{"id":"https://openalex.org/W2951362868","doi":"https://doi.org/10.1093/bioinformatics/bty747","title":"<i>Dot2dot</i> : accurate whole-genome tandem repeats discovery","display_name":"<i>Dot2dot</i> : accurate whole-genome tandem repeats discovery","publication_year":2018,"publication_date":"2018-08-24","ids":{"openalex":"https://openalex.org/W2951362868","doi":"https://doi.org/10.1093/bioinformatics/bty747","mag":"2951362868","pmid":"https://pubmed.ncbi.nlm.nih.gov/30165507"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty747","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty747","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/6/914/28079301/bty747.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/6/914/28079301/bty747.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046602176","display_name":"Loredana M. Genovese","orcid":null},"institutions":[{"id":"https://openalex.org/I4210130157","display_name":"Institute of Informatics and Telematics","ror":"https://ror.org/02gdcn153","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210130157","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Loredana M Genovese","raw_affiliation_strings":["Institute for Informatics and Telematics, CNR, Pisa, Italy"],"affiliations":[{"raw_affiliation_string":"Institute for Informatics and Telematics, CNR, Pisa, Italy","institution_ids":["https://openalex.org/I4210130157"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019872804","display_name":"Marco M. Mosca","orcid":"https://orcid.org/0000-0002-1764-2814"},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Marco M Mosca","raw_affiliation_strings":["Department of Computer Science, University of Liverpool, Liverpool, UK"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Liverpool, Liverpool, UK","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028551838","display_name":"Marco Pellegrini","orcid":"https://orcid.org/0000-0003-3151-9481"},"institutions":[{"id":"https://openalex.org/I4210106076","display_name":"Istituto di Fisiologia Clinica","ror":"https://ror.org/01kdj2848","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210106076","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210130157","display_name":"Institute of Informatics and Telematics","ror":"https://ror.org/02gdcn153","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210130157","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Pellegrini","raw_affiliation_strings":["Institute for Informatics and Telematics, CNR, Pisa, Italy","Laboratory of Integrative Systems Medicine (LISM), Institute of Informatics and Telematics and Institute of Clinical Physiology, Pisa, Italy"],"affiliations":[{"raw_affiliation_string":"Institute for Informatics and Telematics, CNR, Pisa, Italy","institution_ids":["https://openalex.org/I4210130157"]},{"raw_affiliation_string":"Laboratory of Integrative Systems Medicine (LISM), Institute of Informatics and Telematics and Institute of Clinical Physiology, Pisa, Italy","institution_ids":["https://openalex.org/I4210130157","https://openalex.org/I4210106076"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033343264","display_name":"Filippo Geraci","orcid":"https://orcid.org/0000-0001-6993-6761"},"institutions":[{"id":"https://openalex.org/I4210130157","display_name":"Institute of Informatics and Telematics","ror":"https://ror.org/02gdcn153","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210130157","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Filippo Geraci","raw_affiliation_strings":["Institute for Informatics and Telematics, CNR, Pisa, Italy"],"affiliations":[{"raw_affiliation_string":"Institute for Informatics and Telematics, CNR, Pisa, Italy","institution_ids":["https://openalex.org/I4210130157"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5033343264"],"corresponding_institution_ids":["https://openalex.org/I4210130157"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.9309,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.75254545,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"35","issue":"6","first_page":"914","last_page":"922"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7190622091293335},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5885940194129944},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5688270330429077},{"id":"https://openalex.org/keywords/tandem-repeat","display_name":"Tandem repeat","score":0.5530550479888916},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5307089686393738},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.4868547320365906},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4819647967815399},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.45477670431137085},{"id":"https://openalex.org/keywords/plot","display_name":"Plot (graphics)","score":0.4390118420124054},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.42498916387557983},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4044201672077179},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3523145020008087},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3283487558364868},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.23804959654808044},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22095119953155518},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1952439546585083},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.16582170128822327},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11155161261558533}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7190622091293335},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5885940194129944},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5688270330429077},{"id":"https://openalex.org/C27149982","wikidata":"https://www.wikidata.org/wiki/Q3456514","display_name":"Tandem repeat","level":4,"score":0.5530550479888916},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5307089686393738},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.4868547320365906},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4819647967815399},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.45477670431137085},{"id":"https://openalex.org/C167651023","wikidata":"https://www.wikidata.org/wiki/Q1474611","display_name":"Plot (graphics)","level":2,"score":0.4390118420124054},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.42498916387557983},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4044201672077179},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3523145020008087},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3283487558364868},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.23804959654808044},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22095119953155518},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1952439546585083},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.16582170128822327},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11155161261558533},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020080","descriptor_name":"Tandem Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020080","descriptor_name":"Tandem Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020080","descriptor_name":"Tandem Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bty747","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty747","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/6/914/28079301/bty747.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30165507","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30165507","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:5408842","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6419916","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6419916","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6419916","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty747","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty747","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/6/914/28079301/bty747.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8091430692","display_name":null,"funder_award_id":"(MIUR)","funder_id":"https://openalex.org/F4320321873","funder_display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca"},{"id":"https://openalex.org/G995836306","display_name":null,"funder_award_id":"PRIN 201534HNXC","funder_id":"https://openalex.org/F4320321873","funder_display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca"}],"funders":[{"id":"https://openalex.org/F4320321873","display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca","ror":"https://ror.org/0166hxq48"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2951362868.pdf","grobid_xml":"https://content.openalex.org/works/W2951362868.grobid-xml"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W1568479515","https://openalex.org/W1584998440","https://openalex.org/W1669774184","https://openalex.org/W1975562042","https://openalex.org/W1980973068","https://openalex.org/W1981678846","https://openalex.org/W1985958365","https://openalex.org/W1990604299","https://openalex.org/W1991342096","https://openalex.org/W1992076064","https://openalex.org/W2008575045","https://openalex.org/W2021828702","https://openalex.org/W2035625064","https://openalex.org/W2037606715","https://openalex.org/W2039752257","https://openalex.org/W2043257091","https://openalex.org/W2044148190","https://openalex.org/W2047789345","https://openalex.org/W2053295911","https://openalex.org/W2059053558","https://openalex.org/W2060343359","https://openalex.org/W2060604849","https://openalex.org/W2061980860","https://openalex.org/W2063026409","https://openalex.org/W2072442692","https://openalex.org/W2074231493","https://openalex.org/W2096366535","https://openalex.org/W2097095628","https://openalex.org/W2102007365","https://openalex.org/W2103704875","https://openalex.org/W2108350018","https://openalex.org/W2108871359","https://openalex.org/W2112814753","https://openalex.org/W2113501697","https://openalex.org/W2124281279","https://openalex.org/W2126597349","https://openalex.org/W2129817379","https://openalex.org/W2130396264","https://openalex.org/W2131173813","https://openalex.org/W2132394658","https://openalex.org/W2134084164","https://openalex.org/W2145387500","https://openalex.org/W2149459456","https://openalex.org/W2149588035","https://openalex.org/W2150641734","https://openalex.org/W2154945114","https://openalex.org/W2155508478","https://openalex.org/W2159075303","https://openalex.org/W2159163649","https://openalex.org/W2159934201","https://openalex.org/W2160676512","https://openalex.org/W2161455016","https://openalex.org/W2167084861","https://openalex.org/W2168610667","https://openalex.org/W2607669908","https://openalex.org/W2609153336"],"related_works":["https://openalex.org/W2897156099","https://openalex.org/W2245242553","https://openalex.org/W3041711126","https://openalex.org/W1981338710","https://openalex.org/W4390591638","https://openalex.org/W1977690075","https://openalex.org/W2606639950","https://openalex.org/W3121105173","https://openalex.org/W1548182556","https://openalex.org/W3081644756"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":2}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2019-06-27T00:00:00"}
