{"id":"https://openalex.org/W2896634772","doi":"https://doi.org/10.1093/bioinformatics/bty774","title":"Deconvoluting essential gene signatures for cancer growth from genomic expression in compound-treated cells","display_name":"Deconvoluting essential gene signatures for cancer growth from genomic expression in compound-treated cells","publication_year":2018,"publication_date":"2018-08-31","ids":{"openalex":"https://openalex.org/W2896634772","doi":"https://doi.org/10.1093/bioinformatics/bty774","mag":"2896634772","pmid":"https://pubmed.ncbi.nlm.nih.gov/30184045"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty774","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty774","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103282907","display_name":"Jin\u2010Myung Jung","orcid":"https://orcid.org/0000-0002-4962-8347"},"institutions":[{"id":"https://openalex.org/I16764540","display_name":"University of Suwon","ror":"https://ror.org/03ysk5e42","country_code":"KR","type":"education","lineage":["https://openalex.org/I16764540"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jinmyung Jung","raw_affiliation_strings":["Bio-Synergy Research Center, 291 Daehak-ro, Yuseong-gu, Daejeon, Republic of Korea","Department of Data Science, College of Information Technology, The University of Suwon, Bongdam-eup, Hwaseong, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Bio-Synergy Research Center, 291 Daehak-ro, Yuseong-gu, Daejeon, Republic of Korea","institution_ids":[]},{"raw_affiliation_string":"Department of Data Science, College of Information Technology, The University of Suwon, Bongdam-eup, Hwaseong, Republic of Korea","institution_ids":["https://openalex.org/I16764540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029565879","display_name":"Yeeok Kang","orcid":null},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Yeeok Kang","raw_affiliation_strings":["Department of Bio and Brain Engineering, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Bio and Brain Engineering, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon, Republic of Korea","institution_ids":["https://openalex.org/I157485424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013235154","display_name":"Harikrishna Paik","orcid":"https://orcid.org/0000-0002-3994-0695"},"institutions":[{"id":"https://openalex.org/I878022262","display_name":"Korea Institute of Science & Technology Information","ror":"https://ror.org/01k4yrm29","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I878022262"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hyojung Paik","raw_affiliation_strings":["Korea Institute of Science and Technology Information, Center for Applied Scientific Computing, Division of Supercomputing, Daejeon, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Korea Institute of Science and Technology Information, Center for Applied Scientific Computing, Division of Supercomputing, Daejeon, Republic of Korea","institution_ids":["https://openalex.org/I878022262"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103011138","display_name":"Mijin Kwon","orcid":"https://orcid.org/0000-0001-8977-8393"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Mijin Kwon","raw_affiliation_strings":["Department of Bio and Brain Engineering, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Bio and Brain Engineering, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon, Republic of Korea","institution_ids":["https://openalex.org/I157485424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002000972","display_name":"Hasun Yu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hasun Yu","raw_affiliation_strings":["Bio-Synergy Research Center, 291 Daehak-ro, Yuseong-gu, Daejeon, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Bio-Synergy Research Center, 291 Daehak-ro, Yuseong-gu, Daejeon, Republic of Korea","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037879375","display_name":"Doheon Lee","orcid":"https://orcid.org/0000-0001-9070-4316"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Doheon Lee","raw_affiliation_strings":["Bio-Synergy Research Center, 291 Daehak-ro, Yuseong-gu, Daejeon, Republic of Korea","Department of Bio and Brain Engineering, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Bio-Synergy Research Center, 291 Daehak-ro, Yuseong-gu, Daejeon, Republic of Korea","institution_ids":[]},{"raw_affiliation_string":"Department of Bio and Brain Engineering, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon, Republic of Korea","institution_ids":["https://openalex.org/I157485424"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5037879375"],"corresponding_institution_ids":["https://openalex.org/I157485424"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.2758,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.57189117,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"35","issue":"7","first_page":"1167","last_page":"1173"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.7281015515327454},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6720391511917114},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5977097153663635},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.5161986947059631},{"id":"https://openalex.org/keywords/crispr","display_name":"CRISPR","score":0.515975296497345},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4567278027534485},{"id":"https://openalex.org/keywords/lncap","display_name":"LNCaP","score":0.4209417402744293},{"id":"https://openalex.org/keywords/cancer-cell","display_name":"Cancer cell","score":0.31969815492630005},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.24410772323608398}],"concepts":[{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.7281015515327454},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6720391511917114},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5977097153663635},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.5161986947059631},{"id":"https://openalex.org/C98108389","wikidata":"https://www.wikidata.org/wiki/Q412563","display_name":"CRISPR","level":3,"score":0.515975296497345},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4567278027534485},{"id":"https://openalex.org/C2779723316","wikidata":"https://www.wikidata.org/wiki/Q6459234","display_name":"LNCaP","level":4,"score":0.4209417402744293},{"id":"https://openalex.org/C96232424","wikidata":"https://www.wikidata.org/wiki/Q4118072","display_name":"Cancer cell","level":3,"score":0.31969815492630005},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.24410772323608398}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020043","descriptor_name":"Genes, Essential","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020043","descriptor_name":"Genes, Essential","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020043","descriptor_name":"Genes, Essential","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bty774","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty774","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30184045","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30184045","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320333169","display_name":"National Science Foundation, United Arab Emirates","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W1555168845","https://openalex.org/W1934704664","https://openalex.org/W1965440903","https://openalex.org/W1971875278","https://openalex.org/W1973260880","https://openalex.org/W1982846895","https://openalex.org/W1998767819","https://openalex.org/W1999390452","https://openalex.org/W2026592619","https://openalex.org/W2043398720","https://openalex.org/W2095488795","https://openalex.org/W2096525273","https://openalex.org/W2098967508","https://openalex.org/W2099505694","https://openalex.org/W2103017472","https://openalex.org/W2124285840","https://openalex.org/W2125789330","https://openalex.org/W2135030836","https://openalex.org/W2540423520","https://openalex.org/W2612467560","https://openalex.org/W2734505834","https://openalex.org/W2915975108","https://openalex.org/W4211039187","https://openalex.org/W4234797890","https://openalex.org/W4285719527","https://openalex.org/W6632880023","https://openalex.org/W6729254492"],"related_works":["https://openalex.org/W2002128513","https://openalex.org/W2936512310","https://openalex.org/W3048341121","https://openalex.org/W2077190448","https://openalex.org/W2009966535","https://openalex.org/W3173461521","https://openalex.org/W2965869012","https://openalex.org/W3000149627","https://openalex.org/W2111172999","https://openalex.org/W2179689986"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
