{"id":"https://openalex.org/W2889339419","doi":"https://doi.org/10.1093/bioinformatics/bty780","title":"Co-registration and analysis of multiple imaging mass spectrometry datasets targeting different analytes","display_name":"Co-registration and analysis of multiple imaging mass spectrometry datasets targeting different analytes","publication_year":2018,"publication_date":"2018-09-01","ids":{"openalex":"https://openalex.org/W2889339419","doi":"https://doi.org/10.1093/bioinformatics/bty780","mag":"2889339419","pmid":"https://pubmed.ncbi.nlm.nih.gov/30184057"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty780","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty780","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061802134","display_name":"Nathan Heath Patterson","orcid":"https://orcid.org/0000-0002-0064-1583"},"institutions":[{"id":"https://openalex.org/I70931966","display_name":"Universit\u00e9 de Montr\u00e9al","ror":"https://ror.org/0161xgx34","country_code":"CA","type":"education","lineage":["https://openalex.org/I70931966"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Nathan Heath Patterson","raw_affiliation_strings":["Department of Chemistry, Universit\u00e9 de Montr\u00e9al, Montreal, Quebec, Canada"],"raw_orcid":"https://orcid.org/0000-0002-0064-1583","affiliations":[{"raw_affiliation_string":"Department of Chemistry, Universit\u00e9 de Montr\u00e9al, Montreal, Quebec, Canada","institution_ids":["https://openalex.org/I70931966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087533584","display_name":"Ethan Yang","orcid":"https://orcid.org/0000-0002-6027-1019"},"institutions":[{"id":"https://openalex.org/I70931966","display_name":"Universit\u00e9 de Montr\u00e9al","ror":"https://ror.org/0161xgx34","country_code":"CA","type":"education","lineage":["https://openalex.org/I70931966"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ethan Yang","raw_affiliation_strings":["Department of Chemistry, Universit\u00e9 de Montr\u00e9al, Montreal, Quebec, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Universit\u00e9 de Montr\u00e9al, Montreal, Quebec, Canada","institution_ids":["https://openalex.org/I70931966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022003616","display_name":"Elizabeth-Ann Kranjec","orcid":null},"institutions":[{"id":"https://openalex.org/I70931966","display_name":"Universit\u00e9 de Montr\u00e9al","ror":"https://ror.org/0161xgx34","country_code":"CA","type":"education","lineage":["https://openalex.org/I70931966"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Elizabeth-Ann Kranjec","raw_affiliation_strings":["Department of Chemistry, Universit\u00e9 de Montr\u00e9al, Montreal, Quebec, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Universit\u00e9 de Montr\u00e9al, Montreal, Quebec, Canada","institution_ids":["https://openalex.org/I70931966"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038314260","display_name":"Pierre Chaurand","orcid":"https://orcid.org/0000-0001-6821-7001"},"institutions":[{"id":"https://openalex.org/I70931966","display_name":"Universit\u00e9 de Montr\u00e9al","ror":"https://ror.org/0161xgx34","country_code":"CA","type":"education","lineage":["https://openalex.org/I70931966"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Pierre Chaurand","raw_affiliation_strings":["Department of Chemistry, Universit\u00e9 de Montr\u00e9al, Montreal, Quebec, Canada"],"raw_orcid":"https://orcid.org/0000-0001-6821-7001","affiliations":[{"raw_affiliation_string":"Department of Chemistry, Universit\u00e9 de Montr\u00e9al, Montreal, Quebec, Canada","institution_ids":["https://openalex.org/I70931966"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5022003616","https://openalex.org/A5038314260","https://openalex.org/A5061802134"],"corresponding_institution_ids":["https://openalex.org/I70931966"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":2.1087,"has_fulltext":false,"cited_by_count":31,"citation_normalized_percentile":{"value":0.86797135,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"35","issue":"7","first_page":"1261","last_page":"1262"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9768999814987183,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9768999814987183,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.009700000286102295,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.00419999985024333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7911828756332397},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7804543972015381},{"id":"https://openalex.org/keywords/mass-spectrometry-imaging","display_name":"Mass spectrometry imaging","score":0.6480788588523865},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6398195624351501},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.6131279468536377},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5129444003105164},{"id":"https://openalex.org/keywords/multivariate-statistics","display_name":"Multivariate statistics","score":0.5021011829376221},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.45272472500801086},{"id":"https://openalex.org/keywords/analyte","display_name":"Analyte","score":0.4371708333492279},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.4252024292945862},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.37336966395378113},{"id":"https://openalex.org/keywords/mass-spectrometry","display_name":"Mass spectrometry","score":0.35375410318374634},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.296644926071167},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.21813395619392395},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.16265511512756348},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.14292150735855103},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.14250001311302185},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08172699809074402}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7911828756332397},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7804543972015381},{"id":"https://openalex.org/C24066741","wikidata":"https://www.wikidata.org/wiki/Q3796564","display_name":"Mass spectrometry imaging","level":3,"score":0.6480788588523865},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6398195624351501},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.6131279468536377},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5129444003105164},{"id":"https://openalex.org/C161584116","wikidata":"https://www.wikidata.org/wiki/Q1952580","display_name":"Multivariate statistics","level":2,"score":0.5021011829376221},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.45272472500801086},{"id":"https://openalex.org/C10390740","wikidata":"https://www.wikidata.org/wiki/Q2282401","display_name":"Analyte","level":2,"score":0.4371708333492279},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.4252024292945862},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.37336966395378113},{"id":"https://openalex.org/C162356407","wikidata":"https://www.wikidata.org/wiki/Q180809","display_name":"Mass spectrometry","level":2,"score":0.35375410318374634},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.296644926071167},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.21813395619392395},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.16265511512756348},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.14292150735855103},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.14250001311302185},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08172699809074402},{"id":"https://openalex.org/C147789679","wikidata":"https://www.wikidata.org/wiki/Q11372","display_name":"Physical chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D007477","descriptor_name":"Ions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007477","descriptor_name":"Ions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007477","descriptor_name":"Ions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015999","descriptor_name":"Multivariate Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015999","descriptor_name":"Multivariate Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015999","descriptor_name":"Multivariate Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019032","descriptor_name":"Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019032","descriptor_name":"Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019032","descriptor_name":"Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bty780","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty780","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30184057","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30184057","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":3,"referenced_works":["https://openalex.org/W2069228382","https://openalex.org/W2090244687","https://openalex.org/W2324663456"],"related_works":["https://openalex.org/W2082761856","https://openalex.org/W2071548110","https://openalex.org/W1991280445","https://openalex.org/W1995472698","https://openalex.org/W2016341282","https://openalex.org/W2501505803","https://openalex.org/W2315273856","https://openalex.org/W1969072535","https://openalex.org/W2067044389","https://openalex.org/W2071390337"],"abstract_inverted_index":{"MOTIVATION:":[0],"MALDI":[1],"imaging":[2],"mass":[3],"spectrometry":[4],"(IMS)":[5],"has":[6],"been":[7],"successfully":[8],"used":[9],"to":[10,41,74,101,126],"image":[11],"a":[12,43,48,102],"variety":[13],"of":[14,17,21,47,70,86,97,111],"biomolecules.":[15],"Imaging":[16],"the":[18,52,63,98,128],"many":[19],"classes":[20],"biomolecules":[22],"is":[23,93],"often":[24],"achieved":[25,94],"through":[26],"several":[27],"incompatible":[28,118],"sample":[29,119],"preparations.":[30],"Thus,":[31],"multiple":[32,38,58],"datasets":[33,56,81,100],"must":[34],"be":[35],"acquired":[36,82],"from":[37,57,83,113],"tissue":[39],"sections":[40,85],"obtain":[42],"total":[44],"molecular":[45,136],"overview":[46],"single":[49,55,79,103],"sample.":[50],"Addressing":[51],"need":[53],"for":[54,109,131],"IMS":[59,80,99,114],"analyses,":[60],"we":[61],"developed":[62],"R":[64,71],"package":[65,72],"RegCombIMS":[66],"as":[67,121,123],"an":[68],"extension":[69],"Cardinal":[73],"co-register,":[75],"combine":[76],"and":[77,91,133,144],"create":[78],"serial":[84],"tissue.":[87],"RESULTS:":[88],"Dataset":[89],"recombination":[90],"analysis":[92,125],"by":[95],"registration":[96],"coordinate":[104],"space.":[105],"The":[106,141],"workflow":[107],"allows":[108],"correlation":[110],"ions":[112],"acquisitions":[115],"that":[116],"require":[117],"preparations":[120],"well":[122],"multivariate":[124],"mine":[127],"combined":[129],"dataset":[130],"rapid":[132],"more":[134],"thorough":[135],"query.":[137],"AVAILABILITY":[138],"AND":[139],"IMPLEMENTATION:":[140],"source":[142],"code":[143,153],"example":[145],"data":[146,161],"are":[147,162],"freely":[148],"available":[149,163],"at":[150,164],"https://github.com/NHPatterson/RegCombIMS.":[151],"All":[152],"was":[154],"implemented":[155],"in":[156],"R.":[157],"SUPPLEMENTARY":[158],"INFORMATION:":[159],"Supplementary":[160],"Bioinformatics":[165],"online.":[166]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":1}],"updated_date":"2026-08-22T07:34:49.880490","created_date":"2025-10-10T00:00:00"}
