{"id":"https://openalex.org/W2890902164","doi":"https://doi.org/10.1093/bioinformatics/bty787","title":"Prediction of protein group function by iterative classification on functional relevance network","display_name":"Prediction of protein group function by iterative classification on functional relevance network","publication_year":2018,"publication_date":"2018-09-04","ids":{"openalex":"https://openalex.org/W2890902164","doi":"https://doi.org/10.1093/bioinformatics/bty787","mag":"2890902164","pmid":"https://pubmed.ncbi.nlm.nih.gov/30192921"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty787","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty787","pdf_url":"https://watermark.silverchair.com/bty787.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAr4wggK6BgkqhkiG9w0BBwagggKrMIICpwIBADCCAqAGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMtHwNbrzpI9DclMA5AgEQgIICcagRFIqQt2OHCQQ_2o_geuu-AaGBi3WEJbcAXX181oW40Hz-ZQD9CZWzTSrfBNsPp3qkYvhOK8apCW850LcBo2CRgHo9XGRl28ZO4mIZAzppQp0OnHPeq8Eq7NX_mPdefgucO8IKW-RhSCjJl18_LRY-9WsC2JzWQlaCWOb_dKhGnLI_i4a-rOjqKhhMvFPD6zApbMBHnk1ATGGx0Ih7ks5HZCH4NKHVZPx5cBvDZrjn6dax0OYTKlbgBYvtOZU3c0rS97V8eZ9E6UjBLZG5LZUlzf09C9UGqjI5cWj5ZL6uro3Uckm941W-IxA3pjS7X5fBwVsAW61REt7ZqZML_-7I7lYNrUl9MFHvTR9t1E6W4yEyWAFvALHT1eu1q2sEoFTNv2irBKyvsWA949PmKcJE9RB8BSl-BtTRLv2uiIwtaTgEV6vLISdV83kVwI66FxA96Ux3iqmz12QAdh5sHE7DLPNfNgAvtqvAkrjxX2jofJHGD0cr4BfYSCzLKvfqJgx6MH0i5SENijBuuwnI5c5-O0OC39Y-IK5oZ4tCg7yzYCLgl3qj3qArJSXLwDskZeFGYsMPGunhn-jODSXy3iTe--EFqcrdNyuLj8vp6Crbv5dtXvBLvMsjEK1_up04F6OYopME1B-7-E8BT_oNCWs5WdYpo4w_Pb2keOYUNx1DjCf5w2JjyRgwoQ7jK6TD-4SRK1XxQy9othapARSBb8aSFntSXoLgGboV_VeEnFkqQ_nnnneaAVYRaic_0cBCDH2neJyjSA12Fhhe3N4o3otvch4EZdEwkCqlUb1606CYf5fKeRXMInEvRohRb5kTd10","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://watermark.silverchair.com/bty787.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAr4wggK6BgkqhkiG9w0BBwagggKrMIICpwIBADCCAqAGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMtHwNbrzpI9DclMA5AgEQgIICcagRFIqQt2OHCQQ_2o_geuu-AaGBi3WEJbcAXX181oW40Hz-ZQD9CZWzTSrfBNsPp3qkYvhOK8apCW850LcBo2CRgHo9XGRl28ZO4mIZAzppQp0OnHPeq8Eq7NX_mPdefgucO8IKW-RhSCjJl18_LRY-9WsC2JzWQlaCWOb_dKhGnLI_i4a-rOjqKhhMvFPD6zApbMBHnk1ATGGx0Ih7ks5HZCH4NKHVZPx5cBvDZrjn6dax0OYTKlbgBYvtOZU3c0rS97V8eZ9E6UjBLZG5LZUlzf09C9UGqjI5cWj5ZL6uro3Uckm941W-IxA3pjS7X5fBwVsAW61REt7ZqZML_-7I7lYNrUl9MFHvTR9t1E6W4yEyWAFvALHT1eu1q2sEoFTNv2irBKyvsWA949PmKcJE9RB8BSl-BtTRLv2uiIwtaTgEV6vLISdV83kVwI66FxA96Ux3iqmz12QAdh5sHE7DLPNfNgAvtqvAkrjxX2jofJHGD0cr4BfYSCzLKvfqJgx6MH0i5SENijBuuwnI5c5-O0OC39Y-IK5oZ4tCg7yzYCLgl3qj3qArJSXLwDskZeFGYsMPGunhn-jODSXy3iTe--EFqcrdNyuLj8vp6Crbv5dtXvBLvMsjEK1_up04F6OYopME1B-7-E8BT_oNCWs5WdYpo4w_Pb2keOYUNx1DjCf5w2JjyRgwoQ7jK6TD-4SRK1XxQy9othapARSBb8aSFntSXoLgGboV_VeEnFkqQ_nnnneaAVYRaic_0cBCDH2neJyjSA12Fhhe3N4o3otvch4EZdEwkCqlUb1606CYf5fKeRXMInEvRohRb5kTd10","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068424092","display_name":"Ishita Khan","orcid":null},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]},{"id":"https://openalex.org/I4210133358","display_name":"Search","ror":"https://ror.org/03f78hn46","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210133358"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ishita K Khan","raw_affiliation_strings":["Department of Computer Science, Purdue University, West Lafayette, IN, USA","eBay Search Science, San Jose, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Purdue University, West Lafayette, IN, USA","institution_ids":["https://openalex.org/I219193219"]},{"raw_affiliation_string":"eBay Search Science, San Jose, CA, USA","institution_ids":["https://openalex.org/I4210133358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064708063","display_name":"Aashish Jain","orcid":"https://orcid.org/0000-0001-7580-8694"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aashish Jain","raw_affiliation_strings":["Department of Computer Science, Purdue University, West Lafayette, IN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Purdue University, West Lafayette, IN, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089740833","display_name":"Reda Rawi","orcid":"https://orcid.org/0000-0002-0445-2325"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210134534","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210134534"]},{"id":"https://openalex.org/I4210144839","display_name":"Hamad bin Khalifa University","ror":"https://ror.org/03eyq4y97","country_code":"QA","type":"education","lineage":["https://openalex.org/I4210144839"]}],"countries":["QA","US"],"is_corresponding":false,"raw_author_name":"Reda Rawi","raw_affiliation_strings":["Qatar Computing Research Institute, Hamad Bin Khalifa University, Doha, Qatar","Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Qatar Computing Research Institute, Hamad Bin Khalifa University, Doha, Qatar","institution_ids":["https://openalex.org/I4210144839"]},{"raw_affiliation_string":"Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210134534","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013350725","display_name":"Halima Bensmail","orcid":"https://orcid.org/0000-0001-6700-5752"},"institutions":[{"id":"https://openalex.org/I4210144839","display_name":"Hamad bin Khalifa University","ror":"https://ror.org/03eyq4y97","country_code":"QA","type":"education","lineage":["https://openalex.org/I4210144839"]}],"countries":["QA"],"is_corresponding":false,"raw_author_name":"Halima Bensmail","raw_affiliation_strings":["Qatar Computing Research Institute, Hamad Bin Khalifa University, Doha, Qatar"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Qatar Computing Research Institute, Hamad Bin Khalifa University, Doha, Qatar","institution_ids":["https://openalex.org/I4210144839"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062293219","display_name":"Daisuke Kihara","orcid":"https://orcid.org/0000-0003-4091-6614"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Daisuke Kihara","raw_affiliation_strings":["Department of Biological Sciences, Purdue University, West Lafayette, IN, USA","Department of Computer Science, Purdue University, West Lafayette, IN, USA"],"raw_orcid":"https://orcid.org/0000-0003-4091-6614","affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Purdue University, West Lafayette, IN, USA","institution_ids":["https://openalex.org/I219193219"]},{"raw_affiliation_string":"Department of Computer Science, Purdue University, West Lafayette, IN, USA","institution_ids":["https://openalex.org/I219193219"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5062293219"],"corresponding_institution_ids":["https://openalex.org/I219193219"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.2784,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.57744581,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"35","issue":"8","first_page":"1388","last_page":"1394"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.7049000263214111,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.7049000263214111,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.21459999680519104,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.030400000512599945,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.606732189655304},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5947089195251465},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5434205532073975},{"id":"https://openalex.org/keywords/protein-function-prediction","display_name":"Protein function prediction","score":0.4974389374256134},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.48555728793144226},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4697349965572357},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4588731825351715},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.4442235827445984},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.43341487646102905},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41293075680732727},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.35694563388824463},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32959693670272827},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.31272226572036743},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.29340052604675293},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.27838897705078125},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21790486574172974},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08870768547058105}],"concepts":[{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.606732189655304},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5947089195251465},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5434205532073975},{"id":"https://openalex.org/C207060522","wikidata":"https://www.wikidata.org/wiki/Q7251473","display_name":"Protein function prediction","level":4,"score":0.4974389374256134},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.48555728793144226},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4697349965572357},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4588731825351715},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.4442235827445984},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.43341487646102905},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41293075680732727},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.35694563388824463},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32959693670272827},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.31272226572036743},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.29340052604675293},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.27838897705078125},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21790486574172974},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08870768547058105},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bty787","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty787","pdf_url":"https://watermark.silverchair.com/bty787.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAr4wggK6BgkqhkiG9w0BBwagggKrMIICpwIBADCCAqAGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMtHwNbrzpI9DclMA5AgEQgIICcagRFIqQt2OHCQQ_2o_geuu-AaGBi3WEJbcAXX181oW40Hz-ZQD9CZWzTSrfBNsPp3qkYvhOK8apCW850LcBo2CRgHo9XGRl28ZO4mIZAzppQp0OnHPeq8Eq7NX_mPdefgucO8IKW-RhSCjJl18_LRY-9WsC2JzWQlaCWOb_dKhGnLI_i4a-rOjqKhhMvFPD6zApbMBHnk1ATGGx0Ih7ks5HZCH4NKHVZPx5cBvDZrjn6dax0OYTKlbgBYvtOZU3c0rS97V8eZ9E6UjBLZG5LZUlzf09C9UGqjI5cWj5ZL6uro3Uckm941W-IxA3pjS7X5fBwVsAW61REt7ZqZML_-7I7lYNrUl9MFHvTR9t1E6W4yEyWAFvALHT1eu1q2sEoFTNv2irBKyvsWA949PmKcJE9RB8BSl-BtTRLv2uiIwtaTgEV6vLISdV83kVwI66FxA96Ux3iqmz12QAdh5sHE7DLPNfNgAvtqvAkrjxX2jofJHGD0cr4BfYSCzLKvfqJgx6MH0i5SENijBuuwnI5c5-O0OC39Y-IK5oZ4tCg7yzYCLgl3qj3qArJSXLwDskZeFGYsMPGunhn-jODSXy3iTe--EFqcrdNyuLj8vp6Crbv5dtXvBLvMsjEK1_up04F6OYopME1B-7-E8BT_oNCWs5WdYpo4w_Pb2keOYUNx1DjCf5w2JjyRgwoQ7jK6TD-4SRK1XxQy9othapARSBb8aSFntSXoLgGboV_VeEnFkqQ_nnnneaAVYRaic_0cBCDH2neJyjSA12Fhhe3N4o3otvch4EZdEwkCqlUb1606CYf5fKeRXMInEvRohRb5kTd10","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30192921","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30192921","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:6103322","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6477972","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty787","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty787","pdf_url":"https://watermark.silverchair.com/bty787.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAr4wggK6BgkqhkiG9w0BBwagggKrMIICpwIBADCCAqAGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMtHwNbrzpI9DclMA5AgEQgIICcagRFIqQt2OHCQQ_2o_geuu-AaGBi3WEJbcAXX181oW40Hz-ZQD9CZWzTSrfBNsPp3qkYvhOK8apCW850LcBo2CRgHo9XGRl28ZO4mIZAzppQp0OnHPeq8Eq7NX_mPdefgucO8IKW-RhSCjJl18_LRY-9WsC2JzWQlaCWOb_dKhGnLI_i4a-rOjqKhhMvFPD6zApbMBHnk1ATGGx0Ih7ks5HZCH4NKHVZPx5cBvDZrjn6dax0OYTKlbgBYvtOZU3c0rS97V8eZ9E6UjBLZG5LZUlzf09C9UGqjI5cWj5ZL6uro3Uckm941W-IxA3pjS7X5fBwVsAW61REt7ZqZML_-7I7lYNrUl9MFHvTR9t1E6W4yEyWAFvALHT1eu1q2sEoFTNv2irBKyvsWA949PmKcJE9RB8BSl-BtTRLv2uiIwtaTgEV6vLISdV83kVwI66FxA96Ux3iqmz12QAdh5sHE7DLPNfNgAvtqvAkrjxX2jofJHGD0cr4BfYSCzLKvfqJgx6MH0i5SENijBuuwnI5c5-O0OC39Y-IK5oZ4tCg7yzYCLgl3qj3qArJSXLwDskZeFGYsMPGunhn-jODSXy3iTe--EFqcrdNyuLj8vp6Crbv5dtXvBLvMsjEK1_up04F6OYopME1B-7-E8BT_oNCWs5WdYpo4w_Pb2keOYUNx1DjCf5w2JjyRgwoQ7jK6TD-4SRK1XxQy9othapARSBb8aSFntSXoLgGboV_VeEnFkqQ_nnnneaAVYRaic_0cBCDH2neJyjSA12Fhhe3N4o3otvch4EZdEwkCqlUb1606CYf5fKeRXMInEvRohRb5kTd10","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4202522359","display_name":null,"funder_award_id":"R01GM123055","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6575698428","display_name":null,"funder_award_id":"DMS1614777","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6857722962","display_name":null,"funder_award_id":"R01 GM123055","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G7576543473","display_name":null,"funder_award_id":"DBI1262189","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2890902164.pdf","grobid_xml":"https://content.openalex.org/works/W2890902164.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1489128807","https://openalex.org/W1663797894","https://openalex.org/W1987219048","https://openalex.org/W2002044972","https://openalex.org/W2015292449","https://openalex.org/W2025855398","https://openalex.org/W2032319966","https://openalex.org/W2055043387","https://openalex.org/W2058293922","https://openalex.org/W2088367672","https://openalex.org/W2092123736","https://openalex.org/W2100494857","https://openalex.org/W2107710781","https://openalex.org/W2110400988","https://openalex.org/W2110960126","https://openalex.org/W2111209586","https://openalex.org/W2117486996","https://openalex.org/W2121343862","https://openalex.org/W2130410032","https://openalex.org/W2140735973","https://openalex.org/W2143965041","https://openalex.org/W2165232124","https://openalex.org/W2166468869","https://openalex.org/W2537623931","https://openalex.org/W2557496587","https://openalex.org/W2559588208","https://openalex.org/W2963614249"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4380994516","https://openalex.org/W2556260348"],"abstract_inverted_index":{"MOTIVATION:":[0],"Biological":[1],"experiments":[2],"including":[3],"proteomics":[4,134],"and":[5,84,135,197],"transcriptomics":[6],"approaches":[7,187],"often":[8],"reveal":[9],"sets":[10],"of":[11,28,31,40,51,67,97,107,128,173,180,192],"proteins":[12,42,53,68,120,129,193],"that":[13,64,124],"are":[14,101,204],"most":[15],"likely":[16],"to":[17,36,70,93,104],"be":[18,143],"involved":[19],"in":[20,47,73,139,194],"a":[21,29,44,62,74,122,157],"disease/disorder.":[22],"To":[23],"understand":[24],"the":[25,38,41,98,140,161],"functional":[26,81,126,150,190],"nature":[27,191],"set":[30],"proteins,":[32,99],"it":[33],"is":[34,54,153],"important":[35],"capture":[37],"function":[39,50,106,116,182],"as":[43,121],"group,":[45],"even":[46,169],"cases":[48],"where":[49],"individual":[52,108],"not":[55],"known.":[56],"In":[57],"this":[58],"work,":[59],"we":[60],"propose":[61],"model":[63],"takes":[65],"groups":[66,146],"found":[69],"work":[71],"together":[72],"certain":[75],"biological":[76,195],"context,":[77],"integrates":[78],"them":[79],"into":[80,145],"relevance":[82,127],"networks,":[83],"subsequently":[85],"employs":[86],"an":[87],"iterative":[88,114],"inference":[89],"on":[90],"graphical":[91,159],"models":[92],"identify":[94],"group":[95,115],"functions":[96],"which":[100,152],"then":[102],"extended":[103],"predict":[105],"proteins.":[109],"RESULTS:":[110],"The":[111,178],"proposed":[112],"algorithm,":[113],"prediction":[117],"(iGFP),":[118],"depicts":[119],"graph":[123,141],"represents":[125],"considering":[130],"their":[131,148],"known":[132],"functional,":[133],"transcriptional":[136],"features.":[137],"Proteins":[138],"will":[142],"clustered":[144],"by":[147],"mutual":[149],"relevance,":[151],"iteratively":[154],"updated":[155],"using":[156],"probabilistic":[158],"model,":[160],"conditional":[162],"random":[163],"field.":[164],"iGFP":[165],"showed":[166],"robust":[167],"accuracy":[168],"when":[170],"substantial":[171],"amount":[172],"GO":[174],"annotations":[175],"were":[176],"missing.":[177],"perspective":[179],"'group'":[181],"annotation":[183],"opens":[184],"up":[185],"novel":[186],"for":[188],"understanding":[189],"systems.Availability":[196],"implementation:":[198],"http://kiharalab.org/iGFP/.":[199],"SUPPLEMENTARY":[200],"INFORMATION:":[201],"Supplementary":[202],"data":[203],"available":[205],"at":[206],"Bioinformatics":[207],"online.":[208]},"counts_by_year":[{"year":2024,"cited_by_count":4},{"year":2022,"cited_by_count":3},{"year":2019,"cited_by_count":3}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
