{"id":"https://openalex.org/W2899576016","doi":"https://doi.org/10.1093/bioinformatics/bty912","title":"Set of approaches based on 3D structure and position specific-scoring matrix for predicting DNA-binding proteins","display_name":"Set of approaches based on 3D structure and position specific-scoring matrix for predicting DNA-binding proteins","publication_year":2018,"publication_date":"2018-11-01","ids":{"openalex":"https://openalex.org/W2899576016","doi":"https://doi.org/10.1093/bioinformatics/bty912","mag":"2899576016","pmid":"https://pubmed.ncbi.nlm.nih.gov/30395157"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty912","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty912","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007729428","display_name":"Loris Nanni","orcid":"https://orcid.org/0000-0002-3502-7209"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Loris Nanni","raw_affiliation_strings":["Department of Information Engineering, University of Padova, Padova, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Information Engineering, University of Padova, Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062894420","display_name":"Sheryl Brahnam","orcid":"https://orcid.org/0000-0001-7664-6930"},"institutions":[{"id":"https://openalex.org/I119942284","display_name":"Missouri State University","ror":"https://ror.org/01d2sez20","country_code":"US","type":"education","lineage":["https://openalex.org/I119942284"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sheryl Brahnam","raw_affiliation_strings":["Department of Computer Information Systems, Missouri State University, Springfield, MO, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Information Systems, Missouri State University, Springfield, MO, USA","institution_ids":["https://openalex.org/I119942284"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5007729428"],"corresponding_institution_ids":["https://openalex.org/I138689650"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.8378,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.73154057,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"35","issue":"11","first_page":"1844","last_page":"1851"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6279982328414917},{"id":"https://openalex.org/keywords/position","display_name":"Position (finance)","score":0.5846519470214844},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5523350238800049},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.5514357089996338},{"id":"https://openalex.org/keywords/matrix","display_name":"Matrix (chemical analysis)","score":0.49416735768318176},{"id":"https://openalex.org/keywords/dna-binding-protein","display_name":"DNA-binding protein","score":0.4683228135108948},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4572150707244873},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.26657575368881226},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2517666220664978},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2516254186630249},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13467496633529663},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07871231436729431},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.07060852646827698}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6279982328414917},{"id":"https://openalex.org/C198082294","wikidata":"https://www.wikidata.org/wiki/Q3399648","display_name":"Position (finance)","level":2,"score":0.5846519470214844},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5523350238800049},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.5514357089996338},{"id":"https://openalex.org/C106487976","wikidata":"https://www.wikidata.org/wiki/Q685816","display_name":"Matrix (chemical analysis)","level":2,"score":0.49416735768318176},{"id":"https://openalex.org/C94966510","wikidata":"https://www.wikidata.org/wiki/Q2252764","display_name":"DNA-binding protein","level":4,"score":0.4683228135108948},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4572150707244873},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.26657575368881226},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2517666220664978},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2516254186630249},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13467496633529663},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07871231436729431},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.07060852646827698},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056510","descriptor_name":"Position-Specific Scoring Matrices","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056510","descriptor_name":"Position-Specific Scoring Matrices","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056510","descriptor_name":"Position-Specific Scoring Matrices","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bty912","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty912","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30395157","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30395157","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:bearworks.missouristate.edu:articles-cob-1442","is_oa":false,"landing_page_url":"https://bearworks.missouristate.edu/articles-cob/443","pdf_url":null,"source":{"id":"https://openalex.org/S4377196450","display_name":"BearWorks (Missouri State University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I119942284","host_organization_name":"Missouri State University","host_organization_lineage":["https://openalex.org/I119942284"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"College of Business","raw_type":"text"},{"id":"pmh:oai:www.research.unipd.it:11577/3287885","is_oa":false,"landing_page_url":"http://hdl.handle.net/11577/3287885","pdf_url":null,"source":{"id":"https://openalex.org/S4306402547","display_name":"Padua Research Archive (University of Padova)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":74,"referenced_works":["https://openalex.org/W1496604422","https://openalex.org/W1521843029","https://openalex.org/W1821507858","https://openalex.org/W1969051510","https://openalex.org/W1976133477","https://openalex.org/W1978172542","https://openalex.org/W1980897319","https://openalex.org/W1981091069","https://openalex.org/W1986104731","https://openalex.org/W1992116297","https://openalex.org/W1992991025","https://openalex.org/W2001101658","https://openalex.org/W2002813366","https://openalex.org/W2008671051","https://openalex.org/W2009470087","https://openalex.org/W2010688088","https://openalex.org/W2014731953","https://openalex.org/W2016579482","https://openalex.org/W2029690995","https://openalex.org/W2030922238","https://openalex.org/W2034070267","https://openalex.org/W2038020595","https://openalex.org/W2053979203","https://openalex.org/W2056052642","https://openalex.org/W2059971420","https://openalex.org/W2063231296","https://openalex.org/W2066363861","https://openalex.org/W2070980386","https://openalex.org/W2079031047","https://openalex.org/W2088117005","https://openalex.org/W2090557416","https://openalex.org/W2094764962","https://openalex.org/W2096326632","https://openalex.org/W2102551551","https://openalex.org/W2114042714","https://openalex.org/W2116089841","https://openalex.org/W2125449461","https://openalex.org/W2125463451","https://openalex.org/W2130258210","https://openalex.org/W2138769522","https://openalex.org/W2145957695","https://openalex.org/W2147141800","https://openalex.org/W2147580225","https://openalex.org/W2156690214","https://openalex.org/W2157494358","https://openalex.org/W2158714788","https://openalex.org/W2160257187","https://openalex.org/W2163352848","https://openalex.org/W2173801226","https://openalex.org/W2186518338","https://openalex.org/W2196507012","https://openalex.org/W2315928616","https://openalex.org/W2322691988","https://openalex.org/W2421133685","https://openalex.org/W2470414691","https://openalex.org/W2533142962","https://openalex.org/W2571299862","https://openalex.org/W2592144725","https://openalex.org/W2608035254","https://openalex.org/W2748005921","https://openalex.org/W2757522837","https://openalex.org/W2766430481","https://openalex.org/W2780936345","https://openalex.org/W2793434846","https://openalex.org/W2794024218","https://openalex.org/W2804549231","https://openalex.org/W2916704833","https://openalex.org/W3007748498","https://openalex.org/W3014001879","https://openalex.org/W6675542695","https://openalex.org/W6678635035","https://openalex.org/W6717823287","https://openalex.org/W6736662874","https://openalex.org/W6747408139"],"related_works":["https://openalex.org/W2385118824","https://openalex.org/W2359476137","https://openalex.org/W2362165903","https://openalex.org/W2575294667","https://openalex.org/W2378962668","https://openalex.org/W2760239433","https://openalex.org/W2358910850","https://openalex.org/W4221119480","https://openalex.org/W2022959425","https://openalex.org/W2054945984"],"abstract_inverted_index":{"The":[0],"MATLAB":[1],"code":[2],"for":[3],"replicating":[4],"the":[5],"experiments":[6],"presented":[7],"in":[8],"this":[9],"paper":[10],"is":[11],"available":[12],"at":[13],"https://github.com/LorisNanni.":[14]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":2}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
