{"id":"https://openalex.org/W2886725294","doi":"https://doi.org/10.1093/bioinformatics/bty684","title":"PredMP: a web server for de novo prediction and visualization of membrane proteins","display_name":"PredMP: a web server for de novo prediction and visualization of membrane proteins","publication_year":2018,"publication_date":"2018-08-02","ids":{"openalex":"https://openalex.org/W2886725294","doi":"https://doi.org/10.1093/bioinformatics/bty684","mag":"2886725294","pmid":"https://pubmed.ncbi.nlm.nih.gov/30084960"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty684","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty684","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/4/691/27838514/bty684.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/4/691/27838514/bty684.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100371324","display_name":"Sheng Wang","orcid":"https://orcid.org/0000-0003-4210-1670"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":true,"raw_author_name":"Sheng Wang","raw_affiliation_strings":["Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division, Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division, Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078092233","display_name":"Shiyang Fei","orcid":null},"institutions":[{"id":"https://openalex.org/I4210096392","display_name":"Compass (United States)","ror":"https://ror.org/00sp0zs16","country_code":"US","type":"company","lineage":["https://openalex.org/I4210096392"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shiyang Fei","raw_affiliation_strings":["COMPASS, New York, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"COMPASS, New York, NY, USA","institution_ids":["https://openalex.org/I4210096392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012268867","display_name":"Zongan Wang","orcid":"https://orcid.org/0000-0002-7191-1579"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zongan Wang","raw_affiliation_strings":["Department of Chemistry, James Franck Institute, University of Chicago, Chicago, IL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, James Franck Institute, University of Chicago, Chicago, IL, USA","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100345753","display_name":"Yu Li","orcid":"https://orcid.org/0000-0002-3664-6722"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Yu Li","raw_affiliation_strings":["Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division, Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia"],"raw_orcid":"https://orcid.org/0000-0002-3664-6722","affiliations":[{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division, Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019398608","display_name":"Jinbo Xu","orcid":"https://orcid.org/0000-0001-7111-4839"},"institutions":[{"id":"https://openalex.org/I160992636","display_name":"Toyota Technological Institute at Chicago","ror":"https://ror.org/02sn5gb64","country_code":"US","type":"education","lineage":["https://openalex.org/I160992636"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jinbo Xu","raw_affiliation_strings":["Toyota Technological Institute at Chicago, Chicago, IL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Toyota Technological Institute at Chicago, Chicago, IL, USA","institution_ids":["https://openalex.org/I160992636"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073659320","display_name":"Feng Zhao","orcid":"https://orcid.org/0000-0001-7205-3302"},"institutions":[{"id":"https://openalex.org/I108688024","display_name":"Qingdao University","ror":"https://ror.org/021cj6z65","country_code":"CN","type":"education","lineage":["https://openalex.org/I108688024"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Feng Zhao","raw_affiliation_strings":["Prospect Institute of Fatty Acids and Health, Qingdao University, Ningxia, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Prospect Institute of Fatty Acids and Health, Qingdao University, Ningxia, China","institution_ids":["https://openalex.org/I108688024"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100618900","display_name":"Xin Gao","orcid":"https://orcid.org/0000-0002-7108-3574"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":true,"raw_author_name":"Xin Gao","raw_affiliation_strings":["Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division, Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division, Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5073659320","https://openalex.org/A5100371324","https://openalex.org/A5100618900"],"corresponding_institution_ids":["https://openalex.org/I108688024","https://openalex.org/I71920554"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":2.0678,"has_fulltext":true,"cited_by_count":33,"citation_normalized_percentile":{"value":0.87968995,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"35","issue":"4","first_page":"691","last_page":"693"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.8762000203132629,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.8762000203132629,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.04349999874830246,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10407","display_name":"Lipid Membrane Structure and Behavior","score":0.010200000368058681,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6932365298271179},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6791354417800903},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.557715892791748},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4235665202140808},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4124661386013031},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4008510708808899},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.3220441937446594},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.288763165473938},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2545214295387268},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2276577651500702},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1880684196949005}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6932365298271179},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6791354417800903},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.557715892791748},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4235665202140808},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4124661386013031},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4008510708808899},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.3220441937446594},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.288763165473938},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2545214295387268},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2276577651500702},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1880684196949005}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bty684","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty684","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/4/691/27838514/bty684.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30084960","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30084960","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:5963071","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6378930","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/628418","is_oa":false,"landing_page_url":"http://hdl.handle.net/10754/628418","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty684","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty684","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/4/691/27838514/bty684.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G1052733046","display_name":null,"funder_award_id":"URF/1/3007\u201001","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G1632090538","display_name":null,"funder_award_id":"URF/1/2602\u201301","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G4688678934","display_name":"ABI Development: Developing RaptorX Web Portal for Protein Structure and Functional Study","funder_award_id":"1564955","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5678844772","display_name":null,"funder_award_id":"FCC/1/1976\u201004","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G704483839","display_name":null,"funder_award_id":"R01 GM089753","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G8937132293","display_name":"New Computational Methods for Data-driven Protein Structure Prediction","funder_award_id":"5r01gm089753-13","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2886725294.pdf","grobid_xml":"https://content.openalex.org/works/W2886725294.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1864564002","https://openalex.org/W1995017064","https://openalex.org/W2013425283","https://openalex.org/W2115167726","https://openalex.org/W2115540209","https://openalex.org/W2118387386","https://openalex.org/W2136799255","https://openalex.org/W2145020089","https://openalex.org/W2295872319","https://openalex.org/W2342838938","https://openalex.org/W2345242111","https://openalex.org/W2748374366","https://openalex.org/W2751052002","https://openalex.org/W2765742208","https://openalex.org/W2949867299","https://openalex.org/W2950334474","https://openalex.org/W2963457143"],"related_works":["https://openalex.org/W2068608913","https://openalex.org/W3124914020","https://openalex.org/W2141033859","https://openalex.org/W2077542787","https://openalex.org/W2156434174","https://openalex.org/W2071701083","https://openalex.org/W2383687187","https://openalex.org/W2121496884","https://openalex.org/W2387910809","https://openalex.org/W2736583656"],"abstract_inverted_index":{"MOTIVATION:":[0],"PredMP":[1,132,232,247],"is":[2,38,75,168,248],"the":[3,17,25,28,31,60,64,67,107,122,131,140,153,172,180,185,190,195,241,252],"first":[4,49],"web":[5,253],"service,":[6],"to":[7,170,183,229,240],"our":[8,78,104,205],"knowledge,":[9],"that":[10,48,109],"aims":[11],"at":[12,254,262],"de":[13],"novo":[14],"prediction":[15],"of":[16,27,63,116],"membrane":[18],"protein":[19,88],"(MP)":[20],"3D":[21,61,157],"structure":[22,174],"followed":[23,138],"by":[24,53,139,194],"embedding":[26],"MP":[29,51,65,118],"into":[30],"lipid":[32,191],"bilayer":[33,192],"for":[34,86,120,156,210],"visualization.":[35],"Our":[36],"approach":[37,105],"based":[39],"on":[40,201,219,251],"a":[41,113,220],"high-throughput":[42],"Deep":[43,80],"Transfer":[44],"Learning":[45,81],"(DTL)":[46],"method":[47,83],"predicts":[50,59,207],"contacts":[52,69],"learning":[54,124],"from":[55,77,226],"non-MPs":[56],"and":[57,175,178,222],"then":[58],"model":[62,158,235],"using":[66],"predicted":[68,186,196],"as":[70,152],"distance":[71],"restraints.":[72],"This":[73],"algorithm":[74],"derived":[76],"previous":[79],"(DL)":[82],"originally":[84],"developed":[85],"soluble":[87],"contact":[89],"prediction,":[90],"which":[91,150,213],"has":[92,144],"been":[93,146],"officially":[94],"ranked":[95],"No.":[96],"1":[97],"in":[98,103,130,148,166,189],"CASP12.":[99],"The":[100,135,161],"DTL":[101,136],"framework":[102,137],"overcomes":[106],"challenge":[108],"there":[110],"are":[111,127,260],"only":[112],"limited":[114],"number":[115],"solved":[117],"structures":[119],"training":[121],"deep":[123],"model.":[125],"There":[126],"three":[128],"modules":[129],"server:":[133],"(i)":[134],"contact-assisted":[141],"folding":[142],"protocol":[143],"already":[145],"implemented":[147,165],"RaptorX-Contact,":[149],"serves":[151],"key":[154],"module":[155,182],"generation;":[159],"(ii)":[160],"1D":[162],"annotation":[163],"module,":[164],"RaptorX-Property,":[167],"used":[169],"predict":[171],"secondary":[173],"disordered":[176],"regions;":[177],"(iii)":[179],"visualization":[181],"display":[184],"MPs":[187,238],"embedded":[188],"guided":[193],"transmembrane":[197],"topology.":[198],"RESULTS:":[199],"Tested":[200,218],"510":[202],"non-redundant":[203],"MPs,":[204,212],"server":[206],"correct":[208],"folds":[209],"\u223c290":[211],"significantly":[214],"outperforms":[215],"existing":[216],"methods.":[217],"blind":[221],"live":[223],"benchmark":[224],"CAMEO":[225],"September":[227],"2016":[228],"January":[230],"2018,":[231],"can":[233],"successfully":[234],"all":[236],"10":[237],"belonging":[239],"hard":[242],"category.":[243],"AVAILABILITY":[244],"AND":[245],"IMPLEMENTATION:":[246],"freely":[249],"accessed":[250],"http://www.predmp.com.":[255],"SUPPLEMENTARY":[256],"INFORMATION:":[257],"Supplementary":[258],"data":[259],"available":[261],"Bioinformatics":[263],"online.":[264]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2018-08-22T00:00:00"}
