{"id":"https://openalex.org/W2899889813","doi":"https://doi.org/10.1093/bioinformatics/bty924","title":"Improved inference of intermolecular contacts through protein\u2013protein interaction prediction using coevolutionary analysis","display_name":"Improved inference of intermolecular contacts through protein\u2013protein interaction prediction using coevolutionary analysis","publication_year":2018,"publication_date":"2018-11-05","ids":{"openalex":"https://openalex.org/W2899889813","doi":"https://doi.org/10.1093/bioinformatics/bty924","mag":"2899889813","pmid":"https://pubmed.ncbi.nlm.nih.gov/30398547"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty924","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty924","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://research.wur.nl/en/publications/improved-inference-of-intermolecular-contacts-through-proteinprot","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011698965","display_name":"Miguel Correa Marrero","orcid":"https://orcid.org/0000-0002-3840-3273"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Miguel Correa Marrero","raw_affiliation_strings":["Bioinformatics Group, Department of Plant Sciences"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Department of Plant Sciences","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066679730","display_name":"Richard G. H. Immink","orcid":"https://orcid.org/0000-0002-0182-4138"},"institutions":[{"id":"https://openalex.org/I170203145","display_name":"MRC Laboratory of Molecular Biology","ror":"https://ror.org/00tw3jy02","country_code":"GB","type":"facility","lineage":["https://openalex.org/I170203145","https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Richard G H Immink","raw_affiliation_strings":["Bioscience, Wageningen Plant Research","Laboratory of Molecular Biology, Department of Plant Sciences"],"affiliations":[{"raw_affiliation_string":"Bioscience, Wageningen Plant Research","institution_ids":[]},{"raw_affiliation_string":"Laboratory of Molecular Biology, Department of Plant Sciences","institution_ids":["https://openalex.org/I170203145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080533789","display_name":"Dick de Ridder","orcid":"https://orcid.org/0000-0002-4944-4310"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dick de Ridder","raw_affiliation_strings":["Bioinformatics Group, Department of Plant Sciences"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Department of Plant Sciences","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015936316","display_name":"Aalt D. J. van Dijk","orcid":"https://orcid.org/0000-0002-8872-5123"},"institutions":[{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Aalt D J van Dijk","raw_affiliation_strings":["Bioinformatics Group, Department of Plant Sciences","Biometris, Department of Plant Sciences, Wageningen University & Research, Wageningen PB, The Netherlands","Bioscience, Wageningen Plant Research"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Department of Plant Sciences","institution_ids":[]},{"raw_affiliation_string":"Biometris, Department of Plant Sciences, Wageningen University & Research, Wageningen PB, The Netherlands","institution_ids":["https://openalex.org/I913481162"]},{"raw_affiliation_string":"Bioscience, Wageningen Plant Research","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5015936316"],"corresponding_institution_ids":["https://openalex.org/I913481162"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.9273,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.74864606,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"35","issue":"12","first_page":"2036","last_page":"2042"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7837173342704773},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.5505929589271545},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5485029816627502},{"id":"https://openalex.org/keywords/intermolecular-force","display_name":"Intermolecular force","score":0.42931535840034485},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37196075916290283},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3456568419933319},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24920359253883362},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1946687400341034},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.16708576679229736}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7837173342704773},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.5505929589271545},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5485029816627502},{"id":"https://openalex.org/C166950319","wikidata":"https://www.wikidata.org/wiki/Q245031","display_name":"Intermolecular force","level":3,"score":0.42931535840034485},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37196075916290283},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3456568419933319},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24920359253883362},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1946687400341034},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.16708576679229736},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bty924","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty924","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30398547","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30398547","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:library.wur.nl:wurpubs/545924","is_oa":true,"landing_page_url":"https://research.wur.nl/en/publications/improved-inference-of-intermolecular-contacts-through-proteinprot","pdf_url":null,"source":{"id":"https://openalex.org/S4210201231","display_name":"Socio-Environmental Systems Modeling","issn_l":"2663-3027","issn":["2663-3027"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"ISSN: 1367-4803","raw_type":"Article/Letter to editor"}],"best_oa_location":{"id":"pmh:oai:library.wur.nl:wurpubs/545924","is_oa":true,"landing_page_url":"https://research.wur.nl/en/publications/improved-inference-of-intermolecular-contacts-through-proteinprot","pdf_url":null,"source":{"id":"https://openalex.org/S4210201231","display_name":"Socio-Environmental Systems Modeling","issn_l":"2663-3027","issn":["2663-3027"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"ISSN: 1367-4803","raw_type":"Article/Letter to editor"},"sustainable_development_goals":[{"score":0.7300000190734863,"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":45,"referenced_works":["https://openalex.org/W1965021143","https://openalex.org/W1982267716","https://openalex.org/W1986347357","https://openalex.org/W2014173702","https://openalex.org/W2027794214","https://openalex.org/W2048310584","https://openalex.org/W2049633694","https://openalex.org/W2053061982","https://openalex.org/W2065921821","https://openalex.org/W2074570440","https://openalex.org/W2096915408","https://openalex.org/W2101234009","https://openalex.org/W2107676974","https://openalex.org/W2107867854","https://openalex.org/W2110509245","https://openalex.org/W2112322820","https://openalex.org/W2113358325","https://openalex.org/W2116612021","https://openalex.org/W2117526623","https://openalex.org/W2127322768","https://openalex.org/W2134587758","https://openalex.org/W2137566700","https://openalex.org/W2138551420","https://openalex.org/W2150892841","https://openalex.org/W2157106797","https://openalex.org/W2160378127","https://openalex.org/W2166701319","https://openalex.org/W2167680767","https://openalex.org/W2168175751","https://openalex.org/W2169478909","https://openalex.org/W2176135968","https://openalex.org/W2224056471","https://openalex.org/W2342766640","https://openalex.org/W2378867027","https://openalex.org/W2559132852","https://openalex.org/W2593619857","https://openalex.org/W2605518777","https://openalex.org/W2737584047","https://openalex.org/W2763876266","https://openalex.org/W2765742208","https://openalex.org/W2804651207","https://openalex.org/W2949425512","https://openalex.org/W2990138404","https://openalex.org/W6675354045","https://openalex.org/W6676960186"],"related_works":["https://openalex.org/W1497930170","https://openalex.org/W2099982459","https://openalex.org/W2109298101","https://openalex.org/W2007507741","https://openalex.org/W2159860826","https://openalex.org/W3192210502","https://openalex.org/W1981737222","https://openalex.org/W1569394480","https://openalex.org/W4390876228","https://openalex.org/W1998222399"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}