{"id":"https://openalex.org/W2762600368","doi":"https://doi.org/10.1093/bioinformatics/bty716","title":"Inferring gene expression networks with hubs using a degree weighted Lasso approach","display_name":"Inferring gene expression networks with hubs using a degree weighted Lasso approach","publication_year":2018,"publication_date":"2018-08-25","ids":{"openalex":"https://openalex.org/W2762600368","doi":"https://doi.org/10.1093/bioinformatics/bty716","mag":"2762600368","pmid":"https://pubmed.ncbi.nlm.nih.gov/30165436"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty716","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty716","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/6/987/48967433/bioinformatics_35_6_987.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/6/987/48967433/bioinformatics_35_6_987.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087121659","display_name":"Nurgazy Sulaimanov","orcid":null},"institutions":[{"id":"https://openalex.org/I31512782","display_name":"Technische Universit\u00e4t Darmstadt","ror":"https://ror.org/05n911h24","country_code":"DE","type":"education","lineage":["https://openalex.org/I31512782"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nurgazy Sulaimanov","raw_affiliation_strings":["Department of Biology, Technische Universit\u00e4t Darmstadt, Darmstadt, Germany","Department of Electrical Engineering and Information Technology, Technische Universit\u00e4t Darmstadt, Darmstadt, Germany","Department of Electrical Engineering & Information Technology Technische Universit\u00e4t Darmstadt Darmstadt Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Technische Universit\u00e4t Darmstadt, Darmstadt, Germany","institution_ids":["https://openalex.org/I31512782"]},{"raw_affiliation_string":"Department of Electrical Engineering and Information Technology, Technische Universit\u00e4t Darmstadt, Darmstadt, Germany","institution_ids":["https://openalex.org/I31512782"]},{"raw_affiliation_string":"Department of Electrical Engineering & Information Technology Technische Universit\u00e4t Darmstadt Darmstadt Germany","institution_ids":["https://openalex.org/I31512782"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100675533","display_name":"Sunil Kumar","orcid":"https://orcid.org/0000-0001-8240-0945"},"institutions":[{"id":"https://openalex.org/I31512782","display_name":"Technische Universit\u00e4t Darmstadt","ror":"https://ror.org/05n911h24","country_code":"DE","type":"education","lineage":["https://openalex.org/I31512782"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sunil Kumar","raw_affiliation_strings":["Department of Biology, Technische Universit\u00e4t Darmstadt, Darmstadt, Germany","Department of Electrical Engineering and Information Technology, Technische Universit\u00e4t Darmstadt, Darmstadt, Germany","Department of Electrical Engineering and Information Technology Technische Universit\u00e4t Darmstadt Darmstadt Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Technische Universit\u00e4t Darmstadt, Darmstadt, Germany","institution_ids":["https://openalex.org/I31512782"]},{"raw_affiliation_string":"Department of Electrical Engineering and Information Technology, Technische Universit\u00e4t Darmstadt, Darmstadt, Germany","institution_ids":["https://openalex.org/I31512782"]},{"raw_affiliation_string":"Department of Electrical Engineering and Information Technology Technische Universit\u00e4t Darmstadt Darmstadt Germany","institution_ids":["https://openalex.org/I31512782"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075167351","display_name":"Fr\u00e9d\u00e9ric Burdet","orcid":"https://orcid.org/0000-0002-2923-827X"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Fr\u00e9d\u00e9ric Burdet","raw_affiliation_strings":["Swiss Institute of Bioinformatics, Lausanne, Switzerland","\u2020Swiss Institute of Bioinformatics, Lausanne, Switzerland;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"\u2020Swiss Institute of Bioinformatics, Lausanne, Switzerland;","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001478163","display_name":"Mark Ibberson","orcid":"https://orcid.org/0000-0003-3152-5670"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Mark Ibberson","raw_affiliation_strings":["Swiss Institute of Bioinformatics, Lausanne, Switzerland","\u2020Swiss Institute of Bioinformatics, Lausanne, Switzerland;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"\u2020Swiss Institute of Bioinformatics, Lausanne, Switzerland;","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006006798","display_name":"Marco Pagni","orcid":"https://orcid.org/0000-0001-9292-9463"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Marco Pagni","raw_affiliation_strings":["Swiss Institute of Bioinformatics, Lausanne, Switzerland","\u2020Swiss Institute of Bioinformatics, Lausanne, Switzerland;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"\u2020Swiss Institute of Bioinformatics, Lausanne, Switzerland;","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070544702","display_name":"Heinz Koeppl","orcid":"https://orcid.org/0000-0002-8305-9379"},"institutions":[{"id":"https://openalex.org/I31512782","display_name":"Technische Universit\u00e4t Darmstadt","ror":"https://ror.org/05n911h24","country_code":"DE","type":"education","lineage":["https://openalex.org/I31512782"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Heinz Koeppl","raw_affiliation_strings":["Department of Biology, Technische Universit\u00e4t Darmstadt, Darmstadt, Germany","Department of Electrical Engineering and Information Technology, Technische Universit\u00e4t Darmstadt, Darmstadt, Germany","Department of Electrical Engineering and Information Technology Technische Universit\u00e4t Darmstadt Darmstadt Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Technische Universit\u00e4t Darmstadt, Darmstadt, Germany","institution_ids":["https://openalex.org/I31512782"]},{"raw_affiliation_string":"Department of Electrical Engineering and Information Technology, Technische Universit\u00e4t Darmstadt, Darmstadt, Germany","institution_ids":["https://openalex.org/I31512782"]},{"raw_affiliation_string":"Department of Electrical Engineering and Information Technology Technische Universit\u00e4t Darmstadt Darmstadt Germany","institution_ids":["https://openalex.org/I31512782"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5070544702"],"corresponding_institution_ids":["https://openalex.org/I31512782"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.00223194,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"35","issue":"6","first_page":"987","last_page":"994"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.3393000066280365,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.3393000066280365,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.23919999599456787,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.10029999911785126,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/lasso","display_name":"Lasso (programming language)","score":0.8063368201255798},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6766203045845032},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6358546018600464},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.5892372727394104},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4622023105621338},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4296518564224243},{"id":"https://openalex.org/keywords/degree","display_name":"Degree (music)","score":0.42695122957229614},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3979564905166626},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.27236974239349365},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24575790762901306},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.17942509055137634},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12053552269935608}],"concepts":[{"id":"https://openalex.org/C37616216","wikidata":"https://www.wikidata.org/wiki/Q3218363","display_name":"Lasso (programming language)","level":2,"score":0.8063368201255798},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6766203045845032},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6358546018600464},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.5892372727394104},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4622023105621338},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4296518564224243},{"id":"https://openalex.org/C2775997480","wikidata":"https://www.wikidata.org/wiki/Q586277","display_name":"Degree (music)","level":2,"score":0.42695122957229614},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3979564905166626},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.27236974239349365},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24575790762901306},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.17942509055137634},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12053552269935608},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/bty716","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty716","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/6/987/48967433/bioinformatics_35_6_987.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30165436","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30165436","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:arXiv.org:1710.01912","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1710.01912","pdf_url":"https://arxiv.org/pdf/1710.01912","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"mag:2762600368","is_oa":true,"landing_page_url":"http://export.arxiv.org/pdf/1710.01912","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"pmh:oai:tubiblio.ulb.tu-darmstadt.de:107045","is_oa":false,"landing_page_url":"https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty716/5085370?guestAccessKey=6b3a63c2-6bda-4593-aa98-e03c4a6d21a9","pdf_url":null,"source":{"id":"https://openalex.org/S4377196390","display_name":"TUbilio (Technical University of Darmstadt)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I31512782","host_organization_name":"Technische Universit\u00e4t Darmstadt","host_organization_lineage":["https://openalex.org/I31512782"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Artikel"},{"id":"doi:10.48550/arxiv.1710.01912","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1710.01912","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty716","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty716","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/6/987/48967433/bioinformatics_35_6_987.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2762600368.pdf","grobid_xml":"https://content.openalex.org/works/W2762600368.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W130254859","https://openalex.org/W1524165063","https://openalex.org/W1526841711","https://openalex.org/W1993948873","https://openalex.org/W2001334414","https://openalex.org/W2008620264","https://openalex.org/W2010824638","https://openalex.org/W2020925091","https://openalex.org/W2026012257","https://openalex.org/W2037187863","https://openalex.org/W2041779820","https://openalex.org/W2052143324","https://openalex.org/W2052815101","https://openalex.org/W2053847776","https://openalex.org/W2072971818","https://openalex.org/W2075490785","https://openalex.org/W2080498142","https://openalex.org/W2090720827","https://openalex.org/W2093269314","https://openalex.org/W2093611896","https://openalex.org/W2103017472","https://openalex.org/W2106895029","https://openalex.org/W2106945333","https://openalex.org/W2107861471","https://openalex.org/W2109384743","https://openalex.org/W2121088981","https://openalex.org/W2121365413","https://openalex.org/W2122825543","https://openalex.org/W2132555912","https://openalex.org/W2132839842","https://openalex.org/W2135046866","https://openalex.org/W2137304236","https://openalex.org/W2185993773","https://openalex.org/W2280966365","https://openalex.org/W2335012284","https://openalex.org/W2557189043","https://openalex.org/W2562162676","https://openalex.org/W4312512934","https://openalex.org/W6656741817","https://openalex.org/W6675870576","https://openalex.org/W6678140679","https://openalex.org/W6684282402"],"related_works":["https://openalex.org/W2963989168","https://openalex.org/W2076149854","https://openalex.org/W3003741176","https://openalex.org/W2123270810","https://openalex.org/W2811224217","https://openalex.org/W3030657512","https://openalex.org/W2981478121","https://openalex.org/W2198778107","https://openalex.org/W1966546718","https://openalex.org/W2231460972","https://openalex.org/W2093808519","https://openalex.org/W3179942648","https://openalex.org/W2108128803","https://openalex.org/W2120748206","https://openalex.org/W3011194305","https://openalex.org/W2995685761","https://openalex.org/W2125964067","https://openalex.org/W2920876032","https://openalex.org/W1570055625","https://openalex.org/W2080023397"],"abstract_inverted_index":{"MOTIVATION:":[0],"Genome-scale":[1],"gene":[2,22,34,86,119],"networks":[3,35,61,87,112],"contain":[4],"regulatory":[5,120],"genes":[6,15,38,145],"called":[7],"hubs":[8,89],"that":[9,135,159],"have":[10],"many":[11],"interaction":[12],"partners.":[13],"These":[14],"usually":[16],"play":[17],"an":[18,200],"essential":[19],"role":[20],"in":[21,30,149,179,186,199],"regulation":[23],"and":[24,56,80,116,146,189,208],"cellular":[25],"processes.":[26],"Despite":[27],"recent":[28],"advancements":[29],"high-throughput":[31,154],"technology,":[32],"inferring":[33,187],"with":[36,88],"hub":[37,60,144,164,188],"from":[39,62,217],"high-dimensional":[40,63],"data":[41,155,204,211,237],"still":[42],"remains":[43],"a":[44,73,104,167],"challenging":[45],"problem.":[46],"Novel":[47],"statistical":[48],"network":[49,98,121,162],"inference":[50],"methods":[51,185],"are":[52,238],"needed":[53],"for":[54],"efficient":[55],"accurate":[57,150],"reconstruction":[58,99],"of":[59,111,130,141,152,175,196,205,212],"data.":[64],"RESULTS:":[65],"To":[66],"address":[67],"this":[68],"challenge":[69],"we":[70,170],"propose":[71],"DW-Lasso,":[72],"degree":[74,110,125],"weighted":[75],"Lasso":[76,183],"(least":[77],"absolute":[78],"shrinkage":[79],"selection":[81],"operator)":[82],"method":[83,133,178,198],"which":[84],"infers":[85],"efficiently":[90],"under":[91,156],"the":[92,109,118,131,139,153,157,160,176,194,227],"low":[93],"sample":[94],"size":[95],"setting.":[96],"Our":[97],"approach":[100],"is":[101,113,122,134],"formulated":[102],"as":[103],"two":[105],"stage":[106],"procedure:":[107],"first,":[108],"estimated":[114],"iteratively,":[115],"second,":[117],"reconstructed":[123],"using":[124],"information.":[126],"A":[127],"useful":[128],"property":[129],"proposed":[132,177],"it":[136],"naturally":[137],"favors":[138],"accumulation":[140],"neighbors":[142],"around":[143],"thereby":[147],"helps":[148],"modeling":[151],"assumption":[158],"underlying":[161],"exhibits":[163],"structure.":[165],"In":[166],"simulation":[168],"study,":[169],"demonstrate":[171],"good":[172],"predictive":[173],"performance":[174],"comparison":[180],"to":[181,202],"traditional":[182],"type":[184],"scale-free":[190],"graphs.":[191],"We":[192],"show":[193],"effectiveness":[195],"our":[197],"application":[201],"microarray":[203],"Escherichia":[206],"coli":[207],"RNA":[209],"sequencing":[210],"Kidney":[213],"Clear":[214],"Cell":[215],"Carcinoma":[216],"The":[218],"Cancer":[219],"Genome":[220],"Atlas":[221],"datasets.":[222],"AVAILABILITY":[223],"AND":[224],"IMPLEMENTATION:":[225],"Under":[226],"GNU":[228],"General":[229],"Public":[230],"Licence":[231],"at":[232,240],"https://cran.r-project.org/package=DWLasso.":[233],"SUPPLEMENTARY":[234],"INFORMATION:":[235],"Supplementary":[236],"available":[239],"Bioinformatics":[241],"online.":[242]},"counts_by_year":[{"year":2023,"cited_by_count":1}],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}
