{"id":"https://openalex.org/W2893264376","doi":"https://doi.org/10.1093/bioinformatics/bty764","title":"A generalized framework for controlling FDR in gene regulatory network inference","display_name":"A generalized framework for controlling FDR in gene regulatory network inference","publication_year":2018,"publication_date":"2018-08-29","ids":{"openalex":"https://openalex.org/W2893264376","doi":"https://doi.org/10.1093/bioinformatics/bty764","mag":"2893264376","pmid":"https://pubmed.ncbi.nlm.nih.gov/30169550"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty764","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty764","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/6/1026/48967463/bioinformatics_35_6_1026.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/6/1026/48967463/bioinformatics_35_6_1026.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103212147","display_name":"Daniel Morgan","orcid":"https://orcid.org/0000-0001-8326-6178"},"institutions":[{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]},{"id":"https://openalex.org/I161593684","display_name":"Stockholm University","ror":"https://ror.org/05f0yaq80","country_code":"SE","type":"education","lineage":["https://openalex.org/I161593684"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Daniel Morgan","raw_affiliation_strings":["Department of Biochemistry and Biophysics, Stockholm Bioinformatics Center, Science for Life Laboratory, Stockholm University, Stockholm, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Biophysics, Stockholm Bioinformatics Center, Science for Life Laboratory, Stockholm University, Stockholm, Sweden","institution_ids":["https://openalex.org/I2800139495","https://openalex.org/I161593684"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083934419","display_name":"Andreas Tj\u00e4rnberg","orcid":"https://orcid.org/0000-0003-0064-1791"},"institutions":[{"id":"https://openalex.org/I102134673","display_name":"Link\u00f6ping University","ror":"https://ror.org/05ynxx418","country_code":"SE","type":"education","lineage":["https://openalex.org/I102134673"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Andreas Tj\u00e4rnberg","raw_affiliation_strings":["Department of Physics, Chemistry and Biology/Bioinformatics, Link\u00f6ping University, Link\u00f6ping, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Physics, Chemistry and Biology/Bioinformatics, Link\u00f6ping University, Link\u00f6ping, Sweden","institution_ids":["https://openalex.org/I102134673"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039574191","display_name":"Torbj\u00f6rn E. M. Nordling","orcid":"https://orcid.org/0000-0003-4867-6707"},"institutions":[{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Torbj\u00f6rn E M Nordling","raw_affiliation_strings":["Department of Mechanical Engineering, National Cheng Kung University, Tainan, Taiwan"],"affiliations":[{"raw_affiliation_string":"Department of Mechanical Engineering, National Cheng Kung University, Tainan, Taiwan","institution_ids":["https://openalex.org/I91807558"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032432650","display_name":"Erik L. L. Sonnhammer","orcid":"https://orcid.org/0000-0002-9015-5588"},"institutions":[{"id":"https://openalex.org/I161593684","display_name":"Stockholm University","ror":"https://ror.org/05f0yaq80","country_code":"SE","type":"education","lineage":["https://openalex.org/I161593684"]},{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Erik L L Sonnhammer","raw_affiliation_strings":["Department of Biochemistry and Biophysics, Stockholm Bioinformatics Center, Science for Life Laboratory, Stockholm University, Stockholm, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Biophysics, Stockholm Bioinformatics Center, Science for Life Laboratory, Stockholm University, Stockholm, Sweden","institution_ids":["https://openalex.org/I2800139495","https://openalex.org/I161593684"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5032432650"],"corresponding_institution_ids":["https://openalex.org/I161593684","https://openalex.org/I2800139495"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.7354,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.70395889,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"35","issue":"6","first_page":"1026","last_page":"1032"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10928","display_name":"Probabilistic and Robust Engineering Design","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11798","display_name":"Optimal Experimental Design Methods","score":0.98580002784729,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bootstrapping","display_name":"Bootstrapping (finance)","score":0.8517213463783264},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7981967329978943},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7252592444419861},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.49799394607543945},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.466946005821228},{"id":"https://openalex.org/keywords/lasso","display_name":"Lasso (programming language)","score":0.43703073263168335},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3630009889602661},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.327927827835083},{"id":"https://openalex.org/keywords/econometrics","display_name":"Econometrics","score":0.20758125185966492},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.174724280834198}],"concepts":[{"id":"https://openalex.org/C207609745","wikidata":"https://www.wikidata.org/wiki/Q4944086","display_name":"Bootstrapping (finance)","level":2,"score":0.8517213463783264},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7981967329978943},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7252592444419861},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.49799394607543945},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.466946005821228},{"id":"https://openalex.org/C37616216","wikidata":"https://www.wikidata.org/wiki/Q3218363","display_name":"Lasso (programming language)","level":2,"score":0.43703073263168335},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3630009889602661},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.327927827835083},{"id":"https://openalex.org/C149782125","wikidata":"https://www.wikidata.org/wiki/Q160039","display_name":"Econometrics","level":1,"score":0.20758125185966492},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.174724280834198},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bty764","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty764","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/6/1026/48967463/bioinformatics_35_6_1026.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30169550","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30169550","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:DiVA.org:su-164632","is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-164632","pdf_url":null,"source":{"id":"https://openalex.org/S4306401559","display_name":"KTH Publication Database DiVA (KTH Royal Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty764","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty764","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/6/1026/48967463/bioinformatics_35_6_1026.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G562712004","display_name":null,"funder_award_id":"105-2218-E-006-016-MY2","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"}],"funders":[{"id":"https://openalex.org/F4320322795","display_name":"Ministry of Science and Technology, Taiwan","ror":"https://ror.org/02kv4zf79"},{"id":"https://openalex.org/F4320324663","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2893264376.pdf","grobid_xml":"https://content.openalex.org/works/W2893264376.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1971266246","https://openalex.org/W1986688807","https://openalex.org/W1995945562","https://openalex.org/W2025191512","https://openalex.org/W2028553898","https://openalex.org/W2038766854","https://openalex.org/W2044525257","https://openalex.org/W2076372398","https://openalex.org/W2076513103","https://openalex.org/W2081129357","https://openalex.org/W2099786058","https://openalex.org/W2106555403","https://openalex.org/W2109553965","https://openalex.org/W2135046866","https://openalex.org/W2150686846","https://openalex.org/W2150940164","https://openalex.org/W2178240050","https://openalex.org/W2562162676","https://openalex.org/W2608543022","https://openalex.org/W2797563284","https://openalex.org/W2997644599","https://openalex.org/W3037000643","https://openalex.org/W4399582985","https://openalex.org/W6682241100","https://openalex.org/W6868925584"],"related_works":["https://openalex.org/W1534274833","https://openalex.org/W3117246195","https://openalex.org/W156620619","https://openalex.org/W2616249226","https://openalex.org/W2098233217","https://openalex.org/W2914363205","https://openalex.org/W2997844990","https://openalex.org/W1598221548","https://openalex.org/W2800240633","https://openalex.org/W4387595596"],"abstract_inverted_index":{"https://bitbucket.org/sonnhammergrni/genespider/src/NB/%2B":[0],"Methods/NestBoot.m.":[1]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
