{"id":"https://openalex.org/W2887999633","doi":"https://doi.org/10.1093/bioinformatics/bty711","title":"WIlsON: Web-based Interactive Omics VisualizatioN","display_name":"WIlsON: Web-based Interactive Omics VisualizatioN","publication_year":2018,"publication_date":"2018-08-22","ids":{"openalex":"https://openalex.org/W2887999633","doi":"https://doi.org/10.1093/bioinformatics/bty711","mag":"2887999633","pmid":"https://pubmed.ncbi.nlm.nih.gov/30535135"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty711","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty711","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/6/1055/28079227/bty711.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/6/1055/28079227/bty711.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057497094","display_name":"Hendrik Schultheis","orcid":"https://orcid.org/0000-0001-8447-813X"},"institutions":[{"id":"https://openalex.org/I4210102801","display_name":"Max Planck Institute for Heart and Lung Research","ror":"https://ror.org/0165r2y73","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210102801"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hendrik Schultheis","raw_affiliation_strings":["Max Planck Institute for Heart and Lung Research, Bioinformatics Core Unit (BCU), 61231 Bad Nauheim, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute for Heart and Lung Research, Bioinformatics Core Unit (BCU), 61231 Bad Nauheim, Germany","institution_ids":["https://openalex.org/I4210102801"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062311076","display_name":"Carsten Kuenne","orcid":"https://orcid.org/0000-0001-8013-5906"},"institutions":[{"id":"https://openalex.org/I4210102801","display_name":"Max Planck Institute for Heart and Lung Research","ror":"https://ror.org/0165r2y73","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210102801"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Carsten Kuenne","raw_affiliation_strings":["Max Planck Institute for Heart and Lung Research, Bioinformatics Core Unit (BCU), 61231 Bad Nauheim, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute for Heart and Lung Research, Bioinformatics Core Unit (BCU), 61231 Bad Nauheim, Germany","institution_ids":["https://openalex.org/I4210102801"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032419793","display_name":"Jens Preussner","orcid":"https://orcid.org/0000-0003-1927-3458"},"institutions":[{"id":"https://openalex.org/I4210102801","display_name":"Max Planck Institute for Heart and Lung Research","ror":"https://ror.org/0165r2y73","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210102801"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jens Preussner","raw_affiliation_strings":["Max Planck Institute for Heart and Lung Research, Bioinformatics Core Unit (BCU), 61231 Bad Nauheim, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute for Heart and Lung Research, Bioinformatics Core Unit (BCU), 61231 Bad Nauheim, Germany","institution_ids":["https://openalex.org/I4210102801"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062967049","display_name":"Ren\u00e9 Wiegandt","orcid":"https://orcid.org/0000-0002-5921-8413"},"institutions":[{"id":"https://openalex.org/I4210102801","display_name":"Max Planck Institute for Heart and Lung Research","ror":"https://ror.org/0165r2y73","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210102801"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Rene Wiegandt","raw_affiliation_strings":["Max Planck Institute for Heart and Lung Research, Bioinformatics Core Unit (BCU), 61231 Bad Nauheim, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute for Heart and Lung Research, Bioinformatics Core Unit (BCU), 61231 Bad Nauheim, Germany","institution_ids":["https://openalex.org/I4210102801"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010295837","display_name":"Annika Fust","orcid":"https://orcid.org/0000-0002-9638-9713"},"institutions":[{"id":"https://openalex.org/I4210102801","display_name":"Max Planck Institute for Heart and Lung Research","ror":"https://ror.org/0165r2y73","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210102801"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Annika Fust","raw_affiliation_strings":["Max Planck Institute for Heart and Lung Research, Bioinformatics Core Unit (BCU), 61231 Bad Nauheim, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute for Heart and Lung Research, Bioinformatics Core Unit (BCU), 61231 Bad Nauheim, Germany","institution_ids":["https://openalex.org/I4210102801"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019289123","display_name":"Mette Bentsen","orcid":"https://orcid.org/0000-0002-8016-0199"},"institutions":[{"id":"https://openalex.org/I4210102801","display_name":"Max Planck Institute for Heart and Lung Research","ror":"https://ror.org/0165r2y73","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210102801"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Mette Bentsen","raw_affiliation_strings":["Max Planck Institute for Heart and Lung Research, Bioinformatics Core Unit (BCU), 61231 Bad Nauheim, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute for Heart and Lung Research, Bioinformatics Core Unit (BCU), 61231 Bad Nauheim, Germany","institution_ids":["https://openalex.org/I4210102801"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086382797","display_name":"Mario Looso","orcid":"https://orcid.org/0000-0003-1495-9530"},"institutions":[{"id":"https://openalex.org/I4210102801","display_name":"Max Planck Institute for Heart and Lung Research","ror":"https://ror.org/0165r2y73","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210102801"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Mario Looso","raw_affiliation_strings":["Max Planck Institute for Heart and Lung Research, Bioinformatics Core Unit (BCU), 61231 Bad Nauheim, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute for Heart and Lung Research, Bioinformatics Core Unit (BCU), 61231 Bad Nauheim, Germany","institution_ids":["https://openalex.org/I4210102801"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5086382797"],"corresponding_institution_ids":["https://openalex.org/I4210102801"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.8044,"has_fulltext":false,"cited_by_count":36,"citation_normalized_percentile":{"value":0.85752419,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"35","issue":"6","first_page":"1055","last_page":"1057"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.1421000063419342,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.1421000063419342,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.11599999666213989,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.10209999978542328,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7416412830352783},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6493582129478455},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.49474093317985535},{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.45854121446609497},{"id":"https://openalex.org/keywords/interactive-visualization","display_name":"Interactive visualization","score":0.4431436061859131},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.35930773615837097},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3297988474369049},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2776672840118408},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.21836987137794495},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21714404225349426}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7416412830352783},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6493582129478455},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.49474093317985535},{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.45854121446609497},{"id":"https://openalex.org/C64073096","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Interactive visualization","level":3,"score":0.4431436061859131},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.35930773615837097},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3297988474369049},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2776672840118408},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.21836987137794495},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21714404225349426}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/bty711","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty711","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/6/1055/28079227/bty711.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30535135","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30535135","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:5408828","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6419899","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6419899","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6419899","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.mpg.de:item_3242205","is_oa":false,"landing_page_url":"http://hdl.handle.net/21.11116/0000-0006-AD5A-3","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BIOINFORMATICS","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty711","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty711","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/6/1055/28079227/bty711.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.46000000834465027,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G12182209","display_name":null,"funder_award_id":"KLIFO309","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320322434","display_name":"Max-Planck-Gesellschaft","ror":"https://ror.org/01hhn8329"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W563831329","https://openalex.org/W2080752012","https://openalex.org/W2179438025","https://openalex.org/W2183727528","https://openalex.org/W2527533149","https://openalex.org/W2544360569","https://openalex.org/W2615522584","https://openalex.org/W2766620140","https://openalex.org/W2770731691","https://openalex.org/W6746247885"],"related_works":["https://openalex.org/W2006240110","https://openalex.org/W2909972699","https://openalex.org/W2039602384","https://openalex.org/W2751110224","https://openalex.org/W1966357780","https://openalex.org/W2496664377","https://openalex.org/W2288407995","https://openalex.org/W2147036980","https://openalex.org/W304756206","https://openalex.org/W4312613920"],"abstract_inverted_index":{"MOTIVATION:":[0],"High":[1],"throughput":[2],"(HT)":[3],"screens":[4],"in":[5,121],"the":[6,36,82,129,138,155],"omics":[7,96],"field":[8],"are":[9,32,160],"typically":[10],"analyzed":[11],"by":[12,86],"automated":[13],"pipelines":[14],"that":[15],"generate":[16,112],"static":[17],"visualizations":[18],"and":[19,27,47,60,104,111,132,171],"comprehensive":[20],"spreadsheet":[21],"data":[22,30],"for":[23,45,58],"scientists.":[24],"However,":[25],"exploratory":[26],"hypothesis":[28],"driven":[29],"analysis":[31,59],"key":[33],"aspects":[34],"of":[35,38,62,95,137,158],"understanding":[37],"biological":[39],"systems,":[40],"both":[41],"generating":[42],"extensive":[43],"need":[44],"customized":[46],"dynamic":[48],"visualization.":[49],"RESULTS:":[50],"Here":[51],"we":[52],"describe":[53],"WIlsON,":[54],"an":[55,87],"interactive":[56,139],"workbench":[57,140],"visualization":[61],"multi-omics":[63],"data.":[64],"It":[65],"is":[66],"primarily":[67],"intended":[68],"to":[69,73,76,81,108],"empower":[70],"screening":[71],"platforms":[72],"offer":[74],"access":[75],"pre-calculated":[77],"HT":[78],"screen":[79],"results":[80,99],"non-computational":[83],"scientist.":[84],"Facilitated":[85],"open":[88],"file":[89],"format,":[90],"WIlsON":[91,120,159],"supports":[92],"all":[93],"types":[94],"screens,":[97],"serves":[98],"via":[100],"a":[101,124],"web-based":[102],"dashboard,":[103],"enables":[105],"end":[106],"users":[107],"perform":[109],"analyses":[110],"publication-ready":[113],"plots.":[114],"AVAILABILITY":[115],"AND":[116],"IMPLEMENTATION:":[117],"We":[118],"implemented":[119],"R":[122],"with":[123],"focus":[125],"on":[126],"extensibility":[127],"using":[128],"modular":[130],"Shiny":[131],"Plotly":[133],"frameworks.":[134],"A":[135,148],"demo":[136],"without":[141],"limitations":[142],"may":[143],"be":[144],"accessed":[145],"at":[146],"http://loosolab.mpi-bn.mpg.de.":[147],"standalone":[149],"Docker":[150,165],"container":[151],"as":[152,154],"well":[153],"source":[156],"code":[157],"freely":[161],"available":[162],"from":[163],"our":[164],"hub":[166],"https://hub.docker.":[167],"com/r/loosolab/wilson,":[168],"CRAN":[169],"https://cran.r-project.org/web/packages/wilson/,":[170],"GitHub":[172],"repository":[173],"https://github.molgen.mpg.de/loosolab/wilson-apps,":[174],"respectively.":[175]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
