszka Szmur\u0142o","orcid":"https://orcid.org/0000-0002-9192-7420"},"institutions":[{"id":"https://openalex.org/I108403487","display_name":"Warsaw University of Technology","ror":"https://ror.org/00y0xnp53","country_code":"PL","type":"education","lineage":["https://openalex.org/I108403487"]},{"id":"https://openalex.org/I4210087266","display_name":"Institute of Computer Science","ror":"https://ror.org/003fvp964","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210087266","https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Agnieszka Szmur\u0142o","raw_affiliation_strings":["Institute of Computer Science, Warsaw University of Technology, Warsaw, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, Warsaw University of Technology, Warsaw, Poland","institution_ids":["https://openalex.org/I108403487","https://openalex.org/I4210087266"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042081656","display_name":"Kacper St\u0119pie\u0144","orcid":null},"institutions":[{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Kacper St\u0119pie\u0144","raw_affiliation_strings":["Department of Computer Science, Poznan University of Technology, Pozna\u0144, Poland"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Poznan University of Technology, Pozna\u0144, Poland","institution_ids":["https://openalex.org/I46597724"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045179172","display_name":"Mateusz Borowiak","orcid":null},"institutions":[{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Mateusz Borowiak","raw_affiliation_strings":["Department of Computer Science, Poznan University of Technology, Pozna\u0144, Poland"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Poznan University of Technology, Pozna\u0144, Poland","institution_ids":["https://openalex.org/I46597724"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072123349","display_name":"Micha\u0142 Okoniewski","orcid":"https://orcid.org/0000-0003-4722-4506"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Micha\u0142 Okoniewski","raw_affiliation_strings":["Scientific IT Services, ETH Zurich, Z\u00fcrich, Switzerland"],"affiliations":[{"raw_affiliation_string":"Scientific IT Services, ETH Zurich, Z\u00fcrich, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079290300","display_name":"Tomasz Gambin","orcid":"https://orcid.org/0000-0002-0941-4571"},"institutions":[{"id":"https://openalex.org/I4210087266","display_name":"Institute of Computer Science","ror":"https://ror.org/003fvp964","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210087266","https://openalex.org/I99542240"]},{"id":"https://openalex.org/I108403487","display_name":"Warsaw University of Technology","ror":"https://ror.org/00y0xnp53","country_code":"PL","type":"education","lineage":["https://openalex.org/I108403487"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Tomasz Gambin","raw_affiliation_strings":["Institute of Computer Science, Warsaw University of Technology, Warsaw, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, Warsaw University of Technology, Warsaw, Poland","institution_ids":["https://openalex.org/I108403487","https://openalex.org/I4210087266"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5079290300"],"corresponding_institution_ids":["https://openalex.org/I108403487","https://openalex.org/I4210087266"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.2799,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.58074256,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"35","issue":"12","first_page":"2156","last_page":"2158"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9822999835014343,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8283724188804626},{"id":"https://openalex.org/keywords/spark","display_name":"SPARK (programming language)","score":0.7890238761901855},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.703662633895874},{"id":"https://openalex.org/keywords/sql","display_name":"SQL","score":0.6724165678024292},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.5090352892875671},{"id":"https://openalex.org/keywords/data-processing","display_name":"Data processing","score":0.4835216999053955},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.39058730006217957},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3211630582809448},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2819746732711792}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8283724188804626},{"id":"https://openalex.org/C2781215313","wikidata":"https://www.wikidata.org/wiki/Q3493345","display_name":"SPARK (programming language)","level":2,"score":0.7890238761901855},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.703662633895874},{"id":"https://openalex.org/C510870499","wikidata":"https://www.wikidata.org/wiki/Q47607","display_name":"SQL","level":2,"score":0.6724165678024292},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.5090352892875671},{"id":"https://openalex.org/C138827492","wikidata":"https://www.wikidata.org/wiki/Q6661985","display_name":"Data processing","level":2,"score":0.4835216999053955},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.39058730006217957},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3211630582809448},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2819746732711792}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bty940","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty940","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30428005","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30428005","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W2099807884","https://openalex.org/W2108234281","https://openalex.org/W2131478115","https://openalex.org/W2138207763","https://openalex.org/W2142434250","https://openalex.org/W2142680014","https://openalex.org/W2283262782","https://openalex.org/W2752573522","https://openalex.org/W2771381340","https://openalex.org/W3145128584"],"related_works":["https://openalex.org/W2766461310","https://openalex.org/W4247566972","https://openalex.org/W4388692845","https://openalex.org/W3202731209","https://openalex.org/W3211874991","https://openalex.org/W2558523485","https://openalex.org/W4308507533","https://openalex.org/W2407107767","https://openalex.org/W2901787049","https://openalex.org/W4379407450"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":4},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-03-05T09:29:38.588285","created_date":"2025-10-10T00:00:00"}
