{"id":"https://openalex.org/W2888047927","doi":"https://doi.org/10.1093/bioinformatics/bty690","title":"gemBS: high throughput processing for DNA methylation data from bisulfite sequencing","display_name":"gemBS: high throughput processing for DNA methylation data from bisulfite sequencing","publication_year":2018,"publication_date":"2018-08-20","ids":{"openalex":"https://openalex.org/W2888047927","doi":"https://doi.org/10.1093/bioinformatics/bty690","mag":"2888047927","pmid":"https://pubmed.ncbi.nlm.nih.gov/30137223"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty690","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty690","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026388196","display_name":"Angelika Merkel","orcid":"https://orcid.org/0000-0001-5164-6803"},"institutions":[{"id":"https://openalex.org/I4210142206","display_name":"Centro Nacional de An\u00e1lisis Gen\u00f3mico","ror":"https://ror.org/03mynna02","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210142206"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Angelika Merkel","raw_affiliation_strings":["Centro Nacional de An\u00e1lisis Gen\u00f3mico (CNAG-CRG), Centre de Regulacio Gen\u00f3mico (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain"],"raw_orcid":"https://orcid.org/0000-0001-5164-6803","affiliations":[{"raw_affiliation_string":"Centro Nacional de An\u00e1lisis Gen\u00f3mico (CNAG-CRG), Centre de Regulacio Gen\u00f3mico (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain","institution_ids":["https://openalex.org/I4210142206"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023097537","display_name":"Marcos Fern\u00e1ndez-Callejo","orcid":"https://orcid.org/0000-0002-9968-3766"},"institutions":[{"id":"https://openalex.org/I4210142206","display_name":"Centro Nacional de An\u00e1lisis Gen\u00f3mico","ror":"https://ror.org/03mynna02","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210142206"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Marcos Fern\u00e1ndez-Callejo","raw_affiliation_strings":["Centro Nacional de An\u00e1lisis Gen\u00f3mico (CNAG-CRG), Centre de Regulacio Gen\u00f3mico (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro Nacional de An\u00e1lisis Gen\u00f3mico (CNAG-CRG), Centre de Regulacio Gen\u00f3mico (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain","institution_ids":["https://openalex.org/I4210142206"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015716093","display_name":"Eloi Casals","orcid":"https://orcid.org/0000-0001-6433-1923"},"institutions":[{"id":"https://openalex.org/I4210142206","display_name":"Centro Nacional de An\u00e1lisis Gen\u00f3mico","ror":"https://ror.org/03mynna02","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210142206"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Eloi Casals","raw_affiliation_strings":["Centro Nacional de An\u00e1lisis Gen\u00f3mico (CNAG-CRG), Centre de Regulacio Gen\u00f3mico (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro Nacional de An\u00e1lisis Gen\u00f3mico (CNAG-CRG), Centre de Regulacio Gen\u00f3mico (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain","institution_ids":["https://openalex.org/I4210142206"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052502603","display_name":"Santiago Marco\u2010Sola","orcid":"https://orcid.org/0000-0001-7951-3914"},"institutions":[{"id":"https://openalex.org/I123044942","display_name":"Universitat Aut\u00f2noma de Barcelona","ror":"https://ror.org/052g8jq94","country_code":"ES","type":"education","lineage":["https://openalex.org/I123044942"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Santiago Marco-Sola","raw_affiliation_strings":["Universitat Aut\u00f2noma de Barcelona, Bellaterra, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universitat Aut\u00f2noma de Barcelona, Bellaterra, Spain","institution_ids":["https://openalex.org/I123044942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008790246","display_name":"Ronald P. Schuyler","orcid":"https://orcid.org/0000-0001-6018-3935"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ronald Schuyler","raw_affiliation_strings":["Department of Immunology and Microbiology, University of Colorado, Aurora, CO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Immunology and Microbiology, University of Colorado, Aurora, CO, USA","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066760172","display_name":"Marta Gut","orcid":null},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I4210142206","display_name":"Centro Nacional de An\u00e1lisis Gen\u00f3mico","ror":"https://ror.org/03mynna02","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210142206"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ivo G Gut","raw_affiliation_strings":["Centro Nacional de An\u00e1lisis Gen\u00f3mico (CNAG-CRG), Centre de Regulacio Gen\u00f3mico (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain","Universitat Pompeu Fabra (UPF), Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro Nacional de An\u00e1lisis Gen\u00f3mico (CNAG-CRG), Centre de Regulacio Gen\u00f3mico (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain","institution_ids":["https://openalex.org/I4210142206"]},{"raw_affiliation_string":"Universitat Pompeu Fabra (UPF), Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091771874","display_name":"Simon Heath","orcid":"https://orcid.org/0000-0002-9550-0897"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I4210142206","display_name":"Centro Nacional de An\u00e1lisis Gen\u00f3mico","ror":"https://ror.org/03mynna02","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210142206"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Simon C Heath","raw_affiliation_strings":["Centro Nacional de An\u00e1lisis Gen\u00f3mico (CNAG-CRG), Centre de Regulacio Gen\u00f3mico (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain","Universitat Pompeu Fabra (UPF), Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro Nacional de An\u00e1lisis Gen\u00f3mico (CNAG-CRG), Centre de Regulacio Gen\u00f3mico (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain","institution_ids":["https://openalex.org/I4210142206"]},{"raw_affiliation_string":"Universitat Pompeu Fabra (UPF), Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5026388196"],"corresponding_institution_ids":["https://openalex.org/I4210142206"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":1.7677,"has_fulltext":false,"cited_by_count":75,"citation_normalized_percentile":{"value":0.85458346,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":100},"biblio":{"volume":"35","issue":"5","first_page":"737","last_page":"742"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9376000165939331,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9376000165939331,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.011800000444054604,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.008799999952316284,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7116919755935669},{"id":"https://openalex.org/keywords/bisulfite-sequencing","display_name":"Bisulfite sequencing","score":0.656091034412384},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.6034414768218994},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.585862398147583},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5747313499450684},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.5452852249145508},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5052168965339661},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5007216930389404},{"id":"https://openalex.org/keywords/illumina-methylation-assay","display_name":"Illumina Methylation Assay","score":0.4661107659339905},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.4378282129764557},{"id":"https://openalex.org/keywords/cpg-site","display_name":"CpG site","score":0.436450332403183},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.3157275319099426},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30810606479644775},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17126578092575073},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.14409297704696655},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09802237153053284}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7116919755935669},{"id":"https://openalex.org/C189235521","wikidata":"https://www.wikidata.org/wiki/Q4087270","display_name":"Bisulfite sequencing","level":5,"score":0.656091034412384},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.6034414768218994},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.585862398147583},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5747313499450684},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.5452852249145508},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5052168965339661},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5007216930389404},{"id":"https://openalex.org/C136953436","wikidata":"https://www.wikidata.org/wiki/Q6000286","display_name":"Illumina Methylation Assay","level":5,"score":0.4661107659339905},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.4378282129764557},{"id":"https://openalex.org/C140173407","wikidata":"https://www.wikidata.org/wiki/Q1138358","display_name":"CpG site","level":5,"score":0.436450332403183},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.3157275319099426},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30810606479644775},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17126578092575073},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.14409297704696655},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09802237153053284},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013447","descriptor_name":"Sulfites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013447","descriptor_name":"Sulfites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013447","descriptor_name":"Sulfites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bty690","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty690","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30137223","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30137223","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:repositori-api.upf.edu:10230/37257","is_oa":false,"landing_page_url":"http://hdl.handle.net/10230/37257","pdf_url":null,"source":{"id":"https://openalex.org/S4306402615","display_name":"Repositori digital de la UPF (Universitat Pompeu Fabra)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170486558","host_organization_name":"Universitat Pompeu Fabra","host_organization_lineage":["https://openalex.org/I170486558"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320338364","display_name":"FP7 Research infrastructures","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1745052598","https://openalex.org/W1763316571","https://openalex.org/W1963590871","https://openalex.org/W1985604190","https://openalex.org/W2025648894","https://openalex.org/W2069796345","https://openalex.org/W2074746593","https://openalex.org/W2106889224","https://openalex.org/W2129424472","https://openalex.org/W2131374955","https://openalex.org/W2139368808","https://openalex.org/W2152642144","https://openalex.org/W2534924148","https://openalex.org/W2950199861","https://openalex.org/W6637621330"],"related_works":["https://openalex.org/W2754684887","https://openalex.org/W2758690282","https://openalex.org/W1975609775","https://openalex.org/W2008284862","https://openalex.org/W2163125553","https://openalex.org/W3030889166","https://openalex.org/W4220740321","https://openalex.org/W2033244804","https://openalex.org/W2767588354","https://openalex.org/W2304608235"],"abstract_inverted_index":{"MOTIVATION:":[0],"DNA":[1],"methylation":[2,88],"is":[3,112,130],"essential":[4],"for":[5,62,79,90,106],"normal":[6],"embryogenesis":[7],"and":[8,12,40,74,87,98,100,108,115,123,139],"development":[9],"in":[10,94],"mammals":[11],"can":[13,116],"be":[14,117],"captured":[15],"at":[16,152],"single":[17],"base":[18],"pair":[19],"resolution":[20],"by":[21],"whole":[22],"genome":[23],"bisulfite":[24],"sequencing":[25],"(WGBS).":[26],"Current":[27],"available":[28,143,151],"analysis":[29,66],"tools":[30],"are":[31,141,150],"becoming":[32],"rapidly":[33],"outdated":[34],"as":[35],"they":[36],"lack":[37],"sensible":[38],"functionality":[39],"efficiency":[41],"to":[42],"handle":[43],"large":[44,63],"amounts":[45],"of":[46,103],"data":[47,81,149],"now":[48],"commonly":[49],"created.":[50],"RESULTS:":[51],"We":[52],"developed":[53],"gemBS,":[54],"a":[55,69,75,101],"fast":[56],"high-throughput":[57],"bioinformatics":[58],"pipeline":[59],"specifically":[60,78],"designed":[61],"scale":[64],"BS-Seq":[65,80],"that":[67],"combines":[68],"high":[70],"performance":[71],"BS-mapper":[72],"(GEM3)":[73],"variant":[76],"caller":[77],"(BScall).":[82],"gemBS":[83,111,129],"provides":[84],"genotype":[85],"information":[86],"estimates":[89],"all":[91],"genomic":[92],"cytosines":[93],"different":[95],"contexts":[96],"(CpG":[97],"non-CpG)":[99],"set":[102],"quality":[104],"reports":[105],"comprehensive":[107],"reproducible":[109],"analysis.":[110],"highly":[113],"modular":[114],"easily":[118],"automated,":[119],"while":[120],"producing":[121],"robust":[122],"accurate":[124],"results.":[125],"AVAILABILITY":[126],"AND":[127],"IMPLEMENTATION:":[128],"released":[131],"under":[132],"the":[133],"GNU":[134],"GPLv3+":[135],"license.":[136],"Source":[137],"code":[138],"documentation":[140],"freely":[142],"from":[144],"www.statgen.cat/gemBS.":[145],"SUPPLEMENTARY":[146],"INFORMATION:":[147],"Supplementary":[148],"Bioinformatics":[153],"online.":[154]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":22},{"year":2023,"cited_by_count":16},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":5}],"updated_date":"2026-08-27T14:10:00.468798","created_date":"2025-10-10T00:00:00"}
