{"id":"https://openalex.org/W2905285619","doi":"https://doi.org/10.1093/bioinformatics/bty900","title":"BatchI: Batch effect Identification in high-throughput screening data using a dynamic programming algorithm","display_name":"BatchI: Batch effect Identification in high-throughput screening data using a dynamic programming algorithm","publication_year":2018,"publication_date":"2018-10-24","ids":{"openalex":"https://openalex.org/W2905285619","doi":"https://doi.org/10.1093/bioinformatics/bty900","mag":"2905285619","pmid":"https://pubmed.ncbi.nlm.nih.gov/30357412"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty900","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty900","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/11/1885/48935163/bioinformatics_35_11_1885.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/11/1885/48935163/bioinformatics_35_11_1885.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013071897","display_name":"Anna Papie\u017c","orcid":"https://orcid.org/0000-0003-0179-1302"},"institutions":[{"id":"https://openalex.org/I119004910","display_name":"Silesian University of Technology","ror":"https://ror.org/02dyjk442","country_code":"PL","type":"education","lineage":["https://openalex.org/I119004910"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Anna Papiez","raw_affiliation_strings":["Institute of Automatic Control, Silesian University of Technology, Gliwice, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Automatic Control, Silesian University of Technology, Gliwice, Poland","institution_ids":["https://openalex.org/I119004910"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087940597","display_name":"Micha\u0142 Marczyk","orcid":"https://orcid.org/0000-0003-2508-5736"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]},{"id":"https://openalex.org/I119004910","display_name":"Silesian University of Technology","ror":"https://ror.org/02dyjk442","country_code":"PL","type":"education","lineage":["https://openalex.org/I119004910"]}],"countries":["PL","US"],"is_corresponding":false,"raw_author_name":"Michal Marczyk","raw_affiliation_strings":["Department of Internal Medicine, Yale School of Medicine, Yale University, New Haven, CT, USA","Institute of Automatic Control, Silesian University of Technology, Gliwice, Poland"],"affiliations":[{"raw_affiliation_string":"Department of Internal Medicine, Yale School of Medicine, Yale University, New Haven, CT, USA","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"Institute of Automatic Control, Silesian University of Technology, Gliwice, Poland","institution_ids":["https://openalex.org/I119004910"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027451254","display_name":"Joanna Pola\u0144ska","orcid":"https://orcid.org/0000-0001-8004-9864"},"institutions":[{"id":"https://openalex.org/I119004910","display_name":"Silesian University of Technology","ror":"https://ror.org/02dyjk442","country_code":"PL","type":"education","lineage":["https://openalex.org/I119004910"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Joanna Polanska","raw_affiliation_strings":["Institute of Automatic Control, Silesian University of Technology, Gliwice, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Automatic Control, Silesian University of Technology, Gliwice, Poland","institution_ids":["https://openalex.org/I119004910"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062290220","display_name":"Andrzej Pola\u0144ski","orcid":"https://orcid.org/0000-0002-1793-9546"},"institutions":[{"id":"https://openalex.org/I119004910","display_name":"Silesian University of Technology","ror":"https://ror.org/02dyjk442","country_code":"PL","type":"education","lineage":["https://openalex.org/I119004910"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Andrzej Polanski","raw_affiliation_strings":["Institute of Informatics, Silesian University of Technology, Gliwice, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Informatics, Silesian University of Technology, Gliwice, Poland","institution_ids":["https://openalex.org/I119004910"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5027451254"],"corresponding_institution_ids":["https://openalex.org/I119004910"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.0239,"has_fulltext":true,"cited_by_count":23,"citation_normalized_percentile":{"value":0.76752908,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"35","issue":"11","first_page":"1885","last_page":"1892"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6996728181838989},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6380350589752197},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.5935096740722656},{"id":"https://openalex.org/keywords/batch-processing","display_name":"Batch processing","score":0.5708274245262146},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5567945241928101},{"id":"https://openalex.org/keywords/a-priori-and-a-posteriori","display_name":"A priori and a posteriori","score":0.5304640531539917},{"id":"https://openalex.org/keywords/dynamic-programming","display_name":"Dynamic programming","score":0.5237224698066711},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.5110582113265991},{"id":"https://openalex.org/keywords/autocorrelation","display_name":"Autocorrelation","score":0.4716165363788605},{"id":"https://openalex.org/keywords/sort","display_name":"sort","score":0.46884194016456604},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4687996506690979},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.20569774508476257},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.1734175980091095},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.09064364433288574}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6996728181838989},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6380350589752197},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.5935096740722656},{"id":"https://openalex.org/C172658912","wikidata":"https://www.wikidata.org/wiki/Q661613","display_name":"Batch processing","level":2,"score":0.5708274245262146},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5567945241928101},{"id":"https://openalex.org/C75553542","wikidata":"https://www.wikidata.org/wiki/Q178161","display_name":"A priori and a posteriori","level":2,"score":0.5304640531539917},{"id":"https://openalex.org/C37404715","wikidata":"https://www.wikidata.org/wiki/Q380679","display_name":"Dynamic programming","level":2,"score":0.5237224698066711},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.5110582113265991},{"id":"https://openalex.org/C5297727","wikidata":"https://www.wikidata.org/wiki/Q786970","display_name":"Autocorrelation","level":2,"score":0.4716165363788605},{"id":"https://openalex.org/C88548561","wikidata":"https://www.wikidata.org/wiki/Q347599","display_name":"sort","level":2,"score":0.46884194016456604},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4687996506690979},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.20569774508476257},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.1734175980091095},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.09064364433288574},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bty900","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty900","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/11/1885/48935163/bioinformatics_35_11_1885.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30357412","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30357412","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:5537186","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6546123","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty900","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty900","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/11/1885/48935163/bioinformatics_35_11_1885.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7354243348","display_name":null,"funder_award_id":"BK-200/RAU1/2018/8","funder_id":"https://openalex.org/F4320324727","funder_display_name":"Silesian University of Technology"},{"id":"https://openalex.org/G7867345188","display_name":null,"funder_award_id":"POIG.02.03.01-24-099/13","funder_id":"https://openalex.org/F4320324727","funder_display_name":"Silesian University of Technology"}],"funders":[{"id":"https://openalex.org/F4320324727","display_name":"Silesian University of Technology","ror":"https://ror.org/02dyjk442"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2905285619.pdf","grobid_xml":"https://content.openalex.org/works/W2905285619.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1757407923","https://openalex.org/W1957776961","https://openalex.org/W1964904043","https://openalex.org/W1975946664","https://openalex.org/W1983588054","https://openalex.org/W1986849266","https://openalex.org/W1987869189","https://openalex.org/W1995070233","https://openalex.org/W2024908306","https://openalex.org/W2034712686","https://openalex.org/W2039010203","https://openalex.org/W2047717400","https://openalex.org/W2049446938","https://openalex.org/W2084775350","https://openalex.org/W2096192437","https://openalex.org/W2097880821","https://openalex.org/W2107665951","https://openalex.org/W2108488321","https://openalex.org/W2108947463","https://openalex.org/W2112248044","https://openalex.org/W2113676124","https://openalex.org/W2116650193","https://openalex.org/W2118521406","https://openalex.org/W2129905273","https://openalex.org/W2135714004","https://openalex.org/W2137499573","https://openalex.org/W2138551378","https://openalex.org/W2139345901","https://openalex.org/W2148541040","https://openalex.org/W2150542002","https://openalex.org/W2161036742","https://openalex.org/W2163563958","https://openalex.org/W2169456326","https://openalex.org/W2170989872","https://openalex.org/W2506717766","https://openalex.org/W2512452276","https://openalex.org/W2761802050","https://openalex.org/W3098618426","https://openalex.org/W6641364557","https://openalex.org/W6676789370"],"related_works":["https://openalex.org/W747394405","https://openalex.org/W1987236514","https://openalex.org/W174653542","https://openalex.org/W2381153750","https://openalex.org/W2361805396","https://openalex.org/W2088220880","https://openalex.org/W2972254340","https://openalex.org/W2953716828","https://openalex.org/W2041235277","https://openalex.org/W2904857019"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}