{"id":"https://openalex.org/W2897967970","doi":"https://doi.org/10.1093/bioinformatics/bty843","title":"QuagmiR: a cloud-based application for isomiR big data analytics","display_name":"QuagmiR: a cloud-based application for isomiR big data analytics","publication_year":2018,"publication_date":"2018-10-05","ids":{"openalex":"https://openalex.org/W2897967970","doi":"https://doi.org/10.1093/bioinformatics/bty843","mag":"2897967970","pmid":"https://pubmed.ncbi.nlm.nih.gov/30295744"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty843","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty843","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/9/1576/48940782/bioinformatics_35_9_1576.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/9/1576/48940782/bioinformatics_35_9_1576.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015538662","display_name":"Xavier Bofill\u2010De Ros","orcid":"https://orcid.org/0000-0002-1630-0652"},"institutions":[{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I4210149717","display_name":"Center for Cancer Research","ror":"https://ror.org/05bjen692","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884","https://openalex.org/I4210149717"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xavier Bofill-De Ros","raw_affiliation_strings":["RNA Mediated Gene Regulation Section, RNA Biology Laboratory, Center for Cancer Research, National Cancer Institute, Frederick, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RNA Mediated Gene Regulation Section, RNA Biology Laboratory, Center for Cancer Research, National Cancer Institute, Frederick, MD, USA","institution_ids":["https://openalex.org/I4210140884","https://openalex.org/I4210149717"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100350901","display_name":"Kevin Chen","orcid":"https://orcid.org/0000-0003-2873-5810"},"institutions":[{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I4210149717","display_name":"Center for Cancer Research","ror":"https://ror.org/05bjen692","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884","https://openalex.org/I4210149717"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kevin Chen","raw_affiliation_strings":["RNA Mediated Gene Regulation Section, RNA Biology Laboratory, Center for Cancer Research, National Cancer Institute, Frederick, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RNA Mediated Gene Regulation Section, RNA Biology Laboratory, Center for Cancer Research, National Cancer Institute, Frederick, MD, USA","institution_ids":["https://openalex.org/I4210140884","https://openalex.org/I4210149717"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083470527","display_name":"Susanna Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I4210149717","display_name":"Center for Cancer Research","ror":"https://ror.org/05bjen692","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884","https://openalex.org/I4210149717"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Susanna Chen","raw_affiliation_strings":["RNA Mediated Gene Regulation Section, RNA Biology Laboratory, Center for Cancer Research, National Cancer Institute, Frederick, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RNA Mediated Gene Regulation Section, RNA Biology Laboratory, Center for Cancer Research, National Cancer Institute, Frederick, MD, USA","institution_ids":["https://openalex.org/I4210140884","https://openalex.org/I4210149717"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036883162","display_name":"Nikola Tesic","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119359","display_name":"Seven Bridges Genomics (United States)","ror":"https://ror.org/02r7ybh06","country_code":"US","type":"company","lineage":["https://openalex.org/I4210119359"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nikola Tesic","raw_affiliation_strings":["Seven Bridges Genomics Inc., Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Seven Bridges Genomics Inc., Cambridge, MA, USA","institution_ids":["https://openalex.org/I4210119359"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102313852","display_name":"Dusan Randjelovic","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119359","display_name":"Seven Bridges Genomics (United States)","ror":"https://ror.org/02r7ybh06","country_code":"US","type":"company","lineage":["https://openalex.org/I4210119359"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dusan Randjelovic","raw_affiliation_strings":["Seven Bridges Genomics Inc., Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Seven Bridges Genomics Inc., Cambridge, MA, USA","institution_ids":["https://openalex.org/I4210119359"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055030085","display_name":"Nikola Skundric","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119359","display_name":"Seven Bridges Genomics (United States)","ror":"https://ror.org/02r7ybh06","country_code":"US","type":"company","lineage":["https://openalex.org/I4210119359"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nikola Skundric","raw_affiliation_strings":["Seven Bridges Genomics Inc., Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Seven Bridges Genomics Inc., Cambridge, MA, USA","institution_ids":["https://openalex.org/I4210119359"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077083016","display_name":"Svetozar Nesic","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119359","display_name":"Seven Bridges Genomics (United States)","ror":"https://ror.org/02r7ybh06","country_code":"US","type":"company","lineage":["https://openalex.org/I4210119359"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Svetozar Nesic","raw_affiliation_strings":["Seven Bridges Genomics Inc., Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Seven Bridges Genomics Inc., Cambridge, MA, USA","institution_ids":["https://openalex.org/I4210119359"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072461089","display_name":"Vojislav Varjacic","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119359","display_name":"Seven Bridges Genomics (United States)","ror":"https://ror.org/02r7ybh06","country_code":"US","type":"company","lineage":["https://openalex.org/I4210119359"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vojislav Varjacic","raw_affiliation_strings":["Seven Bridges Genomics Inc., Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Seven Bridges Genomics Inc., Cambridge, MA, USA","institution_ids":["https://openalex.org/I4210119359"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011120941","display_name":"Elizabeth H. Williams","orcid":"https://orcid.org/0000-0002-4665-1875"},"institutions":[{"id":"https://openalex.org/I4210119359","display_name":"Seven Bridges Genomics (United States)","ror":"https://ror.org/02r7ybh06","country_code":"US","type":"company","lineage":["https://openalex.org/I4210119359"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Elizabeth H Williams","raw_affiliation_strings":["Seven Bridges Genomics Inc., Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Seven Bridges Genomics Inc., Cambridge, MA, USA","institution_ids":["https://openalex.org/I4210119359"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107809194","display_name":"Raunaq Malhotra","orcid":"https://orcid.org/0000-0002-7253-850X"},"institutions":[{"id":"https://openalex.org/I4210119359","display_name":"Seven Bridges Genomics (United States)","ror":"https://ror.org/02r7ybh06","country_code":"US","type":"company","lineage":["https://openalex.org/I4210119359"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Raunaq Malhotra","raw_affiliation_strings":["Seven Bridges Genomics Inc., Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Seven Bridges Genomics Inc., Cambridge, MA, USA","institution_ids":["https://openalex.org/I4210119359"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101492442","display_name":"Minjie Jiang","orcid":"https://orcid.org/0000-0002-2905-2782"},"institutions":[{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I4210149717","display_name":"Center for Cancer Research","ror":"https://ror.org/05bjen692","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884","https://openalex.org/I4210149717"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Minjie Jiang","raw_affiliation_strings":["RNA Mediated Gene Regulation Section, RNA Biology Laboratory, Center for Cancer Research, National Cancer Institute, Frederick, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RNA Mediated Gene Regulation Section, RNA Biology Laboratory, Center for Cancer Research, National Cancer Institute, Frederick, MD, USA","institution_ids":["https://openalex.org/I4210140884","https://openalex.org/I4210149717"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036667288","display_name":"Shuo Gu","orcid":"https://orcid.org/0000-0002-7924-5363"},"institutions":[{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I4210149717","display_name":"Center for Cancer Research","ror":"https://ror.org/05bjen692","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884","https://openalex.org/I4210149717"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Shuo Gu","raw_affiliation_strings":["RNA Mediated Gene Regulation Section, RNA Biology Laboratory, Center for Cancer Research, National Cancer Institute, Frederick, MD, USA"],"raw_orcid":"https://orcid.org/0000-0002-7924-5363","affiliations":[{"raw_affiliation_string":"RNA Mediated Gene Regulation Section, RNA Biology Laboratory, Center for Cancer Research, National Cancer Institute, Frederick, MD, USA","institution_ids":["https://openalex.org/I4210140884","https://openalex.org/I4210149717"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5036667288"],"corresponding_institution_ids":["https://openalex.org/I4210140884","https://openalex.org/I4210149717"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.3603,"has_fulltext":true,"cited_by_count":29,"citation_normalized_percentile":{"value":0.78402685,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"35","issue":"9","first_page":"1576","last_page":"1578"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.7705523371696472},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7671148180961609},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.6735939383506775},{"id":"https://openalex.org/keywords/personalization","display_name":"Personalization","score":0.5731695890426636},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.46465152502059937},{"id":"https://openalex.org/keywords/analytics","display_name":"Analytics","score":0.42441269755363464},{"id":"https://openalex.org/keywords/server","display_name":"Server","score":0.42111143469810486},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.39794641733169556},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.321405291557312},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.30529528856277466},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.19495657086372375}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.7705523371696472},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7671148180961609},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.6735939383506775},{"id":"https://openalex.org/C183003079","wikidata":"https://www.wikidata.org/wiki/Q1000371","display_name":"Personalization","level":2,"score":0.5731695890426636},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.46465152502059937},{"id":"https://openalex.org/C79158427","wikidata":"https://www.wikidata.org/wiki/Q485396","display_name":"Analytics","level":2,"score":0.42441269755363464},{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.42111143469810486},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.39794641733169556},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.321405291557312},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.30529528856277466},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.19495657086372375},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077488","descriptor_name":"Data Science","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077488","descriptor_name":"Data Science","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077488","descriptor_name":"Data Science","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bty843","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty843","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/9/1576/48940782/bioinformatics_35_9_1576.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30295744","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30295744","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6499244","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6499244","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/df9cd353-d17a-4145-a778-95ca43340878","is_oa":false,"landing_page_url":"https://researchprofiles.ku.dk/da/publications/df9cd353-d17a-4145-a778-95ca43340878","pdf_url":null,"source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bofill De Ros , X 2019 , ' QuagmiR: a cloud-based application for isomiR big data analytics. ' , Bioinformatics (Oxford, England) . https://doi.org/10.1093/bioinformatics/bty843","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty843","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty843","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/9/1576/48940782/bioinformatics_35_9_1576.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1584997690","display_name":null,"funder_award_id":"17X146","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4258672507","display_name":null,"funder_award_id":"HHSN261201400008C","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5255084490","display_name":null,"funder_award_id":"HHSN261201400008C","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G6012682559","display_name":null,"funder_award_id":"HHSN261201500003I","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G8882569155","display_name":null,"funder_award_id":"HHSN261201500003I","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2897967970.pdf","grobid_xml":"https://content.openalex.org/works/W2897967970.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1454791104","https://openalex.org/W1989353561","https://openalex.org/W1993715176","https://openalex.org/W1997393600","https://openalex.org/W2004791359","https://openalex.org/W2006247279","https://openalex.org/W2022326327","https://openalex.org/W2026570544","https://openalex.org/W2077327925","https://openalex.org/W2081356513","https://openalex.org/W2089055162","https://openalex.org/W2105549148","https://openalex.org/W2130137303","https://openalex.org/W2130305733","https://openalex.org/W2133687564","https://openalex.org/W2146580193","https://openalex.org/W2147495091","https://openalex.org/W2169456326","https://openalex.org/W2171260596","https://openalex.org/W2180027813","https://openalex.org/W2335838865","https://openalex.org/W2418446696","https://openalex.org/W2765635284","https://openalex.org/W2951861059","https://openalex.org/W4211064852"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2341492732","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W3187193180","https://openalex.org/W106542691","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W4287027380","https://openalex.org/W1699080303"],"abstract_inverted_index":{"SUMMARY:":[0],"MicroRNAs":[1],"(miRNAs)":[2],"function":[3],"as":[4,102,104],"master":[5],"regulators":[6],"of":[7,53,60,111],"gene":[8],"expression.":[9],"Recent":[10],"studies":[11],"demonstrate":[12],"that":[13],"miRNA":[14],"isoforms":[15],"(isomiRs)":[16],"play":[17],"a":[18,41],"unique":[19],"role":[20],"in":[21,81],"cancer":[22],"development.":[23],"Here,":[24],"we":[25],"present":[26],"QuagmiR,":[27],"the":[28,49,61,69,96,112,125],"first":[29],"cloud-based":[30],"tool":[31,113],"to":[32,67],"analyze":[33],"isomiRs":[34],"from":[35,88,95],"next":[36],"generation":[37],"sequencing":[38],"data.":[39],"Using":[40],"novel":[42],"and":[43,51,64,83],"flexible":[44],"searching":[45],"algorithm":[46],"designed":[47],"for":[48,119],"detection":[50],"annotation":[52],"heterogeneous":[54],"isomiRs,":[55],"it":[56],"permits":[57],"extensive":[58],"customization":[59],"query":[62],"process":[63],"reference":[65],"databases":[66],"meet":[68],"user":[70],"'s":[71],"diverse":[72],"research":[73],"needs.":[74],"AVAILABILITY":[75],"AND":[76],"IMPLEMENTATION:":[77],"QuagmiR":[78,91],"is":[79],"written":[80],"Python":[82],"can":[84,92],"be":[85,93],"obtained":[86],"freely":[87],"GitHub":[89],"(https://github.com/Gu-Lab-RBL-NCI/QuagmiR).":[90],"run":[94],"command":[97],"line":[98],"on":[99,105],"local":[100],"machines,":[101],"well":[103],"high-performance":[106],"servers.":[107],"A":[108],"web-accessible":[109],"version":[110],"has":[114],"also":[115],"been":[116],"made":[117],"available":[118,140],"use":[120],"by":[121],"academic":[122],"researchers":[123],"through":[124],"National":[126],"Cancer":[127,131],"Institute-funded":[128],"Seven":[129],"Bridges":[130],"Genomics":[132],"Cloud":[133],"(https://cancergenomicscloud.org).":[134],"SUPPLEMENTARY":[135],"INFORMATION:":[136],"Supplementary":[137],"data":[138],"are":[139],"at":[141],"Bioinformatics":[142],"online.":[143]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":2}],"updated_date":"2026-06-25T06:16:34.145877","created_date":"2018-10-26T00:00:00"}
