{"id":"https://openalex.org/W2887352627","doi":"https://doi.org/10.1093/bioinformatics/bty693","title":"PathwayConnector: finding complementary pathways to enhance functional analysis","display_name":"PathwayConnector: finding complementary pathways to enhance functional analysis","publication_year":2018,"publication_date":"2018-08-13","ids":{"openalex":"https://openalex.org/W2887352627","doi":"https://doi.org/10.1093/bioinformatics/bty693","mag":"2887352627","pmid":"https://pubmed.ncbi.nlm.nih.gov/30124768"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty693","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty693","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/5/889/48966127/bioinformatics_35_5_889.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/5/889/48966127/bioinformatics_35_5_889.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025440739","display_name":"George Minadakis","orcid":"https://orcid.org/0000-0002-7752-2208"},"institutions":[{"id":"https://openalex.org/I55905543","display_name":"Cyprus Institute of Neurology and Genetics","ror":"https://ror.org/01ggsp920","country_code":"CY","type":"nonprofit","lineage":["https://openalex.org/I55905543"]}],"countries":["CY"],"is_corresponding":true,"raw_author_name":"George Minadakis","raw_affiliation_strings":["Bioinformatics Group, Bioinformatics ERA Chair, The Cyprus Institute of Neurology & Genetics, 6 International Airport Avenue, 2370 Nicosia, Cyprus, Nicosia, Cyprus"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Bioinformatics ERA Chair, The Cyprus Institute of Neurology & Genetics, 6 International Airport Avenue, 2370 Nicosia, Cyprus, Nicosia, Cyprus","institution_ids":["https://openalex.org/I55905543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002248161","display_name":"Margarita Zachariou","orcid":"https://orcid.org/0000-0001-8950-4077"},"institutions":[{"id":"https://openalex.org/I55905543","display_name":"Cyprus Institute of Neurology and Genetics","ror":"https://ror.org/01ggsp920","country_code":"CY","type":"nonprofit","lineage":["https://openalex.org/I55905543"]}],"countries":["CY"],"is_corresponding":false,"raw_author_name":"Margarita Zachariou","raw_affiliation_strings":["Bioinformatics Group, Bioinformatics ERA Chair, The Cyprus Institute of Neurology & Genetics, 6 International Airport Avenue, 2370 Nicosia, Cyprus, Nicosia, Cyprus"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Bioinformatics ERA Chair, The Cyprus Institute of Neurology & Genetics, 6 International Airport Avenue, 2370 Nicosia, Cyprus, Nicosia, Cyprus","institution_ids":["https://openalex.org/I55905543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077143574","display_name":"Anastasis Oulas","orcid":"https://orcid.org/0000-0002-9350-7577"},"institutions":[{"id":"https://openalex.org/I55905543","display_name":"Cyprus Institute of Neurology and Genetics","ror":"https://ror.org/01ggsp920","country_code":"CY","type":"nonprofit","lineage":["https://openalex.org/I55905543"]}],"countries":["CY"],"is_corresponding":false,"raw_author_name":"Anastasis Oulas","raw_affiliation_strings":["Bioinformatics Group, Bioinformatics ERA Chair, The Cyprus Institute of Neurology & Genetics, 6 International Airport Avenue, 2370 Nicosia, Cyprus, Nicosia, Cyprus"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Bioinformatics ERA Chair, The Cyprus Institute of Neurology & Genetics, 6 International Airport Avenue, 2370 Nicosia, Cyprus, Nicosia, Cyprus","institution_ids":["https://openalex.org/I55905543"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058322678","display_name":"George M. Spyrou","orcid":"https://orcid.org/0000-0002-2470-3363"},"institutions":[{"id":"https://openalex.org/I55905543","display_name":"Cyprus Institute of Neurology and Genetics","ror":"https://ror.org/01ggsp920","country_code":"CY","type":"nonprofit","lineage":["https://openalex.org/I55905543"]}],"countries":["CY"],"is_corresponding":false,"raw_author_name":"George M Spyrou","raw_affiliation_strings":["Bioinformatics Group, Bioinformatics ERA Chair, The Cyprus Institute of Neurology & Genetics, 6 International Airport Avenue, 2370 Nicosia, Cyprus, Nicosia, Cyprus"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Bioinformatics ERA Chair, The Cyprus Institute of Neurology & Genetics, 6 International Airport Avenue, 2370 Nicosia, Cyprus, Nicosia, Cyprus","institution_ids":["https://openalex.org/I55905543"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5025440739"],"corresponding_institution_ids":["https://openalex.org/I55905543"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":{"value":3989,"currency":"USD","value_usd":3989},"fwci":1.8196,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.85952289,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"35","issue":"5","first_page":"889","last_page":"891"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.0017999999690800905,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.0015999999595806003,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.8258495330810547},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7022493481636047},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.640898585319519},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5857899785041809},{"id":"https://openalex.org/keywords/pathway-analysis","display_name":"Pathway analysis","score":0.5425248146057129},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4515784978866577},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4353029429912567},{"id":"https://openalex.org/keywords/biological-pathway","display_name":"Biological pathway","score":0.4314859211444855},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23921045660972595},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1960734724998474},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.10079756379127502},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09549605846405029},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08001652359962463},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.06523206830024719}],"concepts":[{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.8258495330810547},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7022493481636047},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.640898585319519},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5857899785041809},{"id":"https://openalex.org/C2779230013","wikidata":"https://www.wikidata.org/wiki/Q25303877","display_name":"Pathway analysis","level":4,"score":0.5425248146057129},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4515784978866577},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4353029429912567},{"id":"https://openalex.org/C9927688","wikidata":"https://www.wikidata.org/wiki/Q4915012","display_name":"Biological pathway","level":4,"score":0.4314859211444855},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23921045660972595},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1960734724998474},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.10079756379127502},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09549605846405029},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08001652359962463},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.06523206830024719},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bty693","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty693","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/5/889/48966127/bioinformatics_35_5_889.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30124768","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30124768","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:5389906","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6394395","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6394395","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6394395","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty693","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty693","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/5/889/48966127/bioinformatics_35_5_889.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3863422680","display_name":"Establishment of the Bioinformatics ERA Chair at the Cyprus Institute of Neurology and Genetics","funder_award_id":"669026","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4193090263","display_name":null,"funder_award_id":"669026","funder_id":"https://openalex.org/F4320334679","funder_display_name":"Research Executive Agency"},{"id":"https://openalex.org/G4248882282","display_name":"Integrated Precision Medicine Technologies Research Centre of Excellence","funder_award_id":"763781","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4937468798","display_name":null,"funder_award_id":"H2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334679","display_name":"Research Executive Agency","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2887352627.pdf","grobid_xml":"https://content.openalex.org/works/W2887352627.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W229097380","https://openalex.org/W1578104218","https://openalex.org/W2035618305","https://openalex.org/W2043548405","https://openalex.org/W2172557341","https://openalex.org/W2345356016","https://openalex.org/W2770747919","https://openalex.org/W2792909494","https://openalex.org/W2889327166","https://openalex.org/W6608852248","https://openalex.org/W6754446980"],"related_works":["https://openalex.org/W2529615212","https://openalex.org/W2083488242","https://openalex.org/W3107361973","https://openalex.org/W2943650845","https://openalex.org/W4224243421","https://openalex.org/W4321600314","https://openalex.org/W2402286330","https://openalex.org/W3087561174","https://openalex.org/W4226066106","https://openalex.org/W2378339845"],"abstract_inverted_index":{"SUMMARY:":[0],"PathwayConnector":[1,45],"is":[2,95],"a":[3,19,40,56,78,96],"web-tool":[4,94],"that":[5,107],"facilitates":[6],"the":[7,25,49,67,84],"construction":[8],"of":[9,15,43,59,80,87,105],"complementary":[10,60],"pathway-to-pathway":[11],"networks":[12,74],"and":[13,75],"subnetworks":[14],"them,":[16,53],"based":[17],"on":[18],"reference":[20],"pathway":[21,36],"network":[22],"derived":[23],"from":[24],"rich":[26],"information":[27],"available":[28,123],"either":[29],"in":[30,89],"KEGG":[31],"or":[32],"Reactome":[33],"database":[34],"for":[35,39,83],"mapping.":[37],"Specifically,":[38],"given":[41],"set":[42,58],"pathways,":[44,68],"(i)":[46],"finds":[47],"all":[48],"direct":[50],"connections":[51],"between":[52,66],"(ii)":[54,76],"adds":[55],"minimum":[57],"pathways":[61,88,106],"required":[62],"to":[63,70,90,111],"achieve":[64],"connectivity":[65],"leading":[69],"informative":[71,99],"fully":[72],"connected":[73,103],"provides":[77],"series":[79],"clustering":[81],"methods":[82],"further":[85],"grouping":[86],"sub-clusters.":[91],"The":[92],"proposed":[93],"simple":[97],"yet":[98],"tool":[100],"towards":[101],"identifying":[102],"groups":[104],"are":[108,122],"significantly":[109],"related":[110],"specific":[112],"diseases.":[113],"AVAILABILITY":[114],"AND":[115],"IMPLEMENTATION:":[116],"http://bioinformatics.cing.ac.cy/PathwayConnector.":[117],"SUPPLEMENTARY":[118],"INFORMATION:":[119],"Supplementary":[120],"data":[121],"at":[124],"Bioinformatics":[125],"online.":[126]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":3}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
