{"id":"https://openalex.org/W2897877332","doi":"https://doi.org/10.1093/bioinformatics/bty853","title":"PlateDesigner: a web-based application for the design of microplate experiments","display_name":"PlateDesigner: a web-based application for the design of microplate experiments","publication_year":2018,"publication_date":"2018-10-09","ids":{"openalex":"https://openalex.org/W2897877332","doi":"https://doi.org/10.1093/bioinformatics/bty853","mag":"2897877332","pmid":"https://pubmed.ncbi.nlm.nih.gov/30304481"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty853","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty853","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/9/1605/48941867/bioinformatics_35_9_1605.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/9/1605/48941867/bioinformatics_35_9_1605.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051648553","display_name":"Maria Suprun","orcid":"https://orcid.org/0000-0001-9161-4021"},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maria Suprun","raw_affiliation_strings":["Department of Pediatrics, Allergy and Immunology, Icahn School of Medicine at Mount Sinai, New York, NY, USA"],"raw_orcid":"https://orcid.org/0000-0001-9161-4021","affiliations":[{"raw_affiliation_string":"Department of Pediatrics, Allergy and Immunology, Icahn School of Medicine at Mount Sinai, New York, NY, USA","institution_ids":["https://openalex.org/I98704320"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074081568","display_name":"Mayte Su\u00e1rez\u2010Fari\u00f1as","orcid":"https://orcid.org/0000-0001-8712-3553"},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mayte Su\u00e1rez-Fari\u00f1as","raw_affiliation_strings":["Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA","Department of Population Health Science and Policy, Icahn School of Medicine at Mount Sinai, New York, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA","institution_ids":["https://openalex.org/I98704320"]},{"raw_affiliation_string":"Department of Population Health Science and Policy, Icahn School of Medicine at Mount Sinai, New York, NY, USA","institution_ids":["https://openalex.org/I98704320"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5074081568"],"corresponding_institution_ids":["https://openalex.org/I98704320"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.0207,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.76456911,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"35","issue":"9","first_page":"1605","last_page":"1607"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12867","display_name":"Advanced Biosensing Techniques and Applications","score":0.1103999987244606,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12867","display_name":"Advanced Biosensing Techniques and Applications","score":0.1103999987244606,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12281","display_name":"Animal testing and alternatives","score":0.10100000351667404,"subfield":{"id":"https://openalex.org/subfields/3404","display_name":"Small Animals"},"field":{"id":"https://openalex.org/fields/34","display_name":"Veterinary"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.06469999998807907,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.635558009147644},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.44902125000953674},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.41149210929870605},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3859228193759918},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.32605451345443726},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.16762211918830872}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.635558009147644},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.44902125000953674},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.41149210929870605},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3859228193759918},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.32605451345443726},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.16762211918830872}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bty853","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty853","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/9/1605/48941867/bioinformatics_35_9_1605.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30304481","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30304481","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6821189","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6821189","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty853","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty853","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/9/1605/48941867/bioinformatics_35_9_1605.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5600000023841858,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G6719900742","display_name":null,"funder_award_id":"UL1 TR001433","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G7310101195","display_name":null,"funder_award_id":"T32 GM062754","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2897877332.pdf","grobid_xml":"https://content.openalex.org/works/W2897877332.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1588943321","https://openalex.org/W1995070233","https://openalex.org/W2001008748","https://openalex.org/W2063641249","https://openalex.org/W2069976363","https://openalex.org/W2096192437","https://openalex.org/W2099079147","https://openalex.org/W2107665951","https://openalex.org/W2113629984","https://openalex.org/W2118755992","https://openalex.org/W2125419286","https://openalex.org/W2139345901","https://openalex.org/W2144994753","https://openalex.org/W2169353806","https://openalex.org/W2343634752","https://openalex.org/W2412515166","https://openalex.org/W2750588340","https://openalex.org/W4251928238","https://openalex.org/W6714788840"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"SUMMARY:":[0],"In":[1,31],"biological":[2,18,113],"assays,":[3,40],"systematic":[4],"variability,":[5],"known":[6],"as":[7,36,107],"a":[8,26,137],"batch":[9],"effect,":[10],"can":[11,52,133],"often":[12],"confound":[13],"the":[14,58,67,75,87,99,103,111,117,131,164,169],"effects":[15,51],"of":[16,28,66,102,119,139,166,172],"true":[17],"conditions":[19],"and":[20,47,115,130,141,147,159],"has":[21],"been":[22],"well":[23],"documented":[24],"for":[25,56,94],"variety":[27,138],"high-throughput":[29],"technologies.":[30],"microplate-based":[32],"multiplex":[33],"experiments,":[34,96],"such":[35,106],"Luminex":[37],"or":[38],"OLINK":[39],"researchers":[41],"need":[42],"to":[43],"consider":[44],"both":[45],"position":[46],"plate":[48],"effects.":[49],"Those":[50],"be":[53,134],"easily":[54,142],"accounted":[55],"if":[57],"experiments":[59],"are":[60,122],"properly":[61],"designed,":[62],"which":[63],"includes":[64],"randomization":[65,78,93],"samples":[68,109],"across":[69],"multiple":[70,83],"experimental":[71,104,120],"runs.":[72],"However,":[73],"doing":[74],"ad":[76],"hoc":[77],"becomes":[79],"challenging":[80],"when":[81],"handling":[82],"samples.":[84],"PlateDesigner":[85,127,154],"is":[86,128,155,160,179],"first":[88],"web-based":[89],"application":[90,178],"that":[91,98],"provides":[92],"microplate":[95,145],"ensuring":[97],"main":[100],"principles":[101],"design,":[105],"grouping":[108],"from":[110],"same":[112],"units":[114],"balancing":[116],"distribution":[118],"conditions,":[121],"applied.":[123],"Creating":[124],"randomizations":[125],"with":[126,144],"simple":[129],"results":[132],"exported":[135],"in":[136,157],"formats,":[140],"integrated":[143],"readers":[146],"statistical":[148],"analysis":[149],"software.":[150],"AVAILABILITY":[151],"AND":[152],"IMPLEMENTATION:":[153],"written":[156],"R/Shiny":[158],"hosted":[161],"online":[162],"by":[163],"Center":[165],"Biostatistics":[167],"at":[168,174,182],"Icahn":[170],"School":[171],"Medicine":[173],"Mount":[175],"Sinai.":[176],"This":[177],"freely":[180],"available":[181],"platedesigner.net.":[183]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":1}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
