{"id":"https://openalex.org/W2887749901","doi":"https://doi.org/10.1093/bioinformatics/bty695","title":"Genome Detective: an automated system for virus identification from high-throughput sequencing data","display_name":"Genome Detective: an automated system for virus identification from high-throughput sequencing data","publication_year":2018,"publication_date":"2018-08-14","ids":{"openalex":"https://openalex.org/W2887749901","doi":"https://doi.org/10.1093/bioinformatics/bty695","mag":"2887749901","pmid":"https://pubmed.ncbi.nlm.nih.gov/30124794"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty695","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty695","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/5/871/28666375/bty695.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/5/871/28666375/bty695.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067755798","display_name":"Michael Vilsker","orcid":null},"institutions":[{"id":"https://openalex.org/I4210130072","display_name":"Emweb (Belgium)","ror":"https://ror.org/03800bc44","country_code":"BE","type":"company","lineage":["https://openalex.org/I4210130072"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Michael Vilsker","raw_affiliation_strings":["Emweb bvba, Herent, Belgium"],"affiliations":[{"raw_affiliation_string":"Emweb bvba, Herent, Belgium","institution_ids":["https://openalex.org/I4210130072"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057923424","display_name":"Yumna Moosa","orcid":null},"institutions":[{"id":"https://openalex.org/I95023434","display_name":"University of KwaZulu-Natal","ror":"https://ror.org/04qzfn040","country_code":"ZA","type":"education","lineage":["https://openalex.org/I95023434"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Yumna Moosa","raw_affiliation_strings":["KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine and Medical Sciences, Nelson R Mandela School of Medicine, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa"],"affiliations":[{"raw_affiliation_string":"KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine and Medical Sciences, Nelson R Mandela School of Medicine, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa","institution_ids":["https://openalex.org/I95023434"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071568663","display_name":"Sam Nooij","orcid":"https://orcid.org/0000-0001-5892-5637"},"institutions":[{"id":"https://openalex.org/I4210104433","display_name":"National Institute for Public Health and the Environment","ror":"https://ror.org/01cesdt21","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210104433"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Sam Nooij","raw_affiliation_strings":["The Dutch National Institute for Public Health and the Environment (RIVM), Bilthoven, The Netherlands"],"affiliations":[{"raw_affiliation_string":"The Dutch National Institute for Public Health and the Environment (RIVM), Bilthoven, The Netherlands","institution_ids":["https://openalex.org/I4210104433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077566266","display_name":"Vagner Fonseca","orcid":"https://orcid.org/0000-0001-5521-6448"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]},{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]},{"id":"https://openalex.org/I95023434","display_name":"University of KwaZulu-Natal","ror":"https://ror.org/04qzfn040","country_code":"ZA","type":"education","lineage":["https://openalex.org/I95023434"]}],"countries":["BR","ZA"],"is_corresponding":false,"raw_author_name":"Vagner Fonseca","raw_affiliation_strings":["Instituto de Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brazil","KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine and Medical Sciences, Nelson R Mandela School of Medicine, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa","Laboratory of Hematology Genetic and computational Biology, Goncalo Moniz Research Center, Oswaldo Cruz Foundation (LHGB/CPqGM/FIOCRUZ), Bahia, Brazil"],"affiliations":[{"raw_affiliation_string":"Instituto de Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brazil","institution_ids":["https://openalex.org/I110200422"]},{"raw_affiliation_string":"KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine and Medical Sciences, Nelson R Mandela School of Medicine, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa","institution_ids":["https://openalex.org/I95023434"]},{"raw_affiliation_string":"Laboratory of Hematology Genetic and computational Biology, Goncalo Moniz Research Center, Oswaldo Cruz Foundation (LHGB/CPqGM/FIOCRUZ), Bahia, Brazil","institution_ids":["https://openalex.org/I52325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029722492","display_name":"Yoika Ghysens","orcid":null},"institutions":[{"id":"https://openalex.org/I4210130072","display_name":"Emweb (Belgium)","ror":"https://ror.org/03800bc44","country_code":"BE","type":"company","lineage":["https://openalex.org/I4210130072"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Yoika Ghysens","raw_affiliation_strings":["Emweb bvba, Herent, Belgium"],"affiliations":[{"raw_affiliation_string":"Emweb bvba, Herent, Belgium","institution_ids":["https://openalex.org/I4210130072"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052886182","display_name":"Korneel Dumon","orcid":null},"institutions":[{"id":"https://openalex.org/I4210130072","display_name":"Emweb (Belgium)","ror":"https://ror.org/03800bc44","country_code":"BE","type":"company","lineage":["https://openalex.org/I4210130072"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Korneel Dumon","raw_affiliation_strings":["Emweb bvba, Herent, Belgium"],"affiliations":[{"raw_affiliation_string":"Emweb bvba, Herent, Belgium","institution_ids":["https://openalex.org/I4210130072"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004886223","display_name":"Raf Pauwels","orcid":null},"institutions":[{"id":"https://openalex.org/I4210130072","display_name":"Emweb (Belgium)","ror":"https://ror.org/03800bc44","country_code":"BE","type":"company","lineage":["https://openalex.org/I4210130072"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Raf Pauwels","raw_affiliation_strings":["Emweb bvba, Herent, Belgium"],"affiliations":[{"raw_affiliation_string":"Emweb bvba, Herent, Belgium","institution_ids":["https://openalex.org/I4210130072"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071835363","display_name":"Lu\u00edz Carlos J\u00fanior Alc\u00e2ntara","orcid":"https://orcid.org/0000-0002-6769-9931"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]},{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Luiz Carlos Alcantara","raw_affiliation_strings":["Instituto de Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brazil","Laboratory of Hematology Genetic and computational Biology, Goncalo Moniz Research Center, Oswaldo Cruz Foundation (LHGB/CPqGM/FIOCRUZ), Bahia, Brazil","Laborat\u00f3rio de Flaviv\u00edrus, IOC, Funda\u00e7\u00e3o Oswaldo Cruz"],"affiliations":[{"raw_affiliation_string":"Instituto de Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brazil","institution_ids":["https://openalex.org/I110200422"]},{"raw_affiliation_string":"Laboratory of Hematology Genetic and computational Biology, Goncalo Moniz Research Center, Oswaldo Cruz Foundation (LHGB/CPqGM/FIOCRUZ), Bahia, Brazil","institution_ids":["https://openalex.org/I52325"]},{"raw_affiliation_string":"Laborat\u00f3rio de Flaviv\u00edrus, IOC, Funda\u00e7\u00e3o Oswaldo Cruz","institution_ids":["https://openalex.org/I52325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064944553","display_name":"Ewout Vanden Eynden","orcid":null},"institutions":[{"id":"https://openalex.org/I24156275","display_name":"Rega Institute for Medical Research","ror":"https://ror.org/03w5j8p12","country_code":"BE","type":"facility","lineage":["https://openalex.org/I24156275"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Ewout Vanden Eynden","raw_affiliation_strings":["KU Leuven, Department of Microbiology and Immunology, Rega Institute for Medical Research, Clinical and Epidemiological Virology, Leuven, Belgium"],"affiliations":[{"raw_affiliation_string":"KU Leuven, Department of Microbiology and Immunology, Rega Institute for Medical Research, Clinical and Epidemiological Virology, Leuven, Belgium","institution_ids":["https://openalex.org/I24156275","https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065034994","display_name":"Anne\u2013Mieke Vandamme","orcid":"https://orcid.org/0000-0002-6594-2766"},"institutions":[{"id":"https://openalex.org/I24156275","display_name":"Rega Institute for Medical Research","ror":"https://ror.org/03w5j8p12","country_code":"BE","type":"facility","lineage":["https://openalex.org/I24156275"]},{"id":"https://openalex.org/I83558840","display_name":"Universidade Nova de Lisboa","ror":"https://ror.org/02xankh89","country_code":"PT","type":"education","lineage":["https://openalex.org/I83558840"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE","PT"],"is_corresponding":false,"raw_author_name":"Anne-Mieke Vandamme","raw_affiliation_strings":["Center for Global Health and Tropical Medicine, Unidade de Microbiologia, Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa, Lisbon, Portugal","KU Leuven, Department of Microbiology and Immunology, Rega Institute for Medical Research, Clinical and Epidemiological Virology, Leuven, Belgium"],"affiliations":[{"raw_affiliation_string":"Center for Global Health and Tropical Medicine, Unidade de Microbiologia, Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa, Lisbon, Portugal","institution_ids":["https://openalex.org/I83558840"]},{"raw_affiliation_string":"KU Leuven, Department of Microbiology and Immunology, Rega Institute for Medical Research, Clinical and Epidemiological Virology, Leuven, Belgium","institution_ids":["https://openalex.org/I24156275","https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081337249","display_name":"Koen Deforche","orcid":"https://orcid.org/0000-0003-3898-9494"},"institutions":[{"id":"https://openalex.org/I4210130072","display_name":"Emweb (Belgium)","ror":"https://ror.org/03800bc44","country_code":"BE","type":"company","lineage":["https://openalex.org/I4210130072"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Koen Deforche","raw_affiliation_strings":["Emweb bvba, Herent, Belgium"],"affiliations":[{"raw_affiliation_string":"Emweb bvba, Herent, Belgium","institution_ids":["https://openalex.org/I4210130072"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051373841","display_name":"T\u00falio de Oliveira","orcid":"https://orcid.org/0000-0002-3027-5254"},"institutions":[{"id":"https://openalex.org/I95023434","display_name":"University of KwaZulu-Natal","ror":"https://ror.org/04qzfn040","country_code":"ZA","type":"education","lineage":["https://openalex.org/I95023434"]}],"countries":["ZA"],"is_corresponding":true,"raw_author_name":"Tulio de Oliveira","raw_affiliation_strings":["KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine and Medical Sciences, Nelson R Mandela School of Medicine, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa"],"affiliations":[{"raw_affiliation_string":"KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine and Medical Sciences, Nelson R Mandela School of Medicine, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa","institution_ids":["https://openalex.org/I95023434"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5051373841","https://openalex.org/A5081337249"],"corresponding_institution_ids":["https://openalex.org/I4210130072","https://openalex.org/I95023434"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":23.4733,"has_fulltext":true,"cited_by_count":428,"citation_normalized_percentile":{"value":0.99734779,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"35","issue":"5","first_page":"871","last_page":"873"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7549941539764404},{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.7346686720848083},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6565214991569519},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6425400376319885},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.6126444339752197},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6110556125640869},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.5141058564186096},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48353147506713867},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.41868856549263},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36346131563186646},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3281328082084656},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21775099635124207},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.18460550904273987},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14548331499099731},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10258600115776062}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7549941539764404},{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.7346686720848083},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6565214991569519},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6425400376319885},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.6126444339752197},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6110556125640869},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5141058564186096},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48353147506713867},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.41868856549263},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36346131563186646},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3281328082084656},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21775099635124207},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.18460550904273987},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14548331499099731},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10258600115776062},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":9,"locations":[{"id":"doi:10.1093/bioinformatics/bty695","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty695","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/5/871/28666375/bty695.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30124794","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30124794","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:lirias2repo.kuleuven.be:123456789/635380","is_oa":true,"landing_page_url":"https://lirias.kuleuven.be/handle/123456789/635380","pdf_url":null,"source":{"id":"https://openalex.org/S7407055369","display_name":"Lirias","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Bioinformatics, vol. 35 (5), Art.No. 5, (871-873)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:americanae.aecid.es:2324300","is_oa":true,"landing_page_url":"http://americanae.aecid.es/americanae/es/registros/registro.do?tipoRegistro=MTD&idBib=2324300","pdf_url":null,"source":{"id":"https://openalex.org/S4306400786","display_name":"Americanae (AECID Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:Reposit\u00f3rio Institucional da FIOCRUZ (ARCA)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:arca.fiocruz.br:icict/29703","is_oa":true,"landing_page_url":"https://arca.fiocruz.br/handle/icict/29703","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"instacron:FIOCRUZ","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6524403","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6524403","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:rivm.openrepository.com:10029/622223","is_oa":false,"landing_page_url":"http://hdl.handle.net/10029/622223","pdf_url":null,"source":{"id":"https://openalex.org/S4306401814","display_name":"Rivm Repository (Netherlands National Institute for Public Health and the Environment)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210104433","host_organization_name":"National Institute for Public Health and the Environment","host_organization_lineage":["https://openalex.org/I4210104433"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:rivm.openrepository.com:10029/651726","is_oa":false,"landing_page_url":"https://rivm.openrepository.com/handle/10029/651726","pdf_url":null,"source":{"id":"https://openalex.org/S4306401681","display_name":"Rivm (National Institute for Public Health and the Environment)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210104433","host_organization_name":"National Institute for Public Health and the Environment","host_organization_lineage":["https://openalex.org/I4210104433"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:www.arca.fiocruz.br:icict/29703","is_oa":true,"landing_page_url":"https://www.arca.fiocruz.br/handle/icict/29703","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:Reposit\u00f3rio Institucional da FIOCRUZ (ARCA)","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty695","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty695","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/5/871/28666375/bty695.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6674014746","display_name":null,"funder_award_id":"MRC-RFA-UFSP-01-2013/UKZN HIVEPI","funder_id":"https://openalex.org/F4320320672","funder_display_name":"South African Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320320672","display_name":"South African Medical Research Council","ror":"https://ror.org/05q60vz69"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2887749901.pdf","grobid_xml":"https://content.openalex.org/works/W2887749901.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W2045204781","https://openalex.org/W2068448872","https://openalex.org/W2087064593","https://openalex.org/W2103441770","https://openalex.org/W2110233077","https://openalex.org/W2120902911","https://openalex.org/W2128260028","https://openalex.org/W2131271579","https://openalex.org/W2137662380","https://openalex.org/W2264969613","https://openalex.org/W2328346769","https://openalex.org/W2410580207","https://openalex.org/W2504173038","https://openalex.org/W2596392831","https://openalex.org/W2623802615","https://openalex.org/W2752517304","https://openalex.org/W2762331921"],"related_works":["https://openalex.org/W1992950355","https://openalex.org/W4381279187","https://openalex.org/W2115108201","https://openalex.org/W2013063066","https://openalex.org/W4283384467","https://openalex.org/W2921363728","https://openalex.org/W2279684808","https://openalex.org/W2909852840","https://openalex.org/W3217304749","https://openalex.org/W2066142713"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":9},{"year":2025,"cited_by_count":68},{"year":2024,"cited_by_count":83},{"year":2023,"cited_by_count":75},{"year":2022,"cited_by_count":73},{"year":2021,"cited_by_count":67},{"year":2020,"cited_by_count":40},{"year":2019,"cited_by_count":13}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
