{"id":"https://openalex.org/W2888944590","doi":"https://doi.org/10.1093/bioinformatics/bty702","title":"Parallel clustering of single cell transcriptomic data with split-merge sampling on Dirichlet process mixtures","display_name":"Parallel clustering of single cell transcriptomic data with split-merge sampling on Dirichlet process mixtures","publication_year":2018,"publication_date":"2018-08-22","ids":{"openalex":"https://openalex.org/W2888944590","doi":"https://doi.org/10.1093/bioinformatics/bty702","mag":"2888944590","pmid":"https://pubmed.ncbi.nlm.nih.gov/30165477"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty702","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty702","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/6/953/28079258/bty702.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/6/953/28079258/bty702.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024023588","display_name":"Tiehang Duan","orcid":"https://orcid.org/0000-0003-4323-642X"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Tiehang Duan","raw_affiliation_strings":["Department of Computer Science, University of California, Irvine, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California, Irvine, CA, USA","institution_ids":["https://openalex.org/I204250578"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066204308","display_name":"Jos\u00e9 Pinto","orcid":"https://orcid.org/0000-0001-8682-7559"},"institutions":[{"id":"https://openalex.org/I71503853","display_name":"University of Algarve","ror":"https://ror.org/014g34x36","country_code":"PT","type":"education","lineage":["https://openalex.org/I71503853"]},{"id":"https://openalex.org/I4210121181","display_name":"Algarve Biomedical Center","ror":"https://ror.org/02rgrnk13","country_code":"PT","type":"facility","lineage":["https://openalex.org/I4210121181"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 P Pinto","raw_affiliation_strings":["SysBioLab, Centre for Biomedical Research (CBMR), University of Algarve, Faro, Algarve, Portugal"],"affiliations":[{"raw_affiliation_string":"SysBioLab, Centre for Biomedical Research (CBMR), University of Algarve, Faro, Algarve, Portugal","institution_ids":["https://openalex.org/I4210121181","https://openalex.org/I71503853"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084618257","display_name":"Xiaohui Xie","orcid":"https://orcid.org/0000-0002-5479-6345"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Xiaohui Xie","raw_affiliation_strings":["Department of Computer Science, University of California, Irvine, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California, Irvine, CA, USA","institution_ids":["https://openalex.org/I204250578"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5024023588","https://openalex.org/A5084618257"],"corresponding_institution_ids":["https://openalex.org/I204250578"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.6922,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.88255219,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"35","issue":"6","first_page":"953","last_page":"961"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11901","display_name":"Bayesian Methods and Mixture Models","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11901","display_name":"Bayesian Methods and Mixture Models","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9890000224113464,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8260499835014343},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7662909030914307},{"id":"https://openalex.org/keywords/merge","display_name":"Merge (version control)","score":0.699376106262207},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5751767754554749},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5381075143814087},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.49513116478919983},{"id":"https://openalex.org/keywords/hierarchical-dirichlet-process","display_name":"Hierarchical Dirichlet process","score":0.4722261428833008},{"id":"https://openalex.org/keywords/sampling","display_name":"Sampling (signal processing)","score":0.43794065713882446},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.43298447132110596},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.34274768829345703},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.23495373129844666},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.19557291269302368},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17574962973594666},{"id":"https://openalex.org/keywords/topic-model","display_name":"Topic model","score":0.17226049304008484},{"id":"https://openalex.org/keywords/latent-dirichlet-allocation","display_name":"Latent Dirichlet allocation","score":0.1635342836380005}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8260499835014343},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7662909030914307},{"id":"https://openalex.org/C197129107","wikidata":"https://www.wikidata.org/wiki/Q1921621","display_name":"Merge (version control)","level":2,"score":0.699376106262207},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5751767754554749},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5381075143814087},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.49513116478919983},{"id":"https://openalex.org/C141318989","wikidata":"https://www.wikidata.org/wiki/Q5753066","display_name":"Hierarchical Dirichlet process","level":4,"score":0.4722261428833008},{"id":"https://openalex.org/C140779682","wikidata":"https://www.wikidata.org/wiki/Q210868","display_name":"Sampling (signal processing)","level":3,"score":0.43794065713882446},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.43298447132110596},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.34274768829345703},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.23495373129844666},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.19557291269302368},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17574962973594666},{"id":"https://openalex.org/C171686336","wikidata":"https://www.wikidata.org/wiki/Q3532085","display_name":"Topic model","level":2,"score":0.17226049304008484},{"id":"https://openalex.org/C500882744","wikidata":"https://www.wikidata.org/wiki/Q269236","display_name":"Latent Dirichlet allocation","level":3,"score":0.1635342836380005},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bty702","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty702","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/6/953/28079258/bty702.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30165477","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30165477","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:arXiv.org:1812.10048","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1812.10048","pdf_url":"https://arxiv.org/pdf/1812.10048","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:sapientia.ualg.pt:10400.1/12472","is_oa":true,"landing_page_url":"http://hdl.handle.net/10400.1/12472","pdf_url":null,"source":{"id":"https://openalex.org/S4306402433","display_name":"Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty702","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty702","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/6/953/28079258/bty702.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306164","display_name":"Simons Foundation","ror":"https://ror.org/01cmst727"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2888944590.pdf","grobid_xml":"https://content.openalex.org/works/W2888944590.grobid-xml"},"referenced_works_count":58,"referenced_works":["https://openalex.org/W29489373","https://openalex.org/W197646968","https://openalex.org/W1532325895","https://openalex.org/W1594223874","https://openalex.org/W1813068103","https://openalex.org/W1833498382","https://openalex.org/W1880262756","https://openalex.org/W1971807270","https://openalex.org/W2011832962","https://openalex.org/W2040184894","https://openalex.org/W2069089843","https://openalex.org/W2072169887","https://openalex.org/W2080972498","https://openalex.org/W2084942072","https://openalex.org/W2091797506","https://openalex.org/W2100231460","https://openalex.org/W2101998432","https://openalex.org/W2109890799","https://openalex.org/W2118036030","https://openalex.org/W2125858773","https://openalex.org/W2127498532","https://openalex.org/W2128032727","https://openalex.org/W2136796925","https://openalex.org/W2161160262","https://openalex.org/W2165874743","https://openalex.org/W2188193460","https://openalex.org/W2188284163","https://openalex.org/W2193667971","https://openalex.org/W2306630387","https://openalex.org/W2395355800","https://openalex.org/W2502666694","https://openalex.org/W2519794569","https://openalex.org/W2598326928","https://openalex.org/W2606771561","https://openalex.org/W2616922646","https://openalex.org/W2767802401","https://openalex.org/W2902323877","https://openalex.org/W2912500072","https://openalex.org/W2949685357","https://openalex.org/W2949787092","https://openalex.org/W2950074876","https://openalex.org/W2951506174","https://openalex.org/W2952303649","https://openalex.org/W2952362302","https://openalex.org/W2953043409","https://openalex.org/W2953251392","https://openalex.org/W2999905431","https://openalex.org/W3101455611","https://openalex.org/W3145269374","https://openalex.org/W4213009331","https://openalex.org/W4231510805","https://openalex.org/W4235169531","https://openalex.org/W4237780050","https://openalex.org/W4254499902","https://openalex.org/W6639619044","https://openalex.org/W6679842528","https://openalex.org/W6686667082","https://openalex.org/W6745794782"],"related_works":["https://openalex.org/W2058965144","https://openalex.org/W2164382479","https://openalex.org/W2146343568","https://openalex.org/W98480971","https://openalex.org/W2150291671","https://openalex.org/W2013643406","https://openalex.org/W2027972911","https://openalex.org/W2097707447","https://openalex.org/W57376053","https://openalex.org/W2113037082"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":4}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}