{"id":"https://openalex.org/W2894601800","doi":"https://doi.org/10.1093/bioinformatics/bty758","title":"PlayMolecule BindScope: large scale CNN-based virtual screening on the web","display_name":"PlayMolecule BindScope: large scale CNN-based virtual screening on the web","publication_year":2018,"publication_date":"2018-08-29","ids":{"openalex":"https://openalex.org/W2894601800","doi":"https://doi.org/10.1093/bioinformatics/bty758","mag":"2894601800","pmid":"https://pubmed.ncbi.nlm.nih.gov/30169549"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty758","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty758","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048906009","display_name":"Miha \u0160kali\u010d","orcid":"https://orcid.org/0000-0003-4143-4609"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I2801864671","display_name":"Barcelona Biomedical Research Park","ror":"https://ror.org/05sajct49","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801864671"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Miha Skalic","raw_affiliation_strings":["Computational Biophysics Laboratory, Universitat Pompeu Fabra, Barcelona Biomedical Research Park, Barcelona, Spain"],"raw_orcid":"https://orcid.org/0000-0003-4143-4609","affiliations":[{"raw_affiliation_string":"Computational Biophysics Laboratory, Universitat Pompeu Fabra, Barcelona Biomedical Research Park, Barcelona, Spain","institution_ids":["https://openalex.org/I170486558","https://openalex.org/I2801864671"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103860765","display_name":"G\u00e9rard Martinez","orcid":"https://orcid.org/0000-0001-6277-6769"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I2801864671","display_name":"Barcelona Biomedical Research Park","ror":"https://ror.org/05sajct49","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801864671"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Gerard Mart\u00ednez-Rosell","raw_affiliation_strings":["Computational Biophysics Laboratory, Universitat Pompeu Fabra, Barcelona Biomedical Research Park, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biophysics Laboratory, Universitat Pompeu Fabra, Barcelona Biomedical Research Park, Barcelona, Spain","institution_ids":["https://openalex.org/I170486558","https://openalex.org/I2801864671"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100700305","display_name":"Jos\u00e9 Jim\u00e9nez-Luna","orcid":"https://orcid.org/0000-0002-5335-7834"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I2801864671","display_name":"Barcelona Biomedical Research Park","ror":"https://ror.org/05sajct49","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801864671"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 Jim\u00e9nez","raw_affiliation_strings":["Computational Biophysics Laboratory, Universitat Pompeu Fabra, Barcelona Biomedical Research Park, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biophysics Laboratory, Universitat Pompeu Fabra, Barcelona Biomedical Research Park, Barcelona, Spain","institution_ids":["https://openalex.org/I170486558","https://openalex.org/I2801864671"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027026045","display_name":"Gianni De Fabritiis","orcid":"https://orcid.org/0000-0003-3913-4877"},"institutions":[{"id":"https://openalex.org/I11932220","display_name":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats","ror":"https://ror.org/0371hy230","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I11932220"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I2801864671","display_name":"Barcelona Biomedical Research Park","ror":"https://ror.org/05sajct49","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801864671"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Gianni De Fabritiis","raw_affiliation_strings":["Computational Biophysics Laboratory, Universitat Pompeu Fabra, Barcelona Biomedical Research Park, Barcelona, Spain","Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats (ICREA), Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biophysics Laboratory, Universitat Pompeu Fabra, Barcelona Biomedical Research Park, Barcelona, Spain","institution_ids":["https://openalex.org/I170486558","https://openalex.org/I2801864671"]},{"raw_affiliation_string":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats (ICREA), Barcelona, Spain","institution_ids":["https://openalex.org/I11932220"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5027026045"],"corresponding_institution_ids":["https://openalex.org/I11932220","https://openalex.org/I170486558","https://openalex.org/I2801864671"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":5.9479,"has_fulltext":false,"cited_by_count":55,"citation_normalized_percentile":{"value":0.96942969,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"35","issue":"7","first_page":"1237","last_page":"1238"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.913100004196167,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.913100004196167,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.021700000390410423,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.019600000232458115,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8339505791664124},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.8240275382995605},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.756525993347168},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.6409863829612732},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.6020512580871582},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.4634867012500763},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.4573684334754944},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4529092609882355},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.45225006341934204},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3971376419067383},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.21173244714736938}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8339505791664124},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.8240275382995605},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.756525993347168},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.6409863829612732},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.6020512580871582},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.4634867012500763},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.4573684334754944},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4529092609882355},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.45225006341934204},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3971376419067383},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.21173244714736938},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bty758","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty758","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30169549","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30169549","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6200000047683716,"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities"}],"awards":[{"id":"https://openalex.org/G1156025916","display_name":null,"funder_award_id":"MDM\u20102014\u20100370","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G7258449643","display_name":null,"funder_award_id":"BIO2017\u201082628\u2010P","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"}],"funders":[{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1968319881","https://openalex.org/W1985588649","https://openalex.org/W2028629022","https://openalex.org/W2050456292","https://openalex.org/W2076063813","https://openalex.org/W2134967712","https://openalex.org/W2296686360","https://openalex.org/W2502949459","https://openalex.org/W2583907533","https://openalex.org/W2623172571","https://openalex.org/W2784213390","https://openalex.org/W2919115771","https://openalex.org/W2963446712","https://openalex.org/W3104705366"],"related_works":["https://openalex.org/W2059230675","https://openalex.org/W2376003823","https://openalex.org/W4226493464","https://openalex.org/W4312417841","https://openalex.org/W3193565141","https://openalex.org/W3133861977","https://openalex.org/W2594726310","https://openalex.org/W2951211570","https://openalex.org/W3103566983","https://openalex.org/W3167935049"],"abstract_inverted_index":{"SUMMARY:":[0],"Virtual":[1],"screening":[2],"pipelines":[3],"are":[4,111],"one":[5],"of":[6,59,82,84,101],"the":[7,80,91,102],"most":[8],"popular":[9],"used":[10],"tools":[11],"in":[12,31],"structure-based":[13],"drug":[14],"discovery,":[15],"since":[16],"they":[17],"can":[18,19,77],"reduce":[20],"both":[21],"time":[22],"and":[23,88],"cost":[24],"associated":[25],"with":[26,72],"experimental":[27],"assays.":[28],"Recent":[29],"advances":[30],"deep":[32,63],"learning":[33],"methodologies":[34],"have":[35],"shown":[36],"that":[37],"these":[38],"outperform":[39],"classical":[40],"scoring":[41],"functions":[42],"at":[43,86,113],"discriminating":[44],"binder":[45],"protein-ligand":[46],"complexes.":[47],"Here,":[48],"we":[49],"present":[50],"BindScope,":[51],"a":[52,70],"web":[53,104],"application":[54,105],"for":[55],"large-scale":[56],"active-inactive":[57],"classification":[58],"compounds":[60,85],"based":[61],"on":[62,69,79],"convolutional":[64],"neural":[65],"networks.":[66],"Performance":[67],"is":[68,97],"pair":[71],"current":[73],"state-of-the-art":[74],"pipelines.":[75],"Users":[76],"screen":[78],"order":[81],"hundreds":[83],"once":[87],"interactively":[89],"visualize":[90],"results.":[92],"AVAILABILITY":[93],"AND":[94],"IMPLEMENTATION:":[95],"BindScope":[96],"available":[98,112],"as":[99],"part":[100],"PlayMolecule.org":[103],"suite.":[106],"SUPPLEMENTARY":[107],"INFORMATION:":[108],"Supplementary":[109],"data":[110],"Bioinformatics":[114],"online.":[115]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":15},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
