{"id":"https://openalex.org/W2883467144","doi":"https://doi.org/10.1093/bioinformatics/bty653","title":"StackDPPred: a stacking based prediction of DNA-binding protein from sequence","display_name":"StackDPPred: a stacking based prediction of DNA-binding protein from sequence","publication_year":2018,"publication_date":"2018-07-19","ids":{"openalex":"https://openalex.org/W2883467144","doi":"https://doi.org/10.1093/bioinformatics/bty653","mag":"2883467144","pmid":"https://pubmed.ncbi.nlm.nih.gov/30032213"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty653","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty653","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000961605","display_name":"Avdesh Mishra","orcid":"https://orcid.org/0000-0001-9666-8715"},"institutions":[{"id":"https://openalex.org/I192396691","display_name":"University of New Orleans","ror":"https://ror.org/034mtvk83","country_code":"US","type":"education","lineage":["https://openalex.org/I192396691","https://openalex.org/I2799628689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Avdesh Mishra","raw_affiliation_strings":["Department of Computer Science, University of New Orleans, New Orleans, LA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of New Orleans, New Orleans, LA, USA","institution_ids":["https://openalex.org/I192396691"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032814089","display_name":"Pujan Pokhrel","orcid":"https://orcid.org/0000-0001-9586-7341"},"institutions":[{"id":"https://openalex.org/I192396691","display_name":"University of New Orleans","ror":"https://ror.org/034mtvk83","country_code":"US","type":"education","lineage":["https://openalex.org/I192396691","https://openalex.org/I2799628689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pujan Pokhrel","raw_affiliation_strings":["Department of Computer Science, University of New Orleans, New Orleans, LA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of New Orleans, New Orleans, LA, USA","institution_ids":["https://openalex.org/I192396691"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055092646","display_name":"Md Tamjidul Hoque","orcid":"https://orcid.org/0000-0002-0110-2194"},"institutions":[{"id":"https://openalex.org/I192396691","display_name":"University of New Orleans","ror":"https://ror.org/034mtvk83","country_code":"US","type":"education","lineage":["https://openalex.org/I192396691","https://openalex.org/I2799628689"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Md Tamjidul Hoque","raw_affiliation_strings":["Department of Computer Science, University of New Orleans, New Orleans, LA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of New Orleans, New Orleans, LA, USA","institution_ids":["https://openalex.org/I192396691"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5055092646"],"corresponding_institution_ids":["https://openalex.org/I192396691"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.7244,"has_fulltext":false,"cited_by_count":136,"citation_normalized_percentile":{"value":0.96063954,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"35","issue":"3","first_page":"433","last_page":"441"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6004315614700317},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5756800174713135},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.4606729745864868},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.4566859006881714},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4521411657333374},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3440895080566406},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.33501678705215454},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3253522515296936},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.283578097820282},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19887948036193848},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13167452812194824}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6004315614700317},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5756800174713135},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.4606729745864868},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.4566859006881714},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4521411657333374},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3440895080566406},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.33501678705215454},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3253522515296936},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.283578097820282},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19887948036193848},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13167452812194824},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056510","descriptor_name":"Position-Specific Scoring Matrices","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056510","descriptor_name":"Position-Specific Scoring Matrices","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056510","descriptor_name":"Position-Specific Scoring Matrices","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bty653","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty653","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30032213","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30032213","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309392","display_name":"Louisiana Board of Regents","ror":"https://ror.org/00jv89z46"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":80,"referenced_works":["https://openalex.org/W17408266","https://openalex.org/W28412257","https://openalex.org/W591482569","https://openalex.org/W596647800","https://openalex.org/W1029372650","https://openalex.org/W1480376833","https://openalex.org/W1491553314","https://openalex.org/W1496604422","https://openalex.org/W1857439054","https://openalex.org/W1974480392","https://openalex.org/W1974646727","https://openalex.org/W1985258161","https://openalex.org/W1991244466","https://openalex.org/W1992116297","https://openalex.org/W1994352963","https://openalex.org/W2001101658","https://openalex.org/W2010688088","https://openalex.org/W2027364181","https://openalex.org/W2030922238","https://openalex.org/W2033855745","https://openalex.org/W2041057543","https://openalex.org/W2042714852","https://openalex.org/W2051808158","https://openalex.org/W2056132907","https://openalex.org/W2058833671","https://openalex.org/W2061293154","https://openalex.org/W2062225859","https://openalex.org/W2078749507","https://openalex.org/W2079741453","https://openalex.org/W2081998091","https://openalex.org/W2085656056","https://openalex.org/W2085836956","https://openalex.org/W2090557416","https://openalex.org/W2091411809","https://openalex.org/W2091659777","https://openalex.org/W2101234009","https://openalex.org/W2101352936","https://openalex.org/W2102864597","https://openalex.org/W2107539619","https://openalex.org/W2113649367","https://openalex.org/W2114042714","https://openalex.org/W2114535505","https://openalex.org/W2114669670","https://openalex.org/W2117502874","https://openalex.org/W2125463451","https://openalex.org/W2126101541","https://openalex.org/W2130132457","https://openalex.org/W2132402247","https://openalex.org/W2135893370","https://openalex.org/W2138769522","https://openalex.org/W2139329050","https://openalex.org/W2140574901","https://openalex.org/W2141149420","https://openalex.org/W2142678478","https://openalex.org/W2144347309","https://openalex.org/W2147580225","https://openalex.org/W2148004368","https://openalex.org/W2149298154","https://openalex.org/W2149414426","https://openalex.org/W2151639574","https://openalex.org/W2154447604","https://openalex.org/W2156690214","https://openalex.org/W2158714788","https://openalex.org/W2161199282","https://openalex.org/W2161732286","https://openalex.org/W2200642376","https://openalex.org/W2225640440","https://openalex.org/W2293405914","https://openalex.org/W2312696462","https://openalex.org/W2333360787","https://openalex.org/W2511778323","https://openalex.org/W2782535789","https://openalex.org/W2787894218","https://openalex.org/W2790001298","https://openalex.org/W2912934387","https://openalex.org/W4212883601","https://openalex.org/W4236354716","https://openalex.org/W6673531662","https://openalex.org/W6675354045","https://openalex.org/W6680733387"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4224009465","https://openalex.org/W4306674287","https://openalex.org/W4286629047","https://openalex.org/W4205958290","https://openalex.org/W4384212932","https://openalex.org/W4390590544","https://openalex.org/W2096195258","https://openalex.org/W2990460313","https://openalex.org/W2973458857"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":25},{"year":2023,"cited_by_count":15},{"year":2022,"cited_by_count":30},{"year":2021,"cited_by_count":26},{"year":2020,"cited_by_count":15},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":3}],"updated_date":"2026-03-09T08:58:05.943551","created_date":"2025-10-10T00:00:00"}
