{"id":"https://openalex.org/W2950130264","doi":"https://doi.org/10.1093/bioinformatics/bty819","title":"CINNA: an R/CRAN package to decipher Central Informative Nodes in Network Analysis","display_name":"CINNA: an R/CRAN package to decipher Central Informative Nodes in Network Analysis","publication_year":2018,"publication_date":"2018-09-18","ids":{"openalex":"https://openalex.org/W2950130264","doi":"https://doi.org/10.1093/bioinformatics/bty819","mag":"2950130264","pmid":"https://pubmed.ncbi.nlm.nih.gov/30239607"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty819","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty819","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102818301","display_name":"Minoo Ashtiani","orcid":"https://orcid.org/0000-0002-2853-363X"},"institutions":[{"id":"https://openalex.org/I4210088961","display_name":"Biotechnology Research Center","ror":"https://ror.org/013t96v18","country_code":"IR","type":"facility","lineage":["https://openalex.org/I163205636","https://openalex.org/I4210088961"]},{"id":"https://openalex.org/I1301411061","display_name":"Pasteur Institute of Iran","ror":"https://ror.org/00wqczk30","country_code":"IR","type":"facility","lineage":["https://openalex.org/I1301411061"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Minoo Ashtiani","raw_affiliation_strings":["Medical Biotechnology Department, Biotechnology Research Center, Pasteur Institute of Iran, Tehran, Iran"],"affiliations":[{"raw_affiliation_string":"Medical Biotechnology Department, Biotechnology Research Center, Pasteur Institute of Iran, Tehran, Iran","institution_ids":["https://openalex.org/I1301411061","https://openalex.org/I4210088961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046889449","display_name":"Mehdi Mirzaie","orcid":"https://orcid.org/0000-0003-4434-5118"},"institutions":[{"id":"https://openalex.org/I1516879","display_name":"Tarbiat Modares University","ror":"https://ror.org/03mwgfy56","country_code":"IR","type":"education","lineage":["https://openalex.org/I1516879"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Mehdi Mirzaie","raw_affiliation_strings":["Department of Applied Mathematics, Faculty of Mathematical Sciences, Tarbiat Modares University, Tehran, Iran"],"affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics, Faculty of Mathematical Sciences, Tarbiat Modares University, Tehran, Iran","institution_ids":["https://openalex.org/I1516879"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017969980","display_name":"Mohieddin Jafari","orcid":null},"institutions":[{"id":"https://openalex.org/I4210088961","display_name":"Biotechnology Research Center","ror":"https://ror.org/013t96v18","country_code":"IR","type":"facility","lineage":["https://openalex.org/I163205636","https://openalex.org/I4210088961"]},{"id":"https://openalex.org/I1301411061","display_name":"Pasteur Institute of Iran","ror":"https://ror.org/00wqczk30","country_code":"IR","type":"facility","lineage":["https://openalex.org/I1301411061"]},{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}],"countries":["FI","IR"],"is_corresponding":true,"raw_author_name":"Mohieddin Jafari","raw_affiliation_strings":["Institute for Molecular Medicine Finland (FIMM), Helsinki Institute of Life Science, University of Helsinki, Finland","Medical Biotechnology Department, Biotechnology Research Center, Pasteur Institute of Iran, Tehran, Iran"],"affiliations":[{"raw_affiliation_string":"Institute for Molecular Medicine Finland (FIMM), Helsinki Institute of Life Science, University of Helsinki, Finland","institution_ids":["https://openalex.org/I4210133586","https://openalex.org/I133731052"]},{"raw_affiliation_string":"Medical Biotechnology Department, Biotechnology Research Center, Pasteur Institute of Iran, Tehran, Iran","institution_ids":["https://openalex.org/I1301411061","https://openalex.org/I4210088961"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5017969980"],"corresponding_institution_ids":["https://openalex.org/I1301411061","https://openalex.org/I133731052","https://openalex.org/I4210088961","https://openalex.org/I4210133586"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.8735,"has_fulltext":false,"cited_by_count":51,"citation_normalized_percentile":{"value":0.93698781,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"35","issue":"8","first_page":"1436","last_page":"1437"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13283","display_name":"Mental Health Research Topics","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/3205","display_name":"Experimental and Cognitive Psychology"},"field":{"id":"https://openalex.org/fields/32","display_name":"Psychology"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T13283","display_name":"Mental Health Research Topics","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/3205","display_name":"Experimental and Cognitive Psychology"},"field":{"id":"https://openalex.org/fields/32","display_name":"Psychology"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9753000140190125,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/centrality","display_name":"Centrality","score":0.9658241271972656},{"id":"https://openalex.org/keywords/decipher","display_name":"DECIPHER","score":0.8277817964553833},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7614536285400391},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.7401726841926575},{"id":"https://openalex.org/keywords/measure","display_name":"Measure (data warehouse)","score":0.6776965260505676},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.63577800989151},{"id":"https://openalex.org/keywords/network-analysis","display_name":"Network analysis","score":0.6081080436706543},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.49124830961227417},{"id":"https://openalex.org/keywords/network-theory","display_name":"Network theory","score":0.46195223927497864},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.43392595648765564},{"id":"https://openalex.org/keywords/network-science","display_name":"Network science","score":0.42040926218032837},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.41781699657440186},{"id":"https://openalex.org/keywords/complex-network","display_name":"Complex network","score":0.31572219729423523},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1253998875617981},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.10951578617095947},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.09976780414581299},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.09164813160896301},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.0845130980014801},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.06190398335456848}],"concepts":[{"id":"https://openalex.org/C53811970","wikidata":"https://www.wikidata.org/wiki/Q5062194","display_name":"Centrality","level":2,"score":0.9658241271972656},{"id":"https://openalex.org/C164614171","wikidata":"https://www.wikidata.org/wiki/Q5204775","display_name":"DECIPHER","level":2,"score":0.8277817964553833},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7614536285400391},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.7401726841926575},{"id":"https://openalex.org/C2780009758","wikidata":"https://www.wikidata.org/wiki/Q6804172","display_name":"Measure (data warehouse)","level":2,"score":0.6776965260505676},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.63577800989151},{"id":"https://openalex.org/C32946077","wikidata":"https://www.wikidata.org/wiki/Q618079","display_name":"Network analysis","level":2,"score":0.6081080436706543},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.49124830961227417},{"id":"https://openalex.org/C11804174","wikidata":"https://www.wikidata.org/wiki/Q1192971","display_name":"Network theory","level":2,"score":0.46195223927497864},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.43392595648765564},{"id":"https://openalex.org/C137753397","wikidata":"https://www.wikidata.org/wiki/Q2434424","display_name":"Network science","level":3,"score":0.42040926218032837},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.41781699657440186},{"id":"https://openalex.org/C34947359","wikidata":"https://www.wikidata.org/wiki/Q665189","display_name":"Complex network","level":2,"score":0.31572219729423523},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1253998875617981},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.10951578617095947},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.09976780414581299},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.09164813160896301},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0845130980014801},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.06190398335456848},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bty819","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty819","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30239607","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30239607","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W229097380","https://openalex.org/W289419902","https://openalex.org/W2031611985","https://openalex.org/W2048095866","https://openalex.org/W2098580305","https://openalex.org/W2109296605","https://openalex.org/W2112615110","https://openalex.org/W2116819994","https://openalex.org/W2117492258","https://openalex.org/W2127405101","https://openalex.org/W2128728535","https://openalex.org/W2157635833","https://openalex.org/W2176533785","https://openalex.org/W2187089797","https://openalex.org/W2765203444","https://openalex.org/W3101413764","https://openalex.org/W3102501663","https://openalex.org/W3105709855","https://openalex.org/W4302412750","https://openalex.org/W6608852248","https://openalex.org/W6610456749","https://openalex.org/W6685340275","https://openalex.org/W6845473283"],"related_works":["https://openalex.org/W1505600734","https://openalex.org/W2626653991","https://openalex.org/W4256540064","https://openalex.org/W1515007544","https://openalex.org/W2046736422","https://openalex.org/W4314446191","https://openalex.org/W3134928396","https://openalex.org/W1554338108","https://openalex.org/W2161532087","https://openalex.org/W2379664873"],"abstract_inverted_index":{"CINNA":[0],"is":[1],"available":[2],"in":[3],"CRAN,":[4],"including":[5],"a":[6],"tutorial.":[7],"URL:":[8],"https://cran.r-project.org/web/packages/CINNA/index.html.":[9]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2}],"updated_date":"2026-03-04T09:10:02.777135","created_date":"2025-10-10T00:00:00"}
