{"id":"https://openalex.org/W2886522378","doi":"https://doi.org/10.1093/bioinformatics/bty676","title":"TIMING 2.0: high-throughput single-cell profiling of dynamic cell\u2013cell interactions by time-lapse imaging microscopy in nanowell grids","display_name":"TIMING 2.0: high-throughput single-cell profiling of dynamic cell\u2013cell interactions by time-lapse imaging microscopy in nanowell grids","publication_year":2018,"publication_date":"2018-07-31","ids":{"openalex":"https://openalex.org/W2886522378","doi":"https://doi.org/10.1093/bioinformatics/bty676","mag":"2886522378","pmid":"https://pubmed.ncbi.nlm.nih.gov/30084956"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty676","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty676","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/4/706/27838421/bty676.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/4/706/27838421/bty676.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014537056","display_name":"Hengyang Lu","orcid":"https://orcid.org/0000-0001-5321-705X"},"institutions":[{"id":"https://openalex.org/I44461941","display_name":"University of Houston","ror":"https://ror.org/048sx0r50","country_code":"US","type":"education","lineage":["https://openalex.org/I44461941"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hengyang Lu","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Houston, Houston, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Houston, Houston, TX, USA","institution_ids":["https://openalex.org/I44461941"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102832373","display_name":"Jiabing Li","orcid":"https://orcid.org/0009-0009-9910-5526"},"institutions":[{"id":"https://openalex.org/I44461941","display_name":"University of Houston","ror":"https://ror.org/048sx0r50","country_code":"US","type":"education","lineage":["https://openalex.org/I44461941"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jiabing Li","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Houston, Houston, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Houston, Houston, TX, USA","institution_ids":["https://openalex.org/I44461941"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026819167","display_name":"Melisa Martinez-Paniagua","orcid":"https://orcid.org/0000-0002-7275-4317"},"institutions":[{"id":"https://openalex.org/I44461941","display_name":"University of Houston","ror":"https://ror.org/048sx0r50","country_code":"US","type":"education","lineage":["https://openalex.org/I44461941"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Melisa A Martinez-Paniagua","raw_affiliation_strings":["Department of Chemical and Biomolecular Engineering, University of Houston, Houston, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemical and Biomolecular Engineering, University of Houston, Houston, TX, USA","institution_ids":["https://openalex.org/I44461941"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003901387","display_name":"Irfan Bandey","orcid":"https://orcid.org/0000-0002-9330-2432"},"institutions":[{"id":"https://openalex.org/I44461941","display_name":"University of Houston","ror":"https://ror.org/048sx0r50","country_code":"US","type":"education","lineage":["https://openalex.org/I44461941"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Irfan N Bandey","raw_affiliation_strings":["Department of Chemical and Biomolecular Engineering, University of Houston, Houston, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemical and Biomolecular Engineering, University of Houston, Houston, TX, USA","institution_ids":["https://openalex.org/I44461941"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017217996","display_name":"Amit Amritkar","orcid":"https://orcid.org/0000-0002-3779-8541"},"institutions":[{"id":"https://openalex.org/I44461941","display_name":"University of Houston","ror":"https://ror.org/048sx0r50","country_code":"US","type":"education","lineage":["https://openalex.org/I44461941"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amit Amritkar","raw_affiliation_strings":["Center for Advanced Computing and Data Science and Department of Mechanical Engineering, University of Houston, Houston, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Advanced Computing and Data Science and Department of Mechanical Engineering, University of Houston, Houston, TX, USA","institution_ids":["https://openalex.org/I44461941"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101762428","display_name":"Harjeet Singh","orcid":"https://orcid.org/0000-0001-6314-5790"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Harjeet Singh","raw_affiliation_strings":["Division of Pediatrics, University of Texas MD Anderson Cancer Center, Houston, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Pediatrics, University of Texas MD Anderson Cancer Center, Houston, TX, USA","institution_ids":["https://openalex.org/I1343551460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035201965","display_name":"David Mayerich","orcid":"https://orcid.org/0000-0002-3949-6133"},"institutions":[{"id":"https://openalex.org/I44461941","display_name":"University of Houston","ror":"https://ror.org/048sx0r50","country_code":"US","type":"education","lineage":["https://openalex.org/I44461941"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Mayerich","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Houston, Houston, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Houston, Houston, TX, USA","institution_ids":["https://openalex.org/I44461941"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041553722","display_name":"Navin Varadarajan","orcid":"https://orcid.org/0000-0001-7524-8228"},"institutions":[{"id":"https://openalex.org/I44461941","display_name":"University of Houston","ror":"https://ror.org/048sx0r50","country_code":"US","type":"education","lineage":["https://openalex.org/I44461941"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Navin Varadarajan","raw_affiliation_strings":["Department of Chemical and Biomolecular Engineering, University of Houston, Houston, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemical and Biomolecular Engineering, University of Houston, Houston, TX, USA","institution_ids":["https://openalex.org/I44461941"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090480130","display_name":"Badrinath Roysam","orcid":"https://orcid.org/0000-0002-8310-1389"},"institutions":[{"id":"https://openalex.org/I44461941","display_name":"University of Houston","ror":"https://ror.org/048sx0r50","country_code":"US","type":"education","lineage":["https://openalex.org/I44461941"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Badrinath Roysam","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Houston, Houston, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Houston, Houston, TX, USA","institution_ids":["https://openalex.org/I44461941"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5041553722","https://openalex.org/A5090480130"],"corresponding_institution_ids":["https://openalex.org/I44461941"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":1.4942,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.85117245,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"35","issue":"4","first_page":"706","last_page":"708"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11491","display_name":"CAR-T cell therapy research","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7986007928848267},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.7317710518836975},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.5531684756278992},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.5209373235702515},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.51237952709198},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4686901867389679},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.45952990651130676},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.4507092833518982},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.19618186354637146}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7986007928848267},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.7317710518836975},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.5531684756278992},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.5209373235702515},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.51237952709198},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4686901867389679},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.45952990651130676},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.4507092833518982},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.19618186354637146},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059008","descriptor_name":"Time-Lapse Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059008","descriptor_name":"Time-Lapse Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059008","descriptor_name":"Time-Lapse Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bty676","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty676","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/4/706/27838421/bty676.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30084956","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30084956","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:5963075","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6378937","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty676","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty676","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/4/706/27838421/bty676.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1144180999","display_name":null,"funder_award_id":"R01 CA174385","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G2104435424","display_name":"Single-cell biomarkers for engineering T-cell function and metabolism","funder_award_id":"509800","funder_id":"https://openalex.org/F4320308296","funder_display_name":"Melanoma Research Alliance"},{"id":"https://openalex.org/G2293688702","display_name":"Biomanufacturing next generation T cells","funder_award_id":"1705464","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5447555067","display_name":"Large-Scale Reconstruction of Microvascular Networks and the Surrounding Cellular","funder_award_id":"5r00lm011390-04","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5822890605","display_name":"Recruitment of First-Time, Tenure-Track Faculty Members","funder_award_id":"RR140013","funder_id":"https://openalex.org/F4320308129","funder_display_name":"Cancer Prevention and Research Institute of Texas"},{"id":"https://openalex.org/G6195398229","display_name":null,"funder_award_id":"R00 LM011390","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G6312906255","display_name":"Quantitative single-cell biomarkers of T-cells to optimize tumor immunotherapy","funder_award_id":"5r01ca174385-04","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6759011924","display_name":null,"funder_award_id":"CA160591","funder_id":"https://openalex.org/F4320338273","funder_display_name":"Congressionally Directed Medical Research Programs"},{"id":"https://openalex.org/G7205488015","display_name":"Integrated single-cell biomarkers of T-cell efficacy","funder_award_id":"RP180466","funder_id":"https://openalex.org/F4320308129","funder_display_name":"Cancer Prevention and Research Institute of Texas"},{"id":"https://openalex.org/G8329230329","display_name":null,"funder_award_id":"RP180466","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320308129","display_name":"Cancer Prevention and Research Institute of Texas","ror":"https://ror.org/0003xa228"},{"id":"https://openalex.org/F4320308296","display_name":"Melanoma Research Alliance","ror":"https://ror.org/025ck6r46"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"},{"id":"https://openalex.org/F4320338273","display_name":"Congressionally Directed Medical Research Programs","ror":"https://ror.org/03g2zjp07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2886522378.pdf","grobid_xml":"https://content.openalex.org/works/W2886522378.grobid-xml"},"referenced_works_count":3,"referenced_works":["https://openalex.org/W2029661710","https://openalex.org/W2289495393","https://openalex.org/W2800801614"],"related_works":["https://openalex.org/W2341492732","https://openalex.org/W3187193180","https://openalex.org/W106542691","https://openalex.org/W4287027380","https://openalex.org/W1699080303","https://openalex.org/W4297799326","https://openalex.org/W4240625990","https://openalex.org/W2789551765","https://openalex.org/W2022968056","https://openalex.org/W2624709009"],"abstract_inverted_index":{"MOTIVATION:":[0],"Automated":[1],"profiling":[2],"of":[3,12,36,55,156,169],"cell-cell":[4,24],"interactions":[5,25],"from":[6],"high-throughput":[7],"time-lapse":[8],"imaging":[9],"microscopy":[10],"data":[11,71,188,201],"cells":[13],"in":[14,26,66,162],"nanowell":[15,159],"grids":[16],"(TIMING)":[17,114],"has":[18],"led":[19],"to":[20,32,43,64,130,144],"fundamental":[21],"insights":[22],"into":[23],"immunotherapy.":[27],"This":[28],"application":[29],"note":[30],"aims":[31],"enable":[33],"widespread":[34],"adoption":[35],"TIMING":[37,89],"by":[38],"(i)":[39],"enabling":[40,59],"the":[41,67,103,142,146,170,195],"computations":[42],"occur":[44,65],"on":[45,102,116],"a":[46,50,56,74,79,86,117,167],"desktop":[47,87],"computer":[48],"with":[49,194],"graphical":[51,81,138],"processing":[52],"unit":[53],"instead":[54],"server;":[57],"(ii)":[58],"image":[60],"acquisition":[61],"and":[62,76,106,165,189],"analysis":[63,148],"laboratory":[68],"avoiding":[69],"network":[70],"transfers":[72],"to/from":[73],"server":[75],"(iii)":[77],"providing":[78],"comprehensive":[80],"user":[82,139],"interface.":[83],"RESULTS:":[84],"On":[85],"computer,":[88,105],"2.0":[90],"takes":[91],"5":[92],"s/block/image":[93],"frame,":[94],"four":[95],"times":[96],"faster":[97],"than":[98],"our":[99,111,131],"previous":[100,112,132],"method":[101,113,133],"same":[104],"twice":[107],"as":[108,110],"fast":[109],"running":[115],"Dell":[118],"PowerEdge":[119],"server.":[120],"The":[121],"cell":[122,171],"segmentation":[123],"accuracy":[124],"(f-number":[125,134],"=":[126,135],"0.993)":[127],"is":[128],"superior":[129],"0.821).":[136],"A":[137],"interface":[140],"provides":[141],"ability":[143],"inspect":[145],"video":[147,160],"results,":[149],"make":[150],"corrective":[151],"edits":[152],"efficiently":[153],"(one-click":[154],"editing":[155],"an":[157],"entire":[158],"sequence":[161],"5-10":[163],"s)":[164],"display":[166],"summary":[168],"killing":[172],"efficacy":[173],"measurements.":[174],"AVAILABILITY":[175],"AND":[176],"IMPLEMENTATION:":[177],"Open":[178],"source":[179],"Python":[180],"software":[181],"(GPL":[182],"v3":[183],"license),":[184],"instruction":[185],"manual,":[186],"sample":[187,190],"results":[191],"are":[192,202],"included":[193],"Supplement":[196],"(https://github.com/RoysamLab/TIMING2).":[197],"SUPPLEMENTARY":[198],"INFORMATION:":[199],"Supplementary":[200],"available":[203],"at":[204],"Bioinformatics":[205],"online.":[206]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
